mRNA_S-dermatodea_contig12559.1579.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12559.1579.1 vs. uniprot
Match: A0A6H5L171_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L171_9PHAE) HSP 1 Score: 196 bits (498), Expect = 3.410e-55 Identity = 110/234 (47.01%), Postives = 133/234 (56.84%), Query Frame = 1
Query: 1 QGYLRFEGEFSAHECMNVAEDDARPGNGSGLWNGPEGKVIFKSNVAMEKCGTLVSYNAPYGNADGSYRSNYGGAIYNEGKVSFYEDAVFESNAADNGGA--INNAGTMKFLKRSKATFSENESLRSXXXXXXXXXLVMRNTAEFLDGVAGGSGGAIYVRQEGRMTFIKXXXXXXXXXXXXXXXISTSFDLVDDLPADATYTDNVILNADYDFQCDNVYVNGAL---EDDYTCLP 687
+GY+RFEG F+A C + + PGNG LWNGP+ KV+FK V M C Y + +G Y GGA+Y EGK+SFYEDAVF N D GGA I G +KFLKRSKATF+ N S LVMRNTA F DGV+G SGGAI M FIK I+T++ ++ LP DATY NV+ NADYD+ C +VYVNG+ ED Y CLP
Sbjct: 57 EGYVRFEGTFTADACRVGSTAEKYPGNGGALWNGPDAKVVFKEAVEMTNC-----YGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGGTGVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGSSGGAINAGDASEMVFIKHVNFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQNADYDYVCPDVYVNGSEDGGEDGYICLP 285
BLAST of mRNA_S-dermatodea_contig12559.1579.1 vs. uniprot
Match: D8LU56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU56_ECTSI) HSP 1 Score: 195 bits (495), Expect = 1.240e-53 Identity = 114/238 (47.90%), Postives = 135/238 (56.72%), Query Frame = 1
Query: 1 QGYLRFEGEFSAHECMNVAEDDAR--PGNGSGLWNGPEGKVIFKSNVAMEKCGTLVSYNAPYGNADGSYRSNY--GGAIYNEGKVSFYEDAVFESNAADNGGAI--NNAGTMKFLKRSKATFSENESLRSXXXXXXXXXLVMRNTAEFLDGVAGGSGGAIYVRQEGRMTFIKXXXXXXXXXXXXXXXISTSFDLVDDLPADATYTDNVILNADYDFQCDNVYVNGAL---EDDYTCLP 687
+G +RFEG FSA C V+ D A PG+G GLWNGP GK++FK V M+ CG S+RS GGAIY +GKVSFYEDA F N AD GGAI G +KFLK++K TF+ N S S LV+RNT F DG AGGSGGAIY M F+K I+TS+ +DDLP DATY N NAD DF+C+NVYVNG ED Y C+P
Sbjct: 150 EGLIRFEGTFSADGCKTVSSDTASVIPGDGGGLWNGPGGKIVFKEAVEMKNCGERTGLR--------SWRSQGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKKAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYQGNSRTNADSDFECNNVYVNGDAGGGEDGYICIP 379
BLAST of mRNA_S-dermatodea_contig12559.1579.1 vs. uniprot
Match: D7G627_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G627_ECTSI) HSP 1 Score: 192 bits (488), Expect = 1.740e-52 Identity = 109/234 (46.58%), Postives = 132/234 (56.41%), Query Frame = 1
Query: 1 QGYLRFEGEFSAHECMNVAEDDARPGNGSGLWNGPEGKVIFKSNVAMEKCGTLVSYNAPYGNADGSYRSNYGGAIYNEGKVSFYEDAVFESNAADNGGA--INNAGTMKFLKRSKATFSENESLRSXXXXXXXXXLVMRNTAEFLDGVAGGSGGAIYVRQEGRMTFIKXXXXXXXXXXXXXXXISTSFDLVDDLPADATYTDNVILNADYDFQCDNVYVNGAL---EDDYTCLP 687
+GY+RFEG F+A C + + PGNG LWNGP+ KV+FK V M C Y + +G Y GGA+Y EGK+SFYEDAVF N D GGA I +KFLKRSKATF+ N S LVMRNTA F DGV+G SGGAI M FIK I+T++ ++ LP DATY NV+ NADYD+ C +VYVNG+ ED Y CLP
Sbjct: 163 EGYVRFEGTFTADACRVGSTAEKYPGNGGALWNGPDAKVVFKEAVEMTNC-----YGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGVTAVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGSSGGAINAGDVSEMVFIKHVDFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQNADYDYVCPDVYVNGSEDGGEDGYICLP 391
BLAST of mRNA_S-dermatodea_contig12559.1579.1 vs. uniprot
Match: D7FSQ1_ECTSI (Adhesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ1_ECTSI) HSP 1 Score: 163 bits (413), Expect = 9.710e-42 Identity = 104/240 (43.33%), Postives = 137/240 (57.08%), Query Frame = 1
Query: 1 QGYLRFEGEFSAHECMNVAEDD----ARPGNGSGLWNGPEGKVIFKSNVAMEKCGTLVSYNAPYGNADGSYRSNYGGAIYNEGKVSFYEDAVFESNAADNGGA--INNAGTMKFLKRSKATFSENESLRSXXXXXXXXXLVMRNTAEFLDGVA-GGSGGAIYVRQEGRMTFIKXXXXXXXXXXXXXXXISTSFDLVDDLPADATYTDNVILN-ADYDFQCDNVYVNG---ALEDDYTCLP 687
QGY+RFEGEF A+ C V+ + A GNG+G+WNG + KV+FK V M+ CG N P+ ++G+ + GGAIY++G+VSF+EDA+F +N AD GGA I G +KFLK +KATF N + LVMRNTA F G + GSGG I M F+K I +D V+ LP DATYTDN I+N +D ++C++VYV G ED Y CLP
Sbjct: 155 QGYVRFEGEFYANGCETVSTIEEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCG-----NWPW-TSNGAEPGSDGGAIYSDGEVSFFEDALFTNNEADEGGALWIGVTGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKNVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVNNSDGFYKCEDVYVVGDGSGDEDAYMCLP 388 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12559.1579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12559.1579.1 >prot_S-dermatodea_contig12559.1579.1 ID=prot_S-dermatodea_contig12559.1579.1|Name=mRNA_S-dermatodea_contig12559.1579.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp MNVAEDDARPGNGSGLWNGPEGKVIFKSNVAMEKCGTLVSYNAPYGNADGback to top mRNA from alignment at S-dermatodea_contig12559:2823..6000+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12559.1579.1 ID=mRNA_S-dermatodea_contig12559.1579.1|Name=mRNA_S-dermatodea_contig12559.1579.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3178bp|location=Sequence derived from alignment at S-dermatodea_contig12559:2823..6000+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12559:2823..6000+ >mRNA_S-dermatodea_contig12559.1579.1 ID=mRNA_S-dermatodea_contig12559.1579.1|Name=mRNA_S-dermatodea_contig12559.1579.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at S-dermatodea_contig12559:2823..6000+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |