mRNA_S-dermatodea_contig12563.1583.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12563.1583.1
Unique NamemRNA_S-dermatodea_contig12563.1583.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: D7FXW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW7_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 4.580e-104
Identity = 181/215 (84.19%), Postives = 201/215 (93.49%), Query Frame = 1 
Query:    1 AASKVGMKATSIGSLIRQAPWLALERIDGQMLPVARFLRRAGVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLKIR 645
            A+ +VG+K+T+IGSLIRQAPWL L+ IDGQMLPV RFLR AGVVD+ERV+R+YP++LC+SI+GELAPRVRFLW+DVGVSEEDLPRVLQTFPL+FALPL+RM+DV+  XXXXXXXXXXXXXXXXXXXX   GLERERHM+GVVRYLK+LGVQNVGRFVSRLPPVLGYDV TNL PKMDYLVE MGLSVYDVLTFPAYFSYPLDTVIEPRTEFL IR
Sbjct:  354 ASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLRIAGVVDVERVLRAYPKVLCASIRGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFALPLSRMKDVMAFXXXXXXXXXXXXXXXXXXXXSLLGLERERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIR 568
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: A0A6H5KUV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV8_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 2.950e-98
Identity = 180/215 (83.72%), Postives = 200/215 (93.02%), Query Frame = 1 
Query:    1 AASKVGMKATSIGSLIRQAPWLALERIDGQMLPVARFLRRAGVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLKIR 645
            A+ +VG+K+T+IGSLIRQAPWL L+ IDGQMLPV RFLR AGV D+ERV+R+YP++L +SI+GELAPRVRFLW+DVGVSEEDLPRVLQTFPL+FALPL+RM+DV+  XXXXXXXXXXXXXXXXXXXXX  GLERERHM+GVVRYLK+LGVQNVGRFVSRLPPVLGYDV TNL PKMDYLVE MGLSVYDVLTFPAYFSYPLDTVIEPRTEFL IR
Sbjct:  814 ASEEVGIKSTNIGSLIRQAPWLVLQPIDGQMLPVVRFLRIAGVADVERVLRAYPKVLSASIRGELAPRVRFLWSDVGVSEEDLPRVLQTFPLVFALPLSRMKDVMAFXXXXXXXXXXXXXXXXXXXXXLLGLERERHMAGVVRYLKRLGVQNVGRFVSRLPPVLGYDVETNLAPKMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIR 1028
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: A0A835Z724_9STRA (mTERF-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z724_9STRA)

HSP 1 Score: 241 bits (616), Expect = 6.040e-75
Identity = 133/220 (60.45%), Postives = 171/220 (77.73%), Query Frame = 1 
Query:    7 SKVGMKATSIGS------LIRQAPWLALERIDGQMLPVARFLRRA-GVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLKIR 645
            ++VGM+A S  S      ++RQAPWLA   ++ Q+ PVAR+L+ + G+ D++RV+R+YP+ILC SI  +L PRV FL  +VG++EED+PRV+QTFPLLFA+P+ RM+ V            XXXXXXXXXXX   GLE E+H+  VV Y++ LG+QN+GRFVSRLPPVLGYDV+ NL+PKMDYLV  MGLSVYDVLTFPAYFSYPL+++IEPRTEFLK+R
Sbjct:  100 AEVGMRAASDDSSAVSLNVLRQAPWLAEHDLETQLRPVARYLQESLGIRDMQRVLRAYPQILCCSITKDLEPRVWFLTEEVGINEEDVPRVVQTFPLLFAVPVERMRGVYGLLASELLITRXXXXXXXXXXXSLLGLEPEKHVRAVVAYMRSLGIQNIGRFVSRLPPVLGYDVSNNLMPKMDYLVAMMGLSVYDVLTFPAYFSYPLESIIEPRTEFLKLR 319
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: A0A7S2D3S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3S4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.890e-40
Identity = 86/214 (40.19%), Postives = 115/214 (53.74%), Query Frame = 1 
Query:   10 KVGMKATSIGSLIRQAPWLALERIDGQMLPVARFLRRAGVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXX--GLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLKIR 645
            +VG K   IGSL+R+APWL    ++ QM PV RFL +  V  +E V+R+YP++L + +K EL PR+ FL  D+ +S  D                        XX                        GL+   H    V +L+++GV+N+GRFV RLPPVLGYDV  N+ PK +YL + +GLS YD+  FPAYFSYPLD VI PR  +L  R
Sbjct:  231 QVGFKEDQIGSLVRKAPWLLDGNLETQMGPVVRFLTKLQVRRIETVIRAYPQVLLTDVKTELLPRIEFLMKDLDLSLADASSXXXXXXXXXXXXXXXXXXXXXXXLSNDRLGIAPESVSKVFRSFPSLLGLDTVEHFDVSVSFLQEIGVENIGRFVLRLPPVLGYDVEINMRPKWEYLTDTLGLSTYDITRFPAYFSYPLDKVIMPRASYLSDR 444
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: A0A7S3JTN4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTN4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.160e-33
Identity = 81/204 (39.71%), Postives = 116/204 (56.86%), Query Frame = 1 
Query:   34 IGSLIRQAPWLALERIDGQMLPVARFLRR-AGVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQD-VVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLK 639
            + +L RQAPWL    +  Q+ PV  FLR  AGV  L+ V+ ++PR        EL PR+  L    GV+E    ++++TFPL+  L ++   D V+                         G++ +  M   + +L+++GVQN+ RFV+RLPPVL YDV + L PKM + V++  LS+YDV+ FPAYFSYPLD VIEPR  FL+
Sbjct:  249 LSALYRQAPWLLAASVGSQLRPVTNFLRHDAGVQRLDIVISAFPRCFLLDPDRELRPRLYAL-KKYGVTEPG--KIIETFPLVLGLDVSEQTDPVIHFWLNEIGIHRDDIPKICRAFPSLLGVDVQT-MQKSIDFLREIGVQNIARFVTRLPPVLAYDVESILRPKMTFAVQN-ALSIYDVVRFPAYFSYPLDQVIEPRAAFLQ 447
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: F0Y3H4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3H4_AURAN)

HSP 1 Score: 128 bits (321), Expect = 8.040e-31
Identity = 104/204 (50.98%), Postives = 125/204 (61.27%), Query Frame = 1 
Query:   31 SIGSLIRQAPWLALERIDGQMLPVARFLR-RAGVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLK 639
            SIGSL R  PWL    +   +   A  LR   GV ++E VVR+YPR L S  +  L P +  L    GV E DL  +++ FPLLF L  A M  V+D         XXXXXXXXXXXXXXX       M   V++L+ +GV N  RFV+RLPPVL YDV+ +L PKM  LV+   LSVYDV+ FPAYFSYPLD VI+PRT FLK
Sbjct:  241 SIGSLYRANPWLLAAPV-ATVRDAATVLRDEVGVTNVENVVRAYPRALLSDRESLLRP-LDVLRERAGVDEADLASLVEAFPLLFGLDDA-MGPVLDFWLDELKINXXXXXXXXXXXXXXXXXXVAT-MRANVKFLEGIGVVNTARFVTRLPPVLAYDVDRDLRPKMAELVK-CALSVYDVVRFPAYFSYPLDGVIKPRTAFLK 439
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: A0A7S3VHI0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VHI0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.990e-29
Identity = 69/184 (37.50%), Postives = 104/184 (56.52%), Query Frame = 1 
Query:   88 QMLPVARFLR-RAGVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFL 636
            +M   A FLR   G+ +L +V+ +YP +    I  ++ P V FL+ D+G+ E+++PRVL+  P+LF     +MQ VVD                          +    M+ VV +L ++GV N+GRF++RLPPVLGY V  +LVPK +YL      + ++V  FPAYF+YPL+ VI+ R E+L
Sbjct:  510 RMFKQAEFLRDEVGISNLGKVLAAYPNLFTLDIDSQIIPAVNFLF-DLGMDEDEVPRVLEAHPILFETTTIQMQSVVDFLLELEVSEEILGSIFRAFPALLTQ-DTTTTMTEVVSFLGEIGVTNIGRFITRLPPVLGYSVEKDLVPKWNYLNTVSQFASFEVSKFPAYFAYPLERVIKSRYEYL 691
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: R7Q6P9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6P9_CHOCR)

HSP 1 Score: 121 bits (304), Expect = 1.650e-28
Identity = 96/219 (43.84%), Postives = 140/219 (63.93%), Query Frame = 1 
Query:   13 VGMKATSIGSLIRQAPWLALERIDGQMLPVARFLRRAGVVDL------ERVVRSYPRILCSSIKGELAPRVRFLWADV-GVSEEDLPRVLQTFPLLFALPL-ARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLKIR 645
            VG    ++ SL+R+APW+ +  I  +M+P   +L+R  V+DL      ++ +R+ P +L +S   +   +V    +DV G++   L   L++FP L    + A +     XXXXXXXXXXXXXXXXXXXXXXXX           V Y ++ G+ NVGR V RLPP+LGYD++TN++PKM+Y+ +++GLS YD+LTFP YFSY  +  IEPRT+FL+ +
Sbjct:  209 VGFSLPNLRSLLRRAPWVLVYDIGSEMIPAISYLKR--VLDLPNRAPVDQFIRARPLLLGTS--PDAMQKVTDFMSDVVGLTPTMLSVALRSFPPLLTCSIDATLAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNYFRRKGIINVGRIVKRLPPILGYDLDTNIIPKMEYIEQELGLSSYDILTFPGYFSYSFEKCIEPRTKFLQAK 423
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: A0A7S2YH38_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YH38_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.500e-28
Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 1 
Query:  124 GVVDLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLK 639
            G  DL +VV +YP +L    + ++ P   +L  ++G+ E DLPRVLQ +P L  LP+ RM+ V +                         L+ E +M  VV +L  +GV ++GRF++R+PP+LGY V+  L+PK  +L      + ++V  FPAYFSYPL+ VI+ R E+++
Sbjct:  543 GTADLGKVVAAYPSVLLLDAQEQILPNAEYLMDNLGICEGDLPRVLQLYPSLLGLPIERMEAVANFLRSLGVESEEMSSMFRSFPALLT-LDVETNMKPVVAFLHSIGVMDIGRFLTRIPPILGYSVDQELMPKWKHLKMVSSDARFEVTKFPAYFSYPLERVIKARYEYIQ 713
[Close]
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Match: A0A7S1FZA0_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZA0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.810e-28
Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 1 
Query:  133 DLERVVRSYPRILCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVDXXXXXXXXXXXXXXXXXXXXXXXXGLERERHMSGVVRYLKKLGVQNVGRFVSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLKIR 645
            D  +++ SYP  L      ++ P + FL  +VG+   D+ RVLQ+FP +  +P+  M++ +                          L+ E  M  VV +LK +G++NVGRFVSRLPPVLGY V   L+PK  YL +  G + +++  FPA FSYPLD VI  R E+L ++
Sbjct:  473 DFHKIIVSYPDALMLDPSTQVLPVINFLHFEVGLVASDIRRVLQSFPTVLGIPVLNMKERIQFLDSLGIHGDNLCKIIRAFPHIMT-LDVETRMMPVVEFLKSIGIENVGRFVSRLPPVLGYSVENELLPKWTYLTKTCGYANFEIYRFPACFSYPLDKVIAARHEYLVMK 642
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12563.1583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXW7_ECTSI4.580e-10484.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUV8_9PHAE2.950e-9883.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z724_9STRA6.040e-7560.45mTERF-domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2D3S4_9STRA1.890e-4040.19Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3JTN4_9STRA3.160e-3339.71Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y3H4_AURAN8.040e-3150.98Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3VHI0_9STRA6.990e-2937.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
R7Q6P9_CHOCR1.650e-2843.84Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2YH38_9STRA4.500e-2836.05Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1FZA0_9STRA7.810e-2836.84Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12563contigS-dermatodea_contig12563:125..5988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue4.1e-86
Seed eggNOG ortholog2880.D7FXW7
KEGG koko:K15032
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-16_005120.1
Exons4
Model size648
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12563.1583.1prot_S-dermatodea_contig12563.1583.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12563 143..5988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.0620875-UTR-S-dermatodea_contig12563:124..1421622924253.0620875-UTR-S-dermatodea_contig12563:124..142Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12563 125..142 +
1694079127.0488036-UTR-S-dermatodea_contig12563:124..1421694079127.0488036-UTR-S-dermatodea_contig12563:124..142Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12563 125..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924253.0723495-CDS-S-dermatodea_contig12563:142..3281622924253.0723495-CDS-S-dermatodea_contig12563:142..328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 143..328 +
1694079127.0637507-CDS-S-dermatodea_contig12563:142..3281694079127.0637507-CDS-S-dermatodea_contig12563:142..328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 143..328 +
1622924253.0817327-CDS-S-dermatodea_contig12563:2411..25781622924253.0817327-CDS-S-dermatodea_contig12563:2411..2578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 2412..2578 +
1694079127.0717547-CDS-S-dermatodea_contig12563:2411..25781694079127.0717547-CDS-S-dermatodea_contig12563:2411..2578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 2412..2578 +
1622924253.0916362-CDS-S-dermatodea_contig12563:4030..41841622924253.0916362-CDS-S-dermatodea_contig12563:4030..4184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 4031..4184 +
1694079127.0798187-CDS-S-dermatodea_contig12563:4030..41841694079127.0798187-CDS-S-dermatodea_contig12563:4030..4184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 4031..4184 +
1622924253.1001456-CDS-S-dermatodea_contig12563:5865..59881622924253.1001456-CDS-S-dermatodea_contig12563:5865..5988Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 5866..5988 +
1694079127.0919816-CDS-S-dermatodea_contig12563:5865..59881694079127.0919816-CDS-S-dermatodea_contig12563:5865..5988Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12563 5866..5988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12563.1583.1

>prot_S-dermatodea_contig12563.1583.1 ID=prot_S-dermatodea_contig12563.1583.1|Name=mRNA_S-dermatodea_contig12563.1583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=210bp
MKATSIGSLIRQAPWLALERIDGQMLPVARFLRRAGVVDLERVVRSYPRI
LCSSIKGELAPRVRFLWADVGVSEEDLPRVLQTFPLLFALPLARMQDVVD
FLSVDLTINDKDIAKIIRAFPSLLGLERERHMSGVVRYLKKLGVQNVGRF
VSRLPPVLGYDVNTNLVPKMDYLVEDMGLSVYDVLTFPAYFSYPLDTVIE
PRTEFLKIR*
back to top

mRNA from alignment at S-dermatodea_contig12563:125..5988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12563.1583.1 ID=mRNA_S-dermatodea_contig12563.1583.1|Name=mRNA_S-dermatodea_contig12563.1583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5864bp|location=Sequence derived from alignment at S-dermatodea_contig12563:125..5988+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCTTCTAAGGTGGGCATGAAGGCGACCAGCATCGGGTCACTCATCCG
ACAAGCACCTTGGCTGGCCCTTGAGCGGATTGACGGGCAGATGCTACCGG
TGGCGAGGTTTTTGAGGAGGGCGGGCGTGGTGGACTTGGAGAGGGTGGTG
AGGTCGTACCCGAGGATACTTTGCTCGAGCATCAAGGGCGAGCTCGCTCC
GAGGGTAAGATTAGTGCATGTGTGTATGTGTGTGTGCGTGGGTGGTTTGA
TTGATAGAATGATGGATGATTGATGTGTTTGTTGTGGTGTTGATGTTGTT
GGTGTGCGTATTCTAGTTATGGTGTGTGCGCCGTTTTTAAGTGTTAGAGC
TATTATATGTATATCGTGTCATGGTCTATAATGGCAACGTGGCACTCATA
AGGAGCACACAGCAGTTAACAACAAGCAAATGTAAAATCTACGAAGCGTC
TTATGATCGTGAATCATATTATGAAACATGTGAAGAAGGCAGTGTGGCCT
TAAGAGCAAAACAGCTCTAAATTTGCTTGTACAACATCTGCACAAATGTT
CTGGCCAAAAATTGGACCTTTTCTTTTTCTCCCTCTTTTTTATTTTTTGC
ACACGTATGATATGATACAGTAATAGACCGTCTTTTCCGAGGTAGGTCCG
TCTGTGGTCGCAAGAAATCTGTCATCCAATCTCGCTTATCTTATGTTATC
TTATCCCCGGTACAGTATGTTCTTACCTTAGATTCTTGTCGCGAACCCAT
CGGGTTACTTCGGCACTCCCTCAGCTCGACGACGTTTTCTCAGATTTCCT
TGATTTGATTGATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTT
TATTTTATTTTATTTGCACACGTATAGCCTATCGGCTTAATCCGACCTAT
CCGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAATAACTAATCA
GAACTCTACTTCTACTATACATCGTACCGTCCCTGGTGCCAGGTACTTAC
TATGGTACAATAAATAAGAAATAGCACCCCAGATATAGAGAAAACGCTAG
AAGAGAACTCGGACTCAAACAACGCTCCCTCGCCTCCCCACAGGTCCTTT
TTAAGCTACGGCCAGTCCTTGTATCACAACAAAATATATCACATTAACAA
GTCGAAGAGTATACTGTATGCGAAGCTATAACAGGGGGTAAGTTCTGCTG
AGCCTAAGTGTTGCACTTGGGGCGGCACCTGGACTGTGTTCTACTAAATA
TATTTTATTTCTGCTGAGCCCAAGTATTGCGCTTGGGGAGTCACCCGGAC
CATGCTCTACTACAAGTAAGAATATTTTCTTTCGGGCGGCCGATGATATG
GAAGGAATCATGTCAGTTTTTGTGTATGATACAAAAAAACAAAGTCCACC
CGGGATGGTCCTCTCTGTCCCGCCGATGAGTTGTGGATCGCACACTTTCT
TTCTATCTTCTGTTTGTGTGTTCTGTTTCTTTCTAGACAGTAGGGGGGGG
GGCATGATTGTTATTGCCGTTGGGCGGTTGGTTTGATAAACAAACTCAAA
CATATAGGTACAAGCGTTGGGTCTGTAACGCTATGCTCCTCCGAAACGAA
AGCGAAAGCCGACGGAAATCTTGAGGATGACCCCCTGGGTTCGGGCTCCT
CGCGAGGGCTGGTCTCGTGATGGGTCACACCTAGTGGGTTTGGGTCTGAC
ACGAGGTTCAGCCAAGGTCGACGGACATTGTGGGAGACACGGGGCGGCAC
GCAACCCCGTGAGATTGGGCCTCAACCCTGGATGCAGGCGTACTCACCTC
CAACGGTCATGACTTGTGATGTCATAATCCAGAGACATGAAACGCCATGG
ACGAATCTTACGTGTCATCATAGTCTAGCGACCTTACGCGTCATAGTCTA
GTAACGTGGCACTCACACTATTACTAGCATATCTTTACTAATTAATTCCG
CTTTCAGTTTTTTTTCACACCATTTCCTGTGCGATTTTGAGGCCGATTCC
ACACTAGTTCCTTTACGATTTTTGAGGCCGATTCCACACTATTTCCTGTG
CGGTTTTTTAGGCCAATTTCCACACTAATTCCTATACGATTTCGATGCCG
ATTTTTACACCACACTCCTACGTGTATAGTATACAATTTTGAGGCCAAAC
AACTTGATGTGTGTGTTGAGCGCCAAGTGCTGAAAAGAGGAGGCTGTTGC
ACCTCACCGGCGTAGCCATGGCTACCTACTCGTGGGTTAAACTTGGCGCC
CAATTGTATCCCGACTCCCGACCGCTCCATCGCGCAGGTTCGGTTTTTGT
GGGCGGACGTAGGCGTGTCCGAGGAGGACCTGCCGCGGGTGCTGCAAACG
TTCCCCCTGCTGTTCGCACTGCCTCTGGCGCGCATGCAAGACGTGGTGGA
CTTCCTGTCGGTGGATCTGACCATCAATGACAAGGATATCGCCAAGATTA
TCAGGTACTTGTGTAAATATTATATTAGATTATCAGGTATAAATATGATA
TTAATATAGAATATTTTGTGTCGTTTCATATGTAGATGAGTTGGCTTGTG
TAAGGCGGTTGTCCCTACAAGTAGGTGATTTGAGAAGATTTGTTGTACCC
ATTTATCTTTTAATTGGTACAGCAGTATGTGCGTATCATATACAAGTATT
AGTAGCGCTTTGCTCGTTTTTAAATAGGGATCGTGAAGTAGGATCTCGAG
GCTCTTTTCTTGTTTTATAGGAGGGTTTTTGCGAAGGTCTCGGAACGTTT
TTTGTAATTTTATGGGCCGTGTGATGAAGCCACGACGCGCCTACCGAGGC
GCACCTCACGGGTGTAGCCTTGGCTACCTATTTTACTAGGATTATAATGA
CAGTGGTTGTTCTTCAGAAGTGCCACTATTACCATAATTATCATCGTCAT
CGCCATCACCATCGCAACTCTCATCATCACAATCATCACCATTACCATCA
TTACCATTACCATCATTATCATTACCATCATTACCATTACCATCATCACC
TATTTTACTAGGATTATTATGACAGTGGTTGTGCTTCAGATTTGCCACTG
TTACCATCATTCTCATCGTCATCATCATAACCATCGCAACCCTCATCATC
ACAATCATCACCATTGCCATAATTACCATTACCATCATTACCATTGCCAT
AATTACCATTACCATCGTCATCATCATCACCATCACCACCCTCGTCTTCA
CAATCATTACCATTACCATTATTACCATTACCATTATTACCATTACCATC
ATTACCATTACCACCATTACCATCATCATCACCACCACCATCACCACCAT
CATCACCATGATGACTACAATCGCCACAAACAACCTTGACCCTTCTGGTA
CTACTGTTTGGAGCGCCGATTAGCAAGTAATGAGGCATGCTTGAAGCGGG
GCCCTGGGAACTCCATGGGTTATGACGCAGGAATGAGAGAGAATGGAGCC
CAAGGGAAACGGGGCTGTAACTGTCGACTGGCATCGAGAGAGTTTTTGCT
CGTTTCGGAGAGCCATATTAATACTAACCAGTTTCAAGCCACGGCTGTCG
TCCGTGAGGTGTGCGTGGGCAGGACGATGTGCGGGTTGGGTTTGGAGGAT
ACGGTGTGGCGACCCACGGCAGGCGTAGCGAAAGCCGTATATCTGTATAG
GATTTATACACAATCGGGCTTCAGCTGAAACAACTTGAAAGTGGGAGTCT
AGAAATCTCTGTGAAAATAAGATGGTTCATTCTTGTATTAATTAATAAGG
ATTTAATAGTACTAATACTAATACTAATACTAATACTAATACGAATACTA
ACTTAATAGTCCGAAAGGGATATTCTTGCATAACAACGATGTCCTCCCGA
CCCGCCCTCCACCGCTTTCGACTGGCCATGTATGTATACACGCACGTTTC
GCGCAGGGCGTTTCCGTCACTGCTCGGGCTAGAGAGGGAGCGGCACATGT
CTGGCGTGGTGCGATACCTGAAGAAACTAGGGGTGCAGAATGTTGGGCGG
TTCGTATCTCGACTACCGCCTGTCCTGGGTTATGACGTCAACACCAATCT
CGTACCCAAGGTCAGTGGGCATCGGTCATTTTTTTTATACGTATATATAT
ATATACACATATATTGACTGGTTCTATATCTGGGGGTTACTACTTCTATT
TTCTTGTGCCATGTCTGACCACAAGTCGGGTTGGATTAAGCCGATCGGCT
ACACCTGTGCAAATCAATCAATCAATCAATAATAAGTACCAGGGACGGTA
TGGTGTGTTGCAGAAGTAAGAGTTTTGACTGGTATTTTCCTTCTTGACTC
TTTGCTGTACTATATTCTATACTCCGGAGTATATAGCATCCGACTACAAG
AAGTCGGGTACCAGGTTTTATGCCCATCGGTTACAGACAGTACTTGTATA
CATGTGCAAATCCATCTATCCAGTAAAAAACAAAAACGATTCGTTGCGTG
GTTAGAGCCTATTGGTTTATGACGTTAAGGGTAACCCCGCACCCATTGTC
AGGAAGCTTTTTGCGGTCGCTTCGGAGTTGCCGTCTGGATTTTGCGGCGC
TGATTGCGCAGAAGAAGAAGTTTGTTTTAGTATCGCGGAACGCGCTCGCG
AGAGCGTGAGTAAGCAAAATCCGAGAAATCGGTCACCTGCGGGAGTGCCG
AACCCAATGCATTCCATTCGCGATAAGAAGTCAAAGATAGGAACCGGAGA
TAAGAGAGATGGGATGATCCCTTGTGACCACAGACGGACCTCGGAAAGGA
CGGTGTATCACGTGTGCAAAAAAGGAAATAATAGAGTATCATGTCACCCT
AGGACTCTCCGGCGATATAAAGGGGAAGAGTCGGCAGAGGTAGTGCTGTT
GCTGTTGTTCTATTATAGCTCTCACGTGGTGCTCGCGTTTTTGCCTGCGG
GATTCGTTCGATGTGGTGATTTAACTGTGAACGCTCAGCACCACTGTGGC
CATGATGAGCATCAGCGTCAAATTTTAACGTTGATCACGATGAACATAAA
CATCAAAAGTTCGCATTTTATCCCCTAACACCACGATGAAGAGCCAGCCT
ACAAGACGATCGATATTTTCCGAGTAAACATCAACATTCTACATTCTACA
TTCACCATCAATATTCAACATCAGCATGAATATTCAACACCAACACTAGC
CTTGAACATCAACATCAATATTACACATTAACATCAACACTGACCCCAAT
GCTGCCATTCTTTGTAACACCGTCAACGTTCGACGCCTTCAACACCAACG
CCTACACCACAATAATACATTCAACGCATGGCTTTCACTAACACCAAAAT
CGACACCATCAATGTTCCACATTCAGCGTCGCTAACACTAACTCCATCAA
TGGTCAACATCCAACATTCAACACCATTGCTAACACTAACACCATCAATA
TTCAACATCCAACATTCAACACCATTGCTAACACTGACACCATCAATATT
CAACATCCAACATTCAACACCATTACTAACACTAACACCATCAATACTCA
ACATTTAGCATTCAACACCATCACTAACGCTAACACTGACACCATCAATA
CTCAACAATCAACATTCAACGCCATCACTAACACCAATACTAACACCATG
AATATTCAAAATTCACCATGCAGCACTAACACCAATACTAACACCATCAA
TATTCAACTTTCAACATTTAACACAAACACTCATACTAACACCATCAATA
TTAACACAATTTCTTAACACCACTGTCAACACTTAACACAGATGGACTAC
CTGGTGGAAGACATGGGTCTGAGCGTGTACGACGTGCTCACCTTCCCAGC
CTACTTCTCGTACCCCTTGGACACGGTCATCGAACCGCGCACTGAATTCC
TCAAGATCAGGTAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12563:125..5988+

>mRNA_S-dermatodea_contig12563.1583.1 ID=mRNA_S-dermatodea_contig12563.1583.1|Name=mRNA_S-dermatodea_contig12563.1583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at S-dermatodea_contig12563:125..5988+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGGCGACCAGCATCGGGTCACTCATCCGACAAGCACCTTGGCTGGC
CCTTGAGCGGATTGACGGGCAGATGCTACCGGTGGCGAGGTTTTTGAGGA
GGGCGGGCGTGGTGGACTTGGAGAGGGTGGTGAGGTCGTACCCGAGGATA
CTTTGCTCGAGCATCAAGGGCGAGCTCGCTCCGAGGATGAAGGCGACCAG
CATCGGGTCACTCATCCGACAAGCACCTTGGCTGGCCCTTGAGCGGATTG
ACGGGCAGATGCTACCGGTGGCGAGGTTTTTGAGGAGGGCGGGCGTGGTG
GACTTGGAGAGGGTGGTGAGGTCGTACCCGAGGATACTTTGCTCGAGCAT
CAAGGGCGAGCTCGCTCCGAGGGTTCGGTTTTTGTGGGCGGACGTAGGCG
TGTCCGAGGAGGACCTGCCGCGGGTGCTGCAAACGTTCCCCCTGCTGTTC
GCACTGCCTCTGGCGCGCATGCAAGACGTGGTGGACTTCCTGTCGGTGGA
TCTGACCATCAATGACAAGGATATCGCCAAGATTATCAGGTTCGGTTTTT
GTGGGCGGACGTAGGCGTGTCCGAGGAGGACCTGCCGCGGGTGCTGCAAA
CGTTCCCCCTGCTGTTCGCACTGCCTCTGGCGCGCATGCAAGACGTGGTG
GACTTCCTGTCGGTGGATCTGACCATCAATGACAAGGATATCGCCAAGAT
TATCAGGGCGTTTCCGTCACTGCTCGGGCTAGAGAGGGAGCGGCACATGT
CTGGCGTGGTGCGATACCTGAAGAAACTAGGGGTGCAGAATGTTGGGCGG
TTCGTATCTCGACTACCGCCTGTCCTGGGTTATGACGTCAACACCAATCT
CGTACCCAAGGGCGTTTCCGTCACTGCTCGGGCTAGAGAGGGAGCGGCAC
ATGTCTGGCGTGGTGCGATACCTGAAGAAACTAGGGGTGCAGAATGTTGG
GCGGTTCGTATCTCGACTACCGCCTGTCCTGGGTTATGACGTCAACACCA
ATCTCGTACCCAAGATGGACTACCTGGTGGAAGACATGGGTCTGAGCGTG
TACGACGTGCTCACCTTCCCAGCCTACTTCTCGTACCCCTTGGACACGGT
CATCGAACCGCGCACTGAATTCCTCAAGATCAGGTAAATGGACTACCTGG
TGGAAGACATGGGTCTGAGCGTGTACGACGTGCTCACCTTCCCAGCCTAC
TTCTCGTACCCCTTGGACACGGTCATCGAACCGCGCACTGAATTCCTCAA
GATCAGGTAA
back to top