mRNA_S-dermatodea_contig12555.1574.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12555.1574.1
Unique NamemRNA_S-dermatodea_contig12555.1574.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12555.1574.1 vs. uniprot
Match: A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.510e-16
Identity = 143/390 (36.67%), Postives = 177/390 (45.38%), Query Frame = 1 
Query:  313 QQDHNRTPSFDQRASTESGGLGYVNSPFHRSPQLQQQQQTYELQQQQT------FG---QPSSHRSQTSAGATRS----PPSTYEHHGA--VEPPGFPGGIPGSPNTAAPRSGSIGN-----------------FQRER-SPGQPGDQRRF-SLSGPPQSXXXXXXXXXXXXXXXXXXXXXXXXXXXATVHSSXX---LXXXXXXXXXQLYG---RRSSSPGTSSRGGPGDPGYASGGSPVTPVLSHRAPPSTLPHAYSSGAGXXXXXXXXXXXDASSMFSSNVSGHSTYSGFSGLSAFNALGGSDLGSVGGRDVGAMGSGXXXXXXXXXXXTTNIVSAALPWRTPTPPTASSKADPTAVDEGSAMGTYAAAHGSTGGALGWGAVMGTGG 1362
            +Q H+R  SF+   ST+ G LGY+++PF  S Q                     +G     SSHR Q S+G+ RS    PP+ ++H      EPPGF G IPGSP+T+AP SG  G                  F+ +  SPGQ G      SLSG                       XXXXXXXX   HSS     L          +YG   RRSSSPG +S           GG                   +SS   XXXXXXXXX  D+S++F SNVSGHS+YSGFS +S+ +A GGS+LG+      G M  G             N+ +    WRTP  P  S K DP     G   G   A HGSTGGALGWG++MG+GG
Sbjct: 1390 RQGHHRRASFEHPPSTDEG-LGYLDNPFQPSRQXXXXXXXXXXXXXXXXXXXXXYGVALSASSHRRQGSSGSIRSSRSSPPTAFDHRNTNVSEPPGFSGVIPGSPSTSAPGSGGRGGSGALQWGSXXXXXXXXXFRADNVSPGQAGSXXXXXSLSG----------------------QXXXXXXXXQVSHSSQVSPPLQAMRQRHEQPVYGSCSRRSSSPGDAS---------VPGG-----------------RTFSSAXXXXXXXXXXXPDDSSTIFGSNVSGHSSYSGFSAMSSMHAFGGSELGNS---SSGGMAGGNAPADGSSSG--NNLAT----WRTP--PLGSQKGDP-----GDESGNPPA-HGSTGGALGWGSIMGSGG 1713
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BLAST of mRNA_S-dermatodea_contig12555.1574.1 vs. uniprot
Match: D7FXG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG3_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.230e-9
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = 1 
Query: 1018 ASSMFSSNVSGHSTYSGFSGLSAFNALGGSDLG-SVGGRDVGAMGSGXXXXXXXXXXXTTNIVSAALPWRTPTPPTASSKADPTAVDEGSAMGTYAAAHGSTGGALGWGAVMGTGG 1362
            +S++F SNVSGHS+YSGFS +S+ +A GGS+LG S GG  +  + +    XXXX     T        WRTP  P  S K DP     G   G   A HGSTGGALGWG++MG+GG
Sbjct:   56 SSTIFGSNVSGHSSYSGFSAMSSMHAFGGSELGNSSGGGGMAGVNAAADGXXXXNNNPAT--------WRTP--PLGSQKGDP-----GDESGNPPA-HGSTGGALGWGSIMGSGG 155
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12555.1574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3L2_9PHAE5.510e-1636.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXG3_ECTSI1.230e-948.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12555contigS-dermatodea_contig12555:158..2811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003120.1
Exons3
Model size1362
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12555.1574.1prot_S-dermatodea_contig12555.1574.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12555 158..493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924252.389801-CDS-S-dermatodea_contig12555:157..4931622924252.389801-CDS-S-dermatodea_contig12555:157..493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12555 158..493 -
1694079126.5469499-CDS-S-dermatodea_contig12555:157..4931694079126.5469499-CDS-S-dermatodea_contig12555:157..493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12555 158..493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924252.3998258-UTR-S-dermatodea_contig12555:493..8741622924252.3998258-UTR-S-dermatodea_contig12555:493..874Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12555 494..874 -
1694079126.5571616-UTR-S-dermatodea_contig12555:493..8741694079126.5571616-UTR-S-dermatodea_contig12555:493..874Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12555 494..874 -
1622924252.4090207-UTR-S-dermatodea_contig12555:1373..15771622924252.4090207-UTR-S-dermatodea_contig12555:1373..1577Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12555 1374..1577 -
1694079126.5671966-UTR-S-dermatodea_contig12555:1373..15771694079126.5671966-UTR-S-dermatodea_contig12555:1373..1577Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12555 1374..1577 -
1622924252.420897-UTR-S-dermatodea_contig12555:2370..28111622924252.420897-UTR-S-dermatodea_contig12555:2370..2811Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12555 2371..2811 -
1694079126.577837-UTR-S-dermatodea_contig12555:2370..28111694079126.577837-UTR-S-dermatodea_contig12555:2370..2811Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12555 2371..2811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12555.1574.1

>prot_S-dermatodea_contig12555.1574.1 ID=prot_S-dermatodea_contig12555.1574.1|Name=mRNA_S-dermatodea_contig12555.1574.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MFSSNVSGHSTYSGFSGLSAFNALGGSDLGSVGGRDVGAMGSGSGGGGHG
SGSGTTNIVSAALPWRTPTPPTASSKADPTAVDEGSAMGTYAAAHGSTGG
ALGWGAVMGTGG
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mRNA from alignment at S-dermatodea_contig12555:158..2811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12555.1574.1 ID=mRNA_S-dermatodea_contig12555.1574.1|Name=mRNA_S-dermatodea_contig12555.1574.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2654bp|location=Sequence derived from alignment at S-dermatodea_contig12555:158..2811- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGTACACAGACGGGCGAGATGGCTACCACTAGTTCGCCACTACACCAA
CGCGCTTCAGTAGTTCGCCAATTACGAGCGCGACTTTTTATTTACCTATC
GTATCACCCAGTCGGGCAGGATACGATTTGCAGGCCTAGCCAGATCCCGG
GCTTGATTGTTCTTCGCCACCTATCCTCCAACCCCCCGCCCCCACCCCAC
ATCGTCATCCTGGTACCGCGAGTTAAAATATCATTTCCCCCGTCCGTCCG
TCCGTCCGTCCGTCCGCTCCCCCCCCCTCAACCCCGCCCCCCTTAGCGGA
GGAGACAGTGCGCAACAAGATCACAATCGAACGCCATCGTTCGACCAGCG
CGCCTCGACCGAGAGCGGCGGCCTGGGGTATGTGAACAGCCCTTTCCACC
GGTCTCCCCAGCTTCAGCAACAGCAACAGACCTACGAATTGGTGAGAGCG
GGATCGCGCACACACGCCCAAATCCGCCGGCTTGTCTGTCTTGTCTGTCC
ATGAACGTTGTCATTCTATTGTTGTTTTGCACGTTTTTGTGTTACCCGCC
GCGTACGGAATGCGGGCAGTTTAGAAAGAGAAAGGGCGGGGGTAGTTCTG
ATACGGCTGTTGTTTAGGAAAAACACGTGTCCTTTGTGTACACCACAAGG
TGTGTATTTTTGTACGTGTGTCATACACACTACAGTACTAACCTCGTAAA
AAATAAAAATGCAACTGCAAAATTTTGTTCGGCGTGCCTCTGCCCGTTTC
CTTGGAGGAGCAGCAAGCGAGCGAGCGTATTTCCAAACAGGACCGAGCTC
GATCGAAAGCTAAAGCGCCAAGATCCAGGCGTGGAGTGGCAAACCACTCC
TTGAAACCAATGATCACGCCCGCAGACACGCCCCCGTGCGCGATAGATGT
TGCCGCCGGCGCCTCAACTGCCCCGTAAAGCTCGAGCGACCGTTTCTCTT
CTCTGGCGGAACTTCATGTGAATACCAGTCAATGCATCAAGACCGCGGAT
ACAGTACTTATTTGTGCAAGTATCGCAGCGCCGCACGGCCACGTCTGACC
TCTTGCGCCAACAGGATGTTTCCGAATTCTCGATATATCGTCTGACCACT
ATTAAATATTACACTATTCTAAGCTGGATCGGTAACCATTGGCGGGCCGG
TCGGTTGTAATTAATAGTGCAATAATCAATCAACCAATCAATCAATCCCC
GCCCGTCGTATCGCACGTCCTTCCAAATCAACAGCAGCAGCAGCAGACCT
TCGGCCAGCCCTCGTCACACCGAAGTCAAACCTCCGCCGGCGCCACCCGC
TCTCCGCCGTCCACGTACGAGCACCACGGCGCCGTGGAGCCACCCGGCTT
TCCGGGAGGGATCCCTGGCTCGCCAAACACGGCAGCGCCCCGCAGCGGCA
GCATTGGAAATTTCCAGCGGGAGAGGTCTCCGGGCCAGGTACGTAGGGAC
TGCTTGCATGCGAAACTAGGCGCGCGGAATGGTAGTGTTGGTCTTCCGGG
GATTGTTTTTTTTTTCGAATCAACCAGGATTGCTTGATCCCTCGGCACGG
TGCATGGAAATTGACAGGGGGAGAGCTCGCCAGGAGTTTTTTGTTGCGCT
TTTTACCATCATATCTCTAGTTAGCGCCCTATCATATCCCACGCTACACC
GCCGCTGTCTCCAGCGGGCCTGTAGCAATACTGGGAGACAACAAGTGGCC
CGAAAATGCGAGAATTGAAGTCAGGTAGAAATGGTAGAGAAAAGTATTGA
GCCAACTGTGTACACAAGTATATCGGACAAATTAATGGTAATCGGCGATC
GATCCTGTGGGGACAATGCTCCCATCCGTCCTCCCGAGGACGCGTGGTGA
ATGGCCTAACAGCTTAGGCATGCAAAACGTGAGTACCCCCCTCCCCCCAT
GCGTCTCACCCCGTGCTCCCCTGTAACACCCCCCCAGCCTGGAGACCAAC
GGCGCTTCTCTCTATCCGGACCGCCACAATCCAGCGGCGGCGCCCCCCGG
CGCCCGCAATACCCACCGCCTGCCTACCAGCAGCAGCAGCAACAACAACA
ACAACAACAGAAAGCAACCGTCCACTCGTCCCCCCCGCTGCAGCCGCAGC
GGCAGCGGCACGAGCAGCAGCTCTACGGCCGGCGGTCGTCCTCCCCCGGC
ACGTCTTCGAGGGGAGGTCCCGGGGACCCCGGGTACGCCAGCGGAGGCAG
CCCCGTCACCCCGGTGCTGTCGCACCGAGCGCCCCCGTCCACCTTGCCCC
ACGCGTACTCTTCTGGCGCGGGGGGCGGGTCGTCTTCCGTTGCCAACAAC
CACGACGACGCGTCCTCCATGTTCAGCTCGAACGTGTCGGGGCACTCCAC
GTACTCGGGATTCTCGGGCCTCTCGGCGTTCAACGCGCTCGGCGGGAGCG
ACCTCGGGAGCGTGGGGGGCCGCGACGTTGGTGCCATGGGAAGCGGGAGT
GGAGGCGGGGGCCACGGTAGCGGCAGCGGGACGACGAACATCGTCTCCGC
GGCGCTGCCATGGCGAACTCCAACGCCGCCGACGGCCTCCTCCAAGGCCG
ACCCCACGGCGGTCGACGAGGGGTCGGCCATGGGGACGTACGCCGCTGCG
CACGGGTCTACCGGGGGAGCTTTGGGATGGGGTGCCGTGATGGGCACCGG
CGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12555:158..2811-

>mRNA_S-dermatodea_contig12555.1574.1 ID=mRNA_S-dermatodea_contig12555.1574.1|Name=mRNA_S-dermatodea_contig12555.1574.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig12555:158..2811- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCAGCTCGAACGTGTCGGGGCACTCCACGTACTCGGGATTCTCGGG
CCTCTCGGCGTTCAACGCGCTCGGCGGGAGCGACCTCGGGAGCGTGGGGG
GCCGCGACGTTGGTGCCATGGGAAGCGGGAGTGGAGGCGGGGGCCACGGT
AGCGGCAGCGGGACGACGAACATCGTCTCCGCGGCGCTGCCATGGCGAAC
TCCAACGCCGCCGACGGCCTCCTCCAAGGCCGACCCCACGGCGGTCGACG
AGGGGTCGGCCATGGGGACGTACGCCGCTGCGCACGGGTCTACCGGGGGA
GCTTTGGGATGGGGTGCCGTGATGGGCACCGGCGGGATGTTCAGCTCGAA
CGTGTCGGGGCACTCCACGTACTCGGGATTCTCGGGCCTCTCGGCGTTCA
ACGCGCTCGGCGGGAGCGACCTCGGGAGCGTGGGGGGCCGCGACGTTGGT
GCCATGGGAAGCGGGAGTGGAGGCGGGGGCCACGGTAGCGGCAGCGGGAC
GACGAACATCGTCTCCGCGGCGCTGCCATGGCGAACTCCAACGCCGCCGA
CGGCCTCCTCCAAGGCCGACCCCACGGCGGTCGACGAGGGGTCGGCCATG
GGGACGTACGCCGCTGCGCACGGGTCTACCGGGGGAGCTTTGGGATGGGG
TGCCGTGATGGGCACCGGCGGG
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