mRNA_S-dermatodea_contig12697.1656.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12697.1656.1
Unique NamemRNA_S-dermatodea_contig12697.1656.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12697.1656.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.270e-11
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   73 MVAMKRKRPGQEYGEDEKLLHQATKAFTKETKRVKTFLLQQAIRKRKS 216
            MVAMKRKR GQ Y +DEKL HQATKA TKE KRVKTFLLQQAIR+ K+
Sbjct:    1 MVAMKRKRAGQGYDDDEKLRHQATKALTKEAKRVKTFLLQQAIRRSKA 48
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12697.1656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K792_9PHAE1.270e-1179.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12697contigS-dermatodea_contig12697:1154..3775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size333
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924258.3675208-CDS-S-dermatodea_contig12697:1153..12911622924258.3675208-CDS-S-dermatodea_contig12697:1153..1291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12697 1154..1291 +
1694079130.939789-CDS-S-dermatodea_contig12697:1153..12911694079130.939789-CDS-S-dermatodea_contig12697:1153..1291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12697 1154..1291 +
1622924258.3811162-CDS-S-dermatodea_contig12697:3581..37731622924258.3811162-CDS-S-dermatodea_contig12697:3581..3773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12697 3582..3773 +
1694079130.948229-CDS-S-dermatodea_contig12697:3581..37731694079130.948229-CDS-S-dermatodea_contig12697:3581..3773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12697 3582..3773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12697.1656.1prot_S-dermatodea_contig12697.1656.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12697 1154..3773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12697.1656.1

>prot_S-dermatodea_contig12697.1656.1 ID=prot_S-dermatodea_contig12697.1656.1|Name=mRNA_S-dermatodea_contig12697.1656.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
CVCFLLLLLLLLLLESDRLCGRRVMVAMKRKRPGQEYGEDEKLLHQATKA
FTKETKRVKTFLLQQAIRKRKSTEEKQKAKQSKSAATGSSNSSSGGGGGG
GGGVSTQAVS
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mRNA from alignment at S-dermatodea_contig12697:1154..3775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12697.1656.1 ID=mRNA_S-dermatodea_contig12697.1656.1|Name=mRNA_S-dermatodea_contig12697.1656.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2622bp|location=Sequence derived from alignment at S-dermatodea_contig12697:1154..3775+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGTTTGCTTTCTACTGCTGCTGCTGCTGCTGCTGCTGCTGGAGAGTGA
TCGATTGTGCGGGCGGCGGGTGATGGTGGCCATGAAGCGAAAGAGGCCCG
GGCAGGAATACGGCGAAGACGAGAAGCTGCTCCACCAGGTGTGTGTGTAT
TTTCTCTCAGAGGCACCATCAATTATCAACATTTGAGTATATAGAGCTAC
AGAGAGGACAGGACCACGTGACCACGTGCCGCACTGCACCCCCTGGGCTG
AGGGCAAGCTCTTAGGTGCGGCCGGCTAAATGACCTACTCTGCGAGTGGG
AGTAAGTACCCTACCGATTCAGTCGAGACACGATACAGCAGTAGAACAGG
CACAATCGACACCCATCCCTGGTTATATATCATACAAGTATTCTAGACAT
TGTCCGCCCCGCTCTCTCAAACAGCAAGAGGTGCGTTTCGTTGAAACAGA
TGGTTATACTGCTGCACTTCTGCTGTGTACTCTGTACATCGCGCTGGATC
AACAAGCCTGGTCGTATAATACGATACGATAGCATAGGCTGAGGCGTCGA
GGAGAGCCAGAGTCGCGAGAACCTCAGACGCAGACAGCAGAGGCTGTGTA
GAGTATGCTGCCCGTGCTGTTCACCAGGCATCACAAAGTTCATGTAGGCA
AAATTTATGGTACATGCACATTCCTAGTCCTATGCAGCAGTAGTATACTG
CATTGTACTACCGCAGGACCTCTCGGGTTAGAGGCTTCGGCTCACATGGT
AATGAAGTCAAGAGCCTTGGAAACACCGCCGCAGGGATTGATGGGGTTTT
GACAGCGTACGGCAAAGACTCCAAACCGGCCGTTACGACTTTGTATGCGG
CAATGTGATACAGTACATAATTCAGTCGACAACACAGCCCACACAAGTAC
GTTGCAACGGCCCTTCCACCGCAACTGGCCGTAGCTCAAAAAGGACCTGT
GGAGAGGCGAGGGAGCATTGTTTGAGTCCGAGTTCTTCTTCTATTAATAG
CGTTTTTTTCATACATCTGGGATACTGTTTCTTATTTCTTGTACCTATGA
GTAAGTACCAGGGACGGTACGATGTATAAGTAGAAGTAGAGTTCTGAGTA
GTTTTTTTTCTCCTTGACTCTTTGCGTGTCTGACCACAAGTTCGGATCGG
TCGGATTAAGCCGGTCGGCTATACGTGTGCAAATCAAATCAATCAAAAAT
CAAACGTACTTGTACGGGTATACACACTCTGTATTTATACAGACAGTAGT
ATTACTGTATCCTTATTATTTAACACAAGGGCGAACGTATTGATTATTGA
TTTTTTTCATATTACGGAGGTACACTAAGATCAAGTAATCAGGACCAAAC
ATCACGACCATGACTATCATACTGTACCCAAGTATAAGTATTCCAACGAT
GAATGCAATACCCAAACAACAACAAACAAATTTCACGAAGAAAAAAATAA
AAACGCACGAGGTCTGGCGTTACACAACAACATCGACCATGAAACCTCCA
TAATTTATAATTTATAATTTCAGCCTTTTTTTGTTTTTTCTTGGTTGAGA
CTTGTGGCAAATTGGACCTGTTAAAGTTAACTATGGTATATTCCTCCGTA
ATAGTGTTTTAGCGTGGACCGTATACTTGTATACGATTTGAGGCCGATGT
TGTACACTAAACTCGCCGCCCGTCGCCCCACCCGCGCGGTCGCCGCGGTC
GAGCGCGGCGCCTACGCCTGCCGTGGGTCGCCACAGCGTATCCTCCAAAC
CCAACCCGCACATCGTCCTGCCAACGCACACCTCACGGGCGACAGCCTTA
CCGTGGCTTGCAACTATTATAGTTAACAATAATATTAATATTATACTGTA
CAGTAGTAACAACCGTAGGAATACTATACTATACTGTACTCGATACTGTA
GACGACATGCCGCTATACAGGTACTGTAAAAGCATCCCCTGCACACCTAA
AAAATGTACTTGTATTGTGCTGATTTCGAAAGGCACAAAGCGAGCATCTG
GGGTCTCCCGCCTTTTTGAGAAGGGACGATGGTCCAAGCTAAACCTATGG
AAGCTTTACCCATGCACCACCCCTACCCCCCCCCACCCCTAAAAAAATTA
AAGATTTCAGAAACATAGAGCGAGCGTCCCCCCCACCCCCCCCTAAAAAA
TAACAGATTTCAGAAACATAGAGCGAGCGTTGGGGTCCCACCTTTTCAAG
AGGGAAGATGGTCCAAGCTACACCCATGGAGGCTAGGCTCACTTGTTATG
TATGATGCTACATATAGATGGTGTCGTATCATGTACTGGTATGATGTTGC
ATGGATATGGCACTCCCCCTCCCCCCCCCCACACCAACACCAACACCTCA
CCCGGTTCAACACACGCACGCCCGCGCTCCCCCCCCCCCGTCCCCCTCTC
TCTCTCGGCCACCCATCTGCCCGGTCAGGCAACCAAGGCGTTCACGAAGG
AGACCAAGCGAGTCAAGACCTTCCTTCTCCAGCAAGCCATCCGCAAGCGC
AAGTCCACGGAAGAAAAACAAAAGGCCAAGCAATCCAAATCCGCTGCTAC
TGGAAGCAGCAACAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGGG
TTTCCACGCAGGCCGTATCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12697:1154..3775+

>mRNA_S-dermatodea_contig12697.1656.1 ID=mRNA_S-dermatodea_contig12697.1656.1|Name=mRNA_S-dermatodea_contig12697.1656.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig12697:1154..3775+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGTTTGCTTTCTACTGCTGCTGCTGCTGCTGCTGCTGCTGGAGAGTGA
TCGATTGTGCGGGCGGCGGGTGATGGTGGCCATGAAGCGAAAGAGGCCCG
GGCAGGAATACGGCGAAGACGAGAAGCTGCTCCACCAGTGCGTTTGCTTT
CTACTGCTGCTGCTGCTGCTGCTGCTGCTGGAGAGTGATCGATTGTGCGG
GCGGCGGGTGATGGTGGCCATGAAGCGAAAGAGGCCCGGGCAGGAATACG
GCGAAGACGAGAAGCTGCTCCACCAGGCAACCAAGGCGTTCACGAAGGAG
ACCAAGCGAGTCAAGACCTTCCTTCTCCAGCAAGCCATCCGCAAGCGCAA
GTCCACGGAAGAAAAACAAAAGGCCAAGCAATCCAAATCCGCTGCTACTG
GAAGCAGCAACAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGTT
TCCACGCAGGCCGTATCGGCAACCAAGGCGTTCACGAAGGAGACCAAGCG
AGTCAAGACCTTCCTTCTCCAGCAAGCCATCCGCAAGCGCAAGTCCACGG
AAGAAAAACAAAAGGCCAAGCAATCCAAATCCGCTGCTACTGGAAGCAGC
AACAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGTTTCCACGCA
GGCCGTATCG
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