mRNA_S-dermatodea_contig1264.1627.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1264.1627.1
Unique NamemRNA_S-dermatodea_contig1264.1627.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1264.1627.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 8.890e-67
Identity = 110/163 (67.48%), Postives = 130/163 (79.75%), Query Frame = 3 
Query:  222 DGRARVAHIIGGIVPVSSKKHCVAPRLTRVALSDGSTGMAKVGKAVAAGVWPALEKLSLSHCRANAGRFKELAHGLRTGHAPNLRVLYWDDQSSIREKSVDDVILLALSARMCPLIERLSFTGNRFWPEYRIRFLIEAFRGCPSLRGLSMDCSRQPHDDLRAL 710
            +GRARV  I+G +VP+S+K+H VAPRL+RV L DG+TG+AK G+AVAAG+WPALE L+ SHCRANAG F++LA GLR+G AP LRVL WDDQSS+R+ SVDDVIL ALS   CPL+ERLSFTGNRF PE+ I +L EA   CP LR L MDCSR PH  LR L
Sbjct:   87 NGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVL 249
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BLAST of mRNA_S-dermatodea_contig1264.1627.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.150e-66
Identity = 110/168 (65.48%), Postives = 129/168 (76.79%), Query Frame = 3 
Query:  225 GRARVAHIIGGIVPVSSKKHCVAPRLTRVALSDGSTGMAKVGKAVAAGVWPALEKLSLSHCRANAGRFKELAHGLRTGHAPNLRVLYWDDQSSIREKSVDDVILLALSARMCPLIERLSFTGNRFWPEYRIRFLIEAFRGCPSLRGLSMDCSRQPHDDLRALTDRAGG 728
            GRARV  I+G +VP+S+K+H VAPRL RV L DG+TG+AK G+AVAAG+WPALE L+ SHCRANAG F++LA GLR+G AP LRVL WDDQSS+R+ +VDDVIL ALS   CPL+ERLSFTGNRF PE+RIR+L E    CP LR L MDCSR PH  L  L     G
Sbjct:   84 GRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAG 251
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BLAST of mRNA_S-dermatodea_contig1264.1627.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 3.350e-61
Identity = 106/164 (64.63%), Postives = 125/164 (76.22%), Query Frame = 3 
Query:  237 VAHIIGGIVPVSSKKHCVAPRLTRVALSDGSTGMAKVGKAVAAGVWPALEKLSLSHCRANAGRFKELAHGLRTGHAPNLRVLYWDDQSSIREKSVDDVILLALSARMCPLIERLSFTGNRFWPEYRIRFLIEAFRGCPSLRGLSMDCSRQPHDDLRALTDRAGG 728
            V  I+G +VP+S+K+H VAPRL RV L DG+TG+AK G+AVAAG+WPALE L+ SHCRANAG F++LA GLR+G AP LRVL WDDQSS+R+ +VDDVIL ALS   CPL+ERLSFTGNRF PE+RIR+L E    CP LR L MDCSR PH  L  L     G
Sbjct:  309 VGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAG 472
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BLAST of mRNA_S-dermatodea_contig1264.1627.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 6.770e-61
Identity = 104/161 (64.60%), Postives = 123/161 (76.40%), Query Frame = 3 
Query:  246 IIGGIVPVSSKKHCVAPRLTRVALSDGSTGMAKVGKAVAAGVWPALEKLSLSHCRANAGRFKELAHGLRTGHAPNLRVLYWDDQSSIREKSVDDVILLALSARMCPLIERLSFTGNRFWPEYRIRFLIEAFRGCPSLRGLSMDCSRQPHDDLRALTDRAGG 728
            I+G +VP+S+K+H VAPRL RV L DG+TG+AK G+AVA G+WPALE L+ SHCRANAG F++LA GLR+G AP LRVL WDDQSSIR+ +VDDVIL ALS   CPL+E LSFTGNRF PE+RI +L E    CP LR L MDCSR PH +LR L     G
Sbjct:  238 ILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNRFCPEHRITYLEEMLWVCPRLRELRMDCSRTPHHELRVLAGALAG 398
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BLAST of mRNA_S-dermatodea_contig1264.1627.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 5.760e-60
Identity = 105/167 (62.87%), Postives = 122/167 (73.05%), Query Frame = 3 
Query:  228 RARVAHIIGGIVPVSSKKHCVAPRLTRVALSDGSTGMAKVGKAVAAGVWPALEKLSLSHCRANAGRFKELAHGLRTGHAPNLRVLYWDDQSSIREKSVDDVILLALSARMCPLIERLSFTGNRFWPEYRIRFLIEAFRGCPSLRGLSMDCSRQPHDDLRALTDRAGG 728
            R RV  I G +VP+S+K+H VA RL RV L DG+TG AK GKAVAAG+ PALE  + SHCRANAG F++LA GLR+G AP LRVL WDDQS+IR+ ++DDVIL ALS   CPL+ERLSFTG RF PE+ IR+L E F  CP LR L MDCSR PH  LR L     G
Sbjct:   11 RPRVGAIRGELVPLSAKRHRVARRLARVHLVDGATGAAKAGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTRFCPEHSIRYLEEMFWVCPRLRELRMDCSRTPHHQLRVLAGALAG 177
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1264.1627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LAY2_ECTSI8.890e-6767.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWR8_ECTSI1.150e-6665.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWR9_ECTSI3.350e-6164.63Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KDB3_9PHAE6.770e-6164.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU71_9PHAE5.760e-6062.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1264contigS-dermatodea_contig1264:2800..3998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size858
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1264.1627.1prot_S-dermatodea_contig1264.1627.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1264 2925..3886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.440571-UTR-S-dermatodea_contig1264:2799..29241622924256.440571-UTR-S-dermatodea_contig1264:2799..2924Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1264 2800..2924 +
1694079129.6423173-UTR-S-dermatodea_contig1264:2799..29241694079129.6423173-UTR-S-dermatodea_contig1264:2799..2924Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1264 2800..2924 +
1622924256.4731019-UTR-S-dermatodea_contig1264:3886..39981622924256.4731019-UTR-S-dermatodea_contig1264:3886..3998Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1264 3887..3998 +
1694079129.6694322-UTR-S-dermatodea_contig1264:3886..39981694079129.6694322-UTR-S-dermatodea_contig1264:3886..3998Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1264 3887..3998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924256.451293-CDS-S-dermatodea_contig1264:2924..29261622924256.451293-CDS-S-dermatodea_contig1264:2924..2926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 2925..2926 +
1694079129.6511815-CDS-S-dermatodea_contig1264:2924..29261694079129.6511815-CDS-S-dermatodea_contig1264:2924..2926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 2925..2926 +
1622924256.4643283-CDS-S-dermatodea_contig1264:3267..38861622924256.4643283-CDS-S-dermatodea_contig1264:3267..3886Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 3268..3886 +
1694079129.6597776-CDS-S-dermatodea_contig1264:3267..38861694079129.6597776-CDS-S-dermatodea_contig1264:3267..3886Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1264 3268..3886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1264.1627.1

>prot_S-dermatodea_contig1264.1627.1 ID=prot_S-dermatodea_contig1264.1627.1|Name=mRNA_S-dermatodea_contig1264.1627.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=207bp
MMRQASCAALHSHPALDLCRKVQDSSHKPGCIDGRARVAHIIGGIVPVSS
KKHCVAPRLTRVALSDGSTGMAKVGKAVAAGVWPALEKLSLSHCRANAGR
FKELAHGLRTGHAPNLRVLYWDDQSSIREKSVDDVILLALSARMCPLIER
LSFTGNRFWPEYRIRFLIEAFRGCPSLRGLSMDCSRQPHDDLRALTDRAG
GVRAES*
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mRNA from alignment at S-dermatodea_contig1264:2800..3998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1264.1627.1 ID=mRNA_S-dermatodea_contig1264.1627.1|Name=mRNA_S-dermatodea_contig1264.1627.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1199bp|location=Sequence derived from alignment at S-dermatodea_contig1264:2800..3998+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAACCGGACGACTTCGATCCTGCCGGACACATGGGTGTACAGCCAACCGG
AGGGCTGGCCACGGGCAGAGTAGTGACGCGAATCACAGTCACGAACTGCT
ACAATCGCATGGTGAGGGTTCCGCGATGTGAACAACGGCAGGGCCATGTT
TTTGTACTTGCAAAAGCAATGTATTTTTCCCGCGTCTGGAGCACGCCATA
AGAAAATATATTTATATAACGGCGACCGTTTGGCGCACATGGATGGCACC
ACCAAAGGACACCCATCGCTGCGTGGGAGCAACAAGCTCGTAATCAGCTT
TTTGTATTTATCCTAATACCGTGCCCCTCGAACATGCATGCCGTATTGGC
GCGGCCTCGATCGATCAGCAGTGCACGCACGACCCACGCCTCGTTTACGC
ATACAGTGCACGCCTGCGCCCCTTTTTTCTTCTCCCTTCGATCGCAGGGG
GGATACACGGCCCTCGAGGATGCGTCAAGCGAGTTGTGCGGCACTCCACT
CCCACCCTGCGCTCGATCTCTGTCGGAAAGTGCAAGACTCTTCTCACAAG
CCCGGCTGCATTGATGGCCGCGCTAGGGTGGCGCACATCATTGGCGGGAT
CGTTCCTGTTTCCTCCAAGAAGCACTGCGTCGCTCCGAGGCTCACCCGGG
TGGCGCTCAGCGACGGGTCCACCGGCATGGCCAAAGTGGGCAAGGCCGTC
GCGGCGGGGGTGTGGCCAGCGCTGGAGAAGCTTAGCCTGTCCCACTGCCG
CGCGAATGCAGGCCGTTTCAAGGAGCTTGCCCACGGTCTCCGCACGGGGC
ACGCTCCAAACCTGCGTGTGCTGTACTGGGATGACCAGTCCTCCATCAGG
GAGAAATCAGTCGACGACGTCATTCTGTTGGCCCTGTCCGCTCGCATGTG
CCCTCTCATCGAACGGCTGAGTTTCACTGGCAACCGCTTTTGGCCGGAGT
ATCGCATCCGCTTCCTGATAGAAGCGTTCCGGGGTTGCCCGAGTCTGCGG
GGGCTCTCGATGGATTGCTCCCGGCAGCCCCACGACGATTTGCGGGCCTT
GACCGACCGTGCCGGCGGGGTACGCGCCGAATCTTGAGCATTTATTCGTT
CGCGCCACCGCCCGGTTCTATTCGGAGAGCGACACAGCACTGAAATCGTT
GAGGCAGGCGACGGCGGCGGTTTCCGGTTTGCCTAGAATCGAGCATCAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1264:2800..3998+

>mRNA_S-dermatodea_contig1264.1627.1 ID=mRNA_S-dermatodea_contig1264.1627.1|Name=mRNA_S-dermatodea_contig1264.1627.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at S-dermatodea_contig1264:2800..3998+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATGATGCGTCAAGCGAGTTGTGCGGCACTCCACTCCCACCCTGCGCTC
GATCTCTGTCGGAAAGTGCAAGACTCTTCTCACAAGCCCGGCTGCATTGA
TGGCCGCGCTAGGGTGGCGCACATCATTGGCGGGATCGTTCCTGTTTCCT
CCAAGAAGCACTGCGTCGCTCCGAGGCTCACCCGGGTGGCGCTCAGCGAC
GGGTCCACCGGCATGGCCAAAGTGGGCAAGGCCGTCGCGGCGGGGGTGTG
GCCAGCGCTGGAGAAGCTTAGCCTGTCCCACTGCCGCGCGAATGCAGGCC
GTTTCAAGGAGCTTGCCCACGGTCTCCGCACGGGGCACGCTCCAAACCTG
CGTGTGCTGTACTGGGATGACCAGTCCTCCATCAGGGAGAAATCAGTCGA
CGACGTCATTCTGTTGGCCCTGTCCGCTCGCATGTGCCCTCTCATCGAAC
GGCTGAGTTTCACTGGCAACCGCTTTTGGCCGGAGTATCGCATCCGCTTC
CTGATAGAAGCGTTCCGGGGTTGCCCGAGTCTGCGGGGGCTCTCGATGGA
TTGCTCCCGGCAGCCCCACGACGATTTGCGGGCCTTGACCGACCGTGCCG
GCGGGGTACGCGCCGAATCTTGAGATGCGTCAAGCGAGTTGTGCGGCACT
CCACTCCCACCCTGCGCTCGATCTCTGTCGGAAAGTGCAAGACTCTTCTC
ACAAGCCCGGCTGCATTGATGGCCGCGCTAGGGTGGCGCACATCATTGGC
GGGATCGTTCCTGTTTCCTCCAAGAAGCACTGCGTCGCTCCGAGGCTCAC
CCGGGTGGCGCTCAGCGACGGGTCCACCGGCATGGCCAAAGTGGGCAAGG
CCGTCGCGGCGGGGGTGTGGCCAGCGCTGGAGAAGCTTAGCCTGTCCCAC
TGCCGCGCGAATGCAGGCCGTTTCAAGGAGCTTGCCCACGGTCTCCGCAC
GGGGCACGCTCCAAACCTGCGTGTGCTGTACTGGGATGACCAGTCCTCCA
TCAGGGAGAAATCAGTCGACGACGTCATTCTGTTGGCCCTGTCCGCTCGC
ATGTGCCCTCTCATCGAACGGCTGAGTTTCACTGGCAACCGCTTTTGGCC
GGAGTATCGCATCCGCTTCCTGATAGAAGCGTTCCGGGGTTGCCCGAGTC
TGCGGGGGCTCTCGATGGATTGCTCCCGGCAGCCCCACGACGATTTGCGG
GCCTTGACCGACCGTGCCGGCGGGGTACGCGCCGAATCTTGA
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