mRNA_S-dermatodea_contig12463.1527.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12463.1527.1
Unique NamemRNA_S-dermatodea_contig12463.1527.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 8.140e-38
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDYRR 279
            QGDLMLTL+EVLGPELDKKAT IYRHN+ GIVEGVIKTSAI+Q+EAEDVAR+GVKI  G E+D GW +FSL Y+V +P+S VVT + L++YRR
Sbjct:  569 QGDLMLTLIEVLGPELDKKATVIYRHNVMGIVEGVIKTSAILQDEAEDVARIGVKIFGGSESDTGWDVFSLEYDVGAPISTVVTKEVLVEYRR 661
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 5.000e-29
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVA-RVGVKILSGLE----------TDKGWQIFSLTYEVESPVSAVVTSQALMDYRR 279
            QGDLMLTL+EVLGPELDKKAT I RHN+ GIVEGVIKTSAI+Q+EA DVA R+GVKI +G +          + +GW +FSL Y+V +PVS VVT + L++Y R
Sbjct: 1400 QGDLMLTLIEVLGPELDKKATVICRHNVMGIVEGVIKTSAILQDEAGDVAIRIGVKISTGYDFVRVAMPASPSLRGWDVFSLKYDVGAPVSTVVTEEVLVEYPR 1503
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: D7G6W3_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 9.360e-28
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGVKILSGLETDKG 195
            QGDLMLTL+EVLGPELDKKAT IYRHN+ GIVEG IKTSAI+Q+EAEDVAR+GVKI  G E+D G
Sbjct:   66 QGDLMLTLIEVLGPELDKKATVIYRHNVMGIVEGAIKTSAILQDEAEDVARIGVKIFGGSESDTG 130
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: A0A7S1XYE1_9STRA (Spindle pole body component n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYE1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.760e-19
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVA-RVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDYRR 279
            QGD + TL+  LGPEL K+A+ +YRHNLTG V+  +++S   +  + DV  RVGV++L G   D GW  F+L Y V  P+  V+   A + YRR
Sbjct:   57 QGDFVETLINTLGPELSKRASQVYRHNLTGAVDSAVRSSNAARVYSNDVLERVGVRLLEGSPGDTGWDTFTLDYYVSQPLDGVINPAAQLSYRR 150
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: A0A367KS80_RHIST (Spindle pole body component n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KS80_RHIST)

HSP 1 Score: 87.4 bits (215), Expect = 4.250e-18
Identity = 37/91 (40.66%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDY 273
            QGD +  L++VLGP+LDK A+ ++RH+LTGI+E  I++S    ++ E ++R+ V++L   + D GW +FSL Y V++P++ V+   A++ Y
Sbjct:  452 QGDYIEYLMDVLGPQLDKPASTLFRHHLTGILETAIRSSNAQYDDPEILSRLNVRLLEAQKNDSGWDVFSLDYHVDTPINTVINPNAMIQY 542
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: A0A7R9UD18_9STRA (Spindle pole body component n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD18_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.760e-18
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVA-RVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDYRR 279
            QGD +  L+  +GPEL K+A+ +YRHNLTG V+G ++ S      + DV  RVGV++L     D GW++F+L Y V  P+  V+   A + YRR
Sbjct:   43 QGDFVEPLINAIGPELSKRASQVYRHNLTGAVDGAVRGSNAAFIYSSDVLERVGVRLLEASPGDSGWEVFTLDYYVSKPLDGVINPMAQLSYRR 136
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: K3WEA1_GLOUD (Spindle pole body component n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEA1_GLOUD)

HSP 1 Score: 85.5 bits (210), Expect = 2.040e-17
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDYRR 279
            QGD +  L+++LGPEL K+AT IYRH LT ++E  + +S    E  + +AR+ V++L     D GW IFSL Y++ SPV+ V+   A+  Y+R
Sbjct:  668 QGDFIQYLMDLLGPELSKRATQIYRHTLTNVLETALNSSNAKFETTDILARLDVELLQASTGDSGWDIFSLHYKLTSPVNTVINDAAMAQYQR 760
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: B3RTZ1_TRIAD (Gamma-tubulin complex component (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RTZ1_TRIAD)

HSP 1 Score: 84.0 bits (206), Expect = 6.960e-17
Identity = 36/93 (38.71%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDYRR 279
            QGD ++ L++ L P+L+K A+++Y HNLTG++E  I+ +    ++A+ + R+ +++L     D GW IFSL Y V+ P+S V T+Q +++Y R
Sbjct:  330 QGDFVIHLMDSLAPDLNKPASNLYVHNLTGVLETAIRATNAQYDDADIIKRLDIRLLEVSPGDTGWDIFSLDYHVDGPISTVFTAQCMINYLR 422
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: G4YTK8_PHYSP (Spindle pole body component n=6 Tax=Phytophthora TaxID=4783 RepID=G4YTK8_PHYSP)

HSP 1 Score: 84.0 bits (206), Expect = 7.080e-17
Identity = 35/93 (37.63%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDYRR 279
            QGD +  L+++LGPEL K+ + +YRH LT ++E  +  S    E A+ + R+ V++L G   D GW IFSL Y +++PV++V+ + +++ Y++
Sbjct:  592 QGDFIQYLMDLLGPELSKRGSQVYRHTLTNVLETALNASNAKFESADILGRLDVELLQGSSADTGWDIFSLHYNLQAPVNSVIPASSMLQYQQ 684
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BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Match: I1BVC3_RHIO9 (Spindle pole body component n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BVC3_RHIO9)

HSP 1 Score: 83.2 bits (204), Expect = 1.140e-16
Identity = 37/89 (41.57%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 QGDLMLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGVKILSGLETDKGWQIFSLTYEVESPVSAVVTSQALM 267
            QGD +  L++VLG +LDK AT ++RHNLTG++E  I++S    +E E + R+ V++L   + D GW +F+L Y V++P++ V+   A+M
Sbjct:  357 QGDFIQYLMDVLGVKLDKPATTLFRHNLTGVLETTIRSSNAQYDEPEILNRLDVRLLEIQKNDSGWDVFTLDYHVDAPINTVINPNAMM 445
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12463.1527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W1_ECTSI8.140e-3873.12Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
D7G720_ECTSI5.000e-2961.54NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G6W3_ECTSI9.360e-2880.00Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
A0A7S1XYE1_9STRA6.760e-1944.68Spindle pole body component n=2 Tax=Phaeomonas par... [more]
A0A367KS80_RHIST4.250e-1840.66Spindle pole body component n=1 Tax=Rhizopus stolo... [more]
A0A7R9UD18_9STRA8.760e-1842.55Spindle pole body component n=1 Tax=Pinguiococcus ... [more]
K3WEA1_GLOUD2.040e-1743.01Spindle pole body component n=1 Tax=Globisporangiu... [more]
B3RTZ1_TRIAD6.960e-1738.71Gamma-tubulin complex component (Fragment) n=1 Tax... [more]
G4YTK8_PHYSP7.080e-1737.63Spindle pole body component n=6 Tax=Phytophthora T... [more]
I1BVC3_RHIO91.140e-1641.57Spindle pole body component n=1 Tax=Rhizopus delem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12463contigS-dermatodea_contig12463:103..1135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.5e-29
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
KEGG koko:K16570
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
Ec32 ortholog descriptionGamma-tubulin complex component protein
Ec32 orthologEc-01_012010.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size280
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12463.1527.1prot_S-dermatodea_contig12463.1527.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12463 115..1135 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.549342-UTR-S-dermatodea_contig12463:102..1141622924248.549342-UTR-S-dermatodea_contig12463:102..114Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12463 103..114 +
1694079123.6035244-UTR-S-dermatodea_contig12463:102..1141694079123.6035244-UTR-S-dermatodea_contig12463:102..114Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12463 103..114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.5588362-CDS-S-dermatodea_contig12463:114..2931622924248.5588362-CDS-S-dermatodea_contig12463:114..293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12463 115..293 +
1694079123.615304-CDS-S-dermatodea_contig12463:114..2931694079123.615304-CDS-S-dermatodea_contig12463:114..293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12463 115..293 +
1622924248.568878-CDS-S-dermatodea_contig12463:653..7201622924248.568878-CDS-S-dermatodea_contig12463:653..720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12463 654..720 +
1694079123.6241543-CDS-S-dermatodea_contig12463:653..7201694079123.6241543-CDS-S-dermatodea_contig12463:653..720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12463 654..720 +
1622924248.5771463-CDS-S-dermatodea_contig12463:1114..11351622924248.5771463-CDS-S-dermatodea_contig12463:1114..1135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12463 1115..1135 +
1694079123.6335585-CDS-S-dermatodea_contig12463:1114..11351694079123.6335585-CDS-S-dermatodea_contig12463:1114..1135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12463 1115..1135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12463.1527.1

>prot_S-dermatodea_contig12463.1527.1 ID=prot_S-dermatodea_contig12463.1527.1|Name=mRNA_S-dermatodea_contig12463.1527.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MLTLVEVLGPELDKKATHIYRHNLTGIVEGVIKTSAIVQEEAEDVARVGV
KILSGLETDKGWQIFSLTYEVESPVSAVVTSQALMDYRR
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mRNA from alignment at S-dermatodea_contig12463:103..1135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12463.1527.1 ID=mRNA_S-dermatodea_contig12463.1527.1|Name=mRNA_S-dermatodea_contig12463.1527.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1033bp|location=Sequence derived from alignment at S-dermatodea_contig12463:103..1135+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGGGACCTCATGCTGACTCTAGTTGAGGTGCTTGGGCCTGAGCTGGA
CAAGAAGGCTACGCACATCTACCGGCACAACCTCACGGGCATAGTGGAGG
GCGTGATCAAGACGAGCGCCATCGTCCAAGAAGAAGCCGAAGACGTGGCC
AGGGTCGGGGTGAAGATACTCTCTGGCCTGGAGACTGACAAGTGGGTCGT
GCCACAAACGCGCTTGCAGTCAACATCCTAGATCATCGACCCATTCGCTG
TATGTCCTATTACATTAGCACCGTGGGGGGGCACGGCATGCTTATGAATG
TATACCGTCAGGGCGAAACCTTTAGTTTTGAGTGGCCGTCCATCAATGAC
ATGTTGTGCGGCATCAGCGCAAATTACCGTTGGCCATACTGCAAACTGCC
GCGTTGGCAGACCTATGGAGCGCAGGCGTAGACCGAGATTGAACACGAGA
TATCATGCTGTGCGTTGCAACGGTGCCGCAAACCGCCCCTCTCAATCGCG
TCGTTACTCACTCCTACCCTGGCGTTACGTCTGCGCTGTTCACCTGTGCA
GAGGGTGGCAAATTTTCTCCCTCACGTACGAGGTGGAATCTCCGGTTTCA
GCAGTCGTCACCTCACAGGTACTACCTTTTAACCATACGATGTACCTCGA
ATTGGCACGTTTCAGGTGTACAGCCCAATACCACTCTCGGCAGCTTTACC
ATCTCGCCTCGATTCTCGCACAGAGAGGTACAAGAAGGCACTCACATTGT
GACTACGGCTGTTTTAGAAGACTGACATTTTGATGAGAGTTCTGCCCTAC
GTTGTGTCTTAGTGCAAAGGATGTGTGTCTCGGTGACTTGTATCCTTTCG
GCCTTCAATGCCGCTTTGCTTGAAGGCCTCCATGGCTGTGTCGCATGCGT
GTTGTTTCAGTCAAGCACCTTAGAGATGGTTGTCGCTGCTTACGGTCTCA
CTTGAGGAAGACGCCCCCTGGCGGGCTTCTTTGTCGCGCACCGTCTCACT
CGACCATGTCAGGCGCTAATGGATTACCGCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12463:103..1135+

>mRNA_S-dermatodea_contig12463.1527.1 ID=mRNA_S-dermatodea_contig12463.1527.1|Name=mRNA_S-dermatodea_contig12463.1527.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig12463:103..1135+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGACTCTAGTTGAGGTGCTTGGGCCTGAGCTGGACAAGAAGGCTAC
GCACATCTACCGGCACAACCTCACGGGCATAGTGGAGGGCGTGATCAAGA
CGAGCGCCATCGTCCAAGAAGAAGCCGAAGACGTGGCCAGGGTCGGGGTG
AAGATACTCTCTGGCCTGGAGACTGACAAATGCTGACTCTAGTTGAGGTG
CTTGGGCCTGAGCTGGACAAGAAGGCTACGCACATCTACCGGCACAACCT
CACGGGCATAGTGGAGGGCGTGATCAAGACGAGCGCCATCGTCCAAGAAG
AAGCCGAAGACGTGGCCAGGGTCGGGGTGAAGATACTCTCTGGCCTGGAG
ACTGACAAAGGGTGGCAAATTTTCTCCCTCACGTACGAGGTGGAATCTCC
GGTTTCAGCAGTCGTCACCTCACAGAGGGTGGCAAATTTTCTCCCTCACG
TACGAGGTGGAATCTCCGGTTTCAGCAGTCGTCACCTCACAGGCGCTAAT
GGATTACCGCAGGGCGCTAATGGATTACCGCAGG
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