mRNA_S-dermatodea_contig12571.1584.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12571.1584.1
Unique NamemRNA_S-dermatodea_contig12571.1584.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12571.1584.1 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.340e-43
Identity = 152/352 (43.18%), Postives = 175/352 (49.72%), Query Frame = 1 
Query:    4 QVLLGKTVPPDEAGFDGCLEQSVERAALYLDPANTSTEVAPGVTFGKLDEMVSALREQIIAGPAT----QGPVFNFFADASPGRGESEVVSTSREAAAKPPLPPLPPPSN-----------GTFNPAPAAAVRVGGESPGYQSAPXXXXXXXAPGGPD---------HPGQQEMVLPLPGSLAP--PPR--PAVGADEALPVSAS-------------PRHAVGVGDGARSPTAGQLGRQASQMEEGVLPPVVSQNQN---QPRPSPPAHAGDPVLPKRERRTKARS--RGPAPPYAPAPP---GNLYAT--QPGHP-----TPPLRHPQH--LRSPFPQXXXXXLTPVQMG 885
            +VLLGKTVPPDEA FD CL QSVERA+LYLDP+N S EVAPGV++  LD+MVS LR QIIAGPA         FNFF + S G G S       + AAK   P   PP              +F P PAA  R G E  GYQ          A                   ++ LP+ G + P  PP   P VG D   P + S             P   +G+G    SPT GQLGRQASQMEEG+LPPV +   +   Q  P           PKRERR + +S  RGP P     PP   GN +AT  QP H      +PPLRH Q   LRSPFPQ     LTPVQMG
Sbjct:  286 KVLLGKTVPPDEADFDDCLAQSVERASLYLDPSNGSKEVAPGVSYATLDDMVSTLRSQIIAGPAATAEGDSAAFNFFGEPSSGCGSSSKAEA--DGAAKGTTPREAPPXXXXXXXXXXXXVSSFQP-PAAEARGGEELSGYQLQQQRPPKSPATSARSPIKXXXXXXXXXXXKLGLPMSGQVGPLGPPAAPPVVGIDVTPPPARSSPSLGHRGGGSQRPAEDLGLG----SPTTGQLGRQASQMEEGILPPVAANQPSHLQQASPQQQHQVDQAAFPKRERRPRPQSSSRGPGPSAGGIPPPSTGN-HATSQQPRHRHSELGSPPLRHQQQQLLRSPFPQQPTPPLTPVQMG 629
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BLAST of mRNA_S-dermatodea_contig12571.1584.1 vs. uniprot
Match: D7G7T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.030e-24
Identity = 73/142 (51.41%), Postives = 84/142 (59.15%), Query Frame = 1 
Query:    4 QVLLGKTVPPDEAGFDGCLEQSVERAALYLDPANTSTEVAPGVTFGKLDEMVSALREQIIAGPAT----QGPVFNFFADASPGRGESEVVSTSREAAAKPPLPPLPPPSN-----------GTFNPAPAAAVRVGGESPGYQ 384
            +VLLGKT+PPDEA FD CL QSVERA+LYLDP+N S EVAPGV++  LD+MVS LR QIIAGPA         FNFF + S G G S       + AAK   P   PP              +F P PAA+ R G E  GYQ
Sbjct:  329 KVLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDMVSTLRSQIIAGPAAAAEGDSAAFNFFGEPSSGGGSSSKAEA--DGAAKGTTPREAPPXXXXXXXXXXXNVSSFQP-PAASARGGEELSGYQ 467
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12571.1584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV56_9PHAE1.340e-4343.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7T6_ECTSI1.030e-2451.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12571contigS-dermatodea_contig12571:5786..6871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7G7T6
EggNOG OGs2CXH2@1,2RXF1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1086
Cds size1086
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.1452377-CDS-S-dermatodea_contig12571:5785..68711622924253.1452377-CDS-S-dermatodea_contig12571:5785..6871Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12571 5786..6871 -
1694079127.1026475-CDS-S-dermatodea_contig12571:5785..68711694079127.1026475-CDS-S-dermatodea_contig12571:5785..6871Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12571 5786..6871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12571.1584.1prot_S-dermatodea_contig12571.1584.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12571 5786..6871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12571.1584.1

>prot_S-dermatodea_contig12571.1584.1 ID=prot_S-dermatodea_contig12571.1584.1|Name=mRNA_S-dermatodea_contig12571.1584.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=362bp
MQVLLGKTVPPDEAGFDGCLEQSVERAALYLDPANTSTEVAPGVTFGKLD
EMVSALREQIIAGPATQGPVFNFFADASPGRGESEVVSTSREAAAKPPLP
PLPPPSNGTFNPAPAAAVRVGGESPGYQSAPPPPPPTTAPGGPDHPGQQE
MVLPLPGSLAPPPRPAVGADEALPVSASPRHAVGVGDGARSPTAGQLGRQ
ASQMEEGVLPPVVSQNQNQPRPSPPAHAGDPVLPKRERRTKARSRGPAPP
YAPAPPGNLYATQPGHPTPPLRHPQHLRSPFPQQPTPPLTPVQMGQGLAP
PVPPPGVPTPAPPLGVPPGGSPNLSYGGGGGGWGYAQQPQLVQQHSYRPP
LHPTPPTMHPEH
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mRNA from alignment at S-dermatodea_contig12571:5786..6871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12571.1584.1 ID=mRNA_S-dermatodea_contig12571.1584.1|Name=mRNA_S-dermatodea_contig12571.1584.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1086bp|location=Sequence derived from alignment at S-dermatodea_contig12571:5786..6871- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTGCTTCTCGGAAAAACCGTGCCACCCGACGAGGCCGGCTTCGA
CGGCTGCCTGGAGCAAAGCGTGGAGCGCGCGGCGCTCTACCTGGACCCTG
CCAATACCTCCACGGAAGTCGCTCCGGGGGTGACCTTCGGGAAGCTCGAC
GAGATGGTGTCGGCCCTTCGCGAGCAGATCATCGCCGGCCCCGCCACCCA
GGGCCCCGTGTTCAACTTCTTCGCTGACGCGTCTCCGGGGAGAGGGGAGA
GCGAAGTCGTGTCAACCTCCCGGGAAGCCGCCGCCAAGCCGCCACTGCCC
CCGTTGCCTCCGCCCTCCAACGGCACCTTCAACCCCGCGCCCGCGGCGGC
GGTTCGAGTCGGAGGAGAGTCCCCGGGGTACCAGTCGGCGCCGCCGCCGC
CGCCGCCAACGACGGCGCCGGGCGGACCCGATCACCCGGGGCAGCAGGAG
ATGGTTCTGCCTCTGCCGGGTTCACTGGCGCCGCCCCCCCGACCCGCTGT
CGGTGCGGACGAGGCGCTTCCGGTGAGCGCCTCGCCGAGACACGCCGTGG
GCGTGGGCGACGGCGCGCGGTCTCCAACGGCAGGGCAGCTGGGACGGCAG
GCTTCGCAGATGGAGGAGGGCGTACTGCCGCCGGTGGTGAGCCAGAACCA
GAACCAGCCCCGCCCCTCGCCGCCCGCCCACGCGGGAGACCCAGTGCTGC
CGAAGCGGGAGAGGAGGACGAAGGCCCGCTCTAGGGGACCCGCTCCGCCG
TACGCCCCGGCTCCGCCTGGCAACCTCTACGCCACGCAACCCGGGCACCC
TACCCCTCCGTTGCGCCACCCACAGCACTTGAGATCGCCGTTCCCCCAGC
AGCCCACCCCGCCCTTGACACCCGTGCAGATGGGCCAGGGGCTCGCCCCC
CCGGTGCCCCCTCCTGGCGTGCCCACCCCGGCGCCACCGCTTGGCGTGCC
GCCCGGAGGGTCGCCAAACCTGAGCTACGGTGGCGGCGGCGGCGGTTGGG
GGTACGCCCAGCAGCCGCAGCTGGTCCAGCAGCACTCGTACAGGCCGCCG
CTTCACCCGACCCCGCCGACCATGCACCCCGAGCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12571:5786..6871-

>mRNA_S-dermatodea_contig12571.1584.1 ID=mRNA_S-dermatodea_contig12571.1584.1|Name=mRNA_S-dermatodea_contig12571.1584.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at S-dermatodea_contig12571:5786..6871- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTGCTTCTCGGAAAAACCGTGCCACCCGACGAGGCCGGCTTCGA
CGGCTGCCTGGAGCAAAGCGTGGAGCGCGCGGCGCTCTACCTGGACCCTG
CCAATACCTCCACGGAAGTCGCTCCGGGGGTGACCTTCGGGAAGCTCGAC
GAGATGGTGTCGGCCCTTCGCGAGCAGATCATCGCCGGCCCCGCCACCCA
GGGCCCCGTGTTCAACTTCTTCGCTGACGCGTCTCCGGGGAGAGGGGAGA
GCGAAGTCGTGTCAACCTCCCGGGAAGCCGCCGCCAAGCCGCCACTGCCC
CCGTTGCCTCCGCCCTCCAACGGCACCTTCAACCCCGCGCCCGCGGCGGC
GGTTCGAGTCGGAGGAGAGTCCCCGGGGTACCAGTCGGCGCCGCCGCCGC
CGCCGCCAACGACGGCGCCGGGCGGACCCGATCACCCGGGGCAGCAGGAG
ATGGTTCTGCCTCTGCCGGGTTCACTGGCGCCGCCCCCCCGACCCGCTGT
CGGTGCGGACGAGGCGCTTCCGGTGAGCGCCTCGCCGAGACACGCCGTGG
GCGTGGGCGACGGCGCGCGGTCTCCAACGGCAGGGCAGCTGGGACGGCAG
GCTTCGCAGATGGAGGAGGGCGTACTGCCGCCGGTGGTGAGCCAGAACCA
GAACCAGCCCCGCCCCTCGCCGCCCGCCCACGCGGGAGACCCAGTGCTGC
CGAAGCGGGAGAGGAGGACGAAGGCCCGCTCTAGGGGACCCGCTCCGCCG
TACGCCCCGGCTCCGCCTGGCAACCTCTACGCCACGCAACCCGGGCACCC
TACCCCTCCGTTGCGCCACCCACAGCACTTGAGATCGCCGTTCCCCCAGC
AGCCCACCCCGCCCTTGACACCCGTGCAGATGGGCCAGGGGCTCGCCCCC
CCGGTGCCCCCTCCTGGCGTGCCCACCCCGGCGCCACCGCTTGGCGTGCC
GCCCGGAGGGTCGCCAAACCTGAGCTACGGTGGCGGCGGCGGCGGTTGGG
GGTACGCCCAGCAGCCGCAGCTGGTCCAGCAGCACTCGTACAGGCCGCCG
CTTCACCCGACCCCGCCGACCATGCACCCCGAGCACATGCAGGTGCTTCT
CGGAAAAACCGTGCCACCCGACGAGGCCGGCTTCGACGGCTGCCTGGAGC
AAAGCGTGGAGCGCGCGGCGCTCTACCTGGACCCTGCCAATACCTCCACG
GAAGTCGCTCCGGGGGTGACCTTCGGGAAGCTCGACGAGATGGTGTCGGC
CCTTCGCGAGCAGATCATCGCCGGCCCCGCCACCCAGGGCCCCGTGTTCA
ACTTCTTCGCTGACGCGTCTCCGGGGAGAGGGGAGAGCGAAGTCGTGTCA
ACCTCCCGGGAAGCCGCCGCCAAGCCGCCACTGCCCCCGTTGCCTCCGCC
CTCCAACGGCACCTTCAACCCCGCGCCCGCGGCGGCGGTTCGAGTCGGAG
GAGAGTCCCCGGGGTACCAGTCGGCGCCGCCGCCGCCGCCGCCAACGACG
GCGCCGGGCGGACCCGATCACCCGGGGCAGCAGGAGATGGTTCTGCCTCT
GCCGGGTTCACTGGCGCCGCCCCCCCGACCCGCTGTCGGTGCGGACGAGG
CGCTTCCGGTGAGCGCCTCGCCGAGACACGCCGTGGGCGTGGGCGACGGC
GCGCGGTCTCCAACGGCAGGGCAGCTGGGACGGCAGGCTTCGCAGATGGA
GGAGGGCGTACTGCCGCCGGTGGTGAGCCAGAACCAGAACCAGCCCCGCC
CCTCGCCGCCCGCCCACGCGGGAGACCCAGTGCTGCCGAAGCGGGAGAGG
AGGACGAAGGCCCGCTCTAGGGGACCCGCTCCGCCGTACGCCCCGGCTCC
GCCTGGCAACCTCTACGCCACGCAACCCGGGCACCCTACCCCTCCGTTGC
GCCACCCACAGCACTTGAGATCGCCGTTCCCCCAGCAGCCCACCCCGCCC
TTGACACCCGTGCAGATGGGCCAGGGGCTCGCCCCCCCGGTGCCCCCTCC
TGGCGTGCCCACCCCGGCGCCACCGCTTGGCGTGCCGCCCGGAGGGTCGC
CAAACCTGAGCTACGGTGGCGGCGGCGGCGGTTGGGGGTACGCCCAGCAG
CCGCAGCTGGTCCAGCAGCACTCGTACAGGCCGCCGCTTCACCCGACCCC
GCCGACCATGCACCCCGAGCAC
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