mRNA_S-dermatodea_contig12453.1525.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12453.1525.1
Unique NamemRNA_S-dermatodea_contig12453.1525.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12453.1525.1 vs. uniprot
Match: D7FPK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK9_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 7.220e-38
Identity = 116/197 (58.88%), Postives = 127/197 (64.47%), Query Frame = 1 
Query:   31 AQPP-ILSRARVNEMRAYQVKEKSALHLLFGLPARAIRYSLGFQMFGFREKASRQXXXXXXXXXXXXXXXXXXXX--------------------------------------RADPSAATASGEAAAKSAPRGRVRLSGFGQVGMGGSVALCDPASGLAFAMVTNKVETGRKSSSTVLSLVCEELGIGDPSNFFED 504
            A+PP +L RARVNEMRAYQVKE S+LHL FGLP   +RYSLG+QMFGFREK   Q      XXXXXXXXXXXXXX                                       +D      + +AAA  A RGRVRLSG G VGMGGSVALCDPASGLAFAMVTNKV TGR+ S+ VLSLVCEELGIGDPS+FFED
Sbjct:  950 AKPPSLLCRARVNEMRAYQVKESSSLHLFFGLPMGGVRYSLGYQMFGFREKPKLQQLQRRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXESDDGTVPLT-DAAAAPATRGRVRLSGLGHVGMGGSVALCDPASGLAFAMVTNKVATGRECSTAVLSLVCEELGIGDPSHFFED 1145
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BLAST of mRNA_S-dermatodea_contig12453.1525.1 vs. uniprot
Match: A0A6H5KBB7_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB7_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 9.230e-38
Identity = 103/196 (52.55%), Postives = 112/196 (57.14%), Query Frame = 1 
Query:   37 PPILSRARVNEMRAYQVKEKSALHLLFGLPARAIRYSLGFQMFGFREKASRQXXXXXXXXXXXXXXXXXXXX--------------------------------------RADPSAA--TASGEAAAKSAPRGRVRLSGFGQVGMGGSVALCDPASGLAFAMVTNKVETGRKSSSTVLSLVCEELGIGDPSNFFED 504
            PP+L RARVNEMRAYQVKE S+LHL FGLP   +RYSLG+QMFGFREK   Q                 XXX                                       +D      T +       APRGRVRLSG G VGMGGSVALCDPASGLAFAMVTNKV TGR+ S+ VLSLVCEELGIGDPS+FFED
Sbjct: 1382 PPLLCRARVNEMRAYQVKESSSLHLFFGLPMGGVRYSLGYQMFGFREKPKPQQLQRRHEPASGASSRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDGTVPMTDAAXXXXXPAPRGRVRLSGLGHVGMGGSVALCDPASGLAFAMVTNKVATGRECSTAVLSLVCEELGIGDPSHFFED 1577
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BLAST of mRNA_S-dermatodea_contig12453.1525.1 vs. uniprot
Match: A0A835ZC02_9STRA (Beta-lactamase/transpeptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC02_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.050e-15
Identity = 56/152 (36.84%), Postives = 77/152 (50.66%), Query Frame = 1 
Query:   43 ILSRARVNEMRAYQVKEKSALHLLFGLPARAIRYSLGFQMFGFREKASRQXXXXXXXXXXXXXXXXXXXXRADPSAATASGEAAAKSAPRGRVRLSGFGQVGMGGSVALCDPASGLAFAMVTNKVETGRKSSSTVLSLVCEELGIGDPSNFF 498
            +LSR RV E R+Y   + SA+H LFGL  R +RY LG Q+FGF+E+                                    A     P  R        VG+GGS ALCDPA+G++FAM  N++  GR++++ V  LVC+ELG+G+P   F
Sbjct:  850 LLSRERVEEFRSYAASDSSAMHRLFGLRNR-MRYGLGCQLFGFKEEGPEGARRTRLSGFGTTSRSRTHSLXXXXXXXHTHSAAPLSHTPCAR-------HVGVGGSAALCDPATGVSFAMTVNRIRPGRRATTQVFELVCKELGMGEPVPLF 993
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BLAST of mRNA_S-dermatodea_contig12453.1525.1 vs. uniprot
Match: A0A6V1QAP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QAP5_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 6.100e-14
Identity = 48/161 (29.81%), Postives = 70/161 (43.48%), Query Frame = 1 
Query:   16 GGAGRAQPPILSRARVNEMRAYQVKEKSALHLLFGLPARAIRYSLGFQMFGFREKASRQXXXXXXXXXXXXXXXXXXXXRADPSAATASGEAAAKSAPRGRVRLSGFGQVGMGGSVALCDPASGLAFAMVTNKVETGRKSSSTVLSLVCEELGIGDPSNFF 498
            GG G   P +L R  + + R    +++++   LFG  A  +RY LG+Q+ GFR+    +                                        G VR +  G  G  GS+A CDP +GL FAM  NK+  G + +  +L LVC+ELG G P + F
Sbjct:    1 GGGGGRPPVLLRRETLAQARKVHCRDRASYLQLFG-QAEGVRYGLGYQIMGFRDDVPDEDGGKR----------------------------------EGHVRFTAMGHTGASGSIAFCDPVTGLVFAMTVNKIVEGHQGTKAILELVCKELGCGTPVSVF 126
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12453.1525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FPK9_ECTSI7.220e-3858.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBB7_9PHAE9.230e-3852.55FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZC02_9STRA2.050e-1536.84Beta-lactamase/transpeptidase-like protein n=1 Tax... [more]
A0A6V1QAP5_HETAK6.100e-1429.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12453contigS-dermatodea_contig12453:1638..4956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D7FPK9
KEGG koko:K08869,ko:K10779
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
Ec32 ortholog descriptionBeta-lactamase-related
Ec32 orthologEc-12_000970.2
EC3.6.4.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size2204
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12453.1525.1prot_S-dermatodea_contig12453.1525.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12453 3335..4887 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.4227068-UTR-S-dermatodea_contig12453:1637..33341622924248.4227068-UTR-S-dermatodea_contig12453:1637..3334Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12453 1638..3334 -
1694079123.5173793-UTR-S-dermatodea_contig12453:1637..33341694079123.5173793-UTR-S-dermatodea_contig12453:1637..3334Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12453 1638..3334 -
1622924248.4700794-UTR-S-dermatodea_contig12453:4887..49561622924248.4700794-UTR-S-dermatodea_contig12453:4887..4956Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12453 4888..4956 -
1694079123.5575027-UTR-S-dermatodea_contig12453:4887..49561694079123.5575027-UTR-S-dermatodea_contig12453:4887..4956Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12453 4888..4956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.433365-CDS-S-dermatodea_contig12453:3334..34271622924248.433365-CDS-S-dermatodea_contig12453:3334..3427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12453 3335..3427 -
1694079123.5297608-CDS-S-dermatodea_contig12453:3334..34271694079123.5297608-CDS-S-dermatodea_contig12453:3334..3427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12453 3335..3427 -
1622924248.44723-CDS-S-dermatodea_contig12453:3945..42751622924248.44723-CDS-S-dermatodea_contig12453:3945..4275Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12453 3946..4275 -
1694079123.5389605-CDS-S-dermatodea_contig12453:3945..42751694079123.5389605-CDS-S-dermatodea_contig12453:3945..4275Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12453 3946..4275 -
1622924248.4608119-CDS-S-dermatodea_contig12453:4872..48871622924248.4608119-CDS-S-dermatodea_contig12453:4872..4887Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12453 4873..4887 -
1694079123.5483587-CDS-S-dermatodea_contig12453:4872..48871694079123.5483587-CDS-S-dermatodea_contig12453:4872..4887Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12453 4873..4887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12453.1525.1

>prot_S-dermatodea_contig12453.1525.1 ID=prot_S-dermatodea_contig12453.1525.1|Name=mRNA_S-dermatodea_contig12453.1525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=146bp
MRAYQVKEKSALHLLFGLPARAIRYSLGFQMFGFREKASRQQQQQQTWSS
NTSSAISASSSRADPSAATASGEAAAKSAPRGRVRLSGFGQVGMGGSVAL
CDPASGLAFAMVTNKVETGRKSSSTVLSLVCEELGIGDPSNFFED*
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mRNA from alignment at S-dermatodea_contig12453:1638..4956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12453.1525.1 ID=mRNA_S-dermatodea_contig12453.1525.1|Name=mRNA_S-dermatodea_contig12453.1525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3319bp|location=Sequence derived from alignment at S-dermatodea_contig12453:1638..4956- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGATGGAGGCCGGGGTGGCGCCGGGCGCGCACAGCCCCCCATCCTAAG
CCGCGCGAGGGTGAACGAGATGCGAGCTTACCAGGTGAAATGATGGTGTT
TGTGGGTGGTACACGGAGATAGTAAGGTGGATGCGCGACCTCGAAGCTAT
CCGAGCAGAAACCCTCAATCCTACTTGTATTTTCCAGGACCCCCCCCCCC
CCCTTCGTTCCCGCAGTATTTCATCAGAAAAAATGCTTAACCATGCCCCG
GCATGTCTTACCGCACAAGGATCGTCCCGCATGTTTCGTGTGTGAGGGTC
TTCAACACACCGCGAATACCAAGCTCACGTCGCCTCGCTCGACGGTTTTA
GAGTGGATCCACCTCTCCTCTCTTCACGCATGATCTCAACGTCCTCCGTG
GCAATTTTTTCGTGCATCGCAGGAAGGCCGTAGACACCTCGATTCACGGG
CGTGTGCATACTCCCACCCACGTGGGGAGAGCTCACCAACCCAGGCATAC
GCTACATGGAAGGCCACGGCAATCCTCGTTTCGCACTCTATGAACCTGGC
TCGACTTTTTTCTTCCAGCATAACTATCGCTGTTAATTTTTTTGCTGCTC
TGCTGCAAGCGATGTCAGCCCTGCGTCGCCATTCCCCGCCCACCACTGGC
CATCGTCTGATGCATTCTGTATTATCAATAGGTGAAGGAGAAGAGCGCTC
TTCACCTCCTCTTCGGCCTTCCTGCGCGAGCAATCCGATATTCCCTTGGC
TTCCAGATGTTCGGCTTCCGGGAGAAGGCTTCACGGCAGCAGCAGCAGCA
GCAGACGTGGTCTTCGAACACCAGCAGCGCGATAAGCGCAAGCAGCTCAA
GGGCCGATCCGTCGGCTGCCACCGCCAGTGGCGAAGCTGCTGCTAAATCC
GCACCCCGTGGCCGCGTGCGTCTATCCGGGTTCGGTCAAGTGGGAATGGG
TGGGAGCGTAGCCCTGTGCGACCCCGCGTCTGGCCTGGCGTTTGCGATGG
TCACCAACAAGGTGAGCACCTGCCGCCGAGTTTCGGGAAGGATGTGGCGG
ATATTTTGAACCAAAGGCCTGCCGGCTCCTCTGTTGTACGTCTCCACCGC
GTCTCTAGGTGCCCGAACGCCGAAAGCGCAAGTGCTATTATTTATTTTCT
TATCTCTCTGCTCAGCCGTTTTTTCACCCTTGCCAGTTGTTGCTGCACCA
GGCGATATGGAAGAAATACGTGTACATGTACCGCCGCGTTAGACAAGCCC
TCCTGACTTATATACGTCGGCATACACAACCTACGAGTGGTAGCGGGTGA
TTGTGGCTTGCTGCTCATGTTCAGGTTCGATGTGCAGGGATAATTGCATT
ACCGCATGATTGGGGCGTTTGCTTGATGGTTCAGGTTGCGCTGACCATCC
TTAAACCACCTGGTGCGTGTCCCGATCGCGGCCTCTATCGGTTACAAACC
CTGTCCTTTGTTTCAAAGCACGTGTTCGTTGTTCCTTCCCCCTTGCGCCT
CGGTGCACACATCTCGCTCGATTTTACAGGTTGAGACCGGCCGCAAGTCT
TCGTCAACCGTGCTGAGCCTCGTGTGCGAGGAGCTGGGAATTGGTGACCC
ATCTAATTTTTTTGAAGACTAACGCGTGTGCCTCATTTATGCAGAGGGTA
TGTGATGGTGTGTGTCACATGCTCTTTGTCGTGGCGCCGCTGTTCTCTGC
CGAGGCCGATAAGGATCGGCAGAGTGAACTTGGGGGTAAGTCCACAGCGT
GGGGCCCTCATGGCAAGCAGTTGTTGCGCTCGACAAATTGTGGATGGTTT
TCACGAACTGCCTGGTTCGCGATTTGCGTCAAGAGTGCCGTGAACGGTCC
ACAGGGCATCGCTCGCGTAAGTGGGGGCGCCTGTAAAGCCCAAGTTACAG
GTACACAAGTTGCTGCGACCGTGTCAATTTTGAAGCCCGAACTAGCTTCT
CCGTGGGAGTGCCTGCGAAAGGATGATGGTGGGTGATTTTCCCCTTGGAT
TGCCCAAAGGTCAGGTCCAAGGAATGGTTTGGAGGCGTATTTTTTTGTAT
GTCTGGGACAGTTGTTGTGCTCGCTTCGACACGGCTTGTTGGTAAAGCTA
GAATACGAGGTACATTTTTCATTCGTGGTGTCGGACGGTCGTTGAAACTG
GGCTCAACCCGGATGGTGAAAGGCGAAACTATAATGCGTTTAGTTTTTCG
CCGGAGTGTACATAAGCTCTAGCTCTTAAGAGTAGGTATCCTGTTGCAGG
CGTCATTATTCAGCCGGCGAGCCGATGCCAGGATCTCTCAACTTTTGATC
GTGCACCTCGGATGTCGTGGGTACGAATGAGGCAGGGACAAGCCTGCATG
CCCCTGTGGCGATGTGAAACGTGAAGGGGAATCACAGGGTTGGGTGAGGG
AACGTCGAAGCTCCCGGGTGTTGTTGGGGTGTGTACGGTCGTCACTAGCA
GTGCGCAAACGTGTTTTATCACTTTTGTGACTGAGCCTGTGTTCGGGGCA
ATATGCCCGCCACCGTAGTTCGCACCGAGCCGTGACCGAACGGTAGCCAC
TCCTCGCCTTACAATAGACCTTGTCCTGGAGTATTTGCCTGAACGATTGA
GTGGTGGTGGAAACGCGGAATGTAAAACGTAAAACTGCCACGCTTTTAGC
TTGCATGCGCTGTGTGTGCTCGTGTTCGTGTACCCGTCACCCGTCCGGGA
TTTAGGTATTGTACCCGTAGTGACGCGATAGTCGGCGCAAAACAGGTAGA
CTCGGTCCCAAAAGGGTTAAACTTTAAAGCGAGGGGGGGGTGTCGGCCAG
TCAGTAGGGAGACCAATTTCGGCATCCCGTGGTGGCAATTGGAACCCCGG
GTGTTGACAAGGAAAGCCTGAACCAAGCGCTCGCGGGGTGCCAAACTCGG
AGCCTTACAGCCCCCTCATCCAGTTCCCGTCGGGACAACTCGGCCACGGT
TAACACAGTATCCGTTACTCCCTCAGAGACCGTAGTACGTAGTCGCCATT
GAAAGACGGATTGGAGACGTTTCTCCATGGATGGATAGAACGAGGACCGT
ACCGACATACTGTATATATATATACGTATTGTTTACCCATTGCAGAAGCC
TTTTCCGCTCTACTGGTACGTGTTGTGATTTTCGTCGAAGCTGTCGTGGT
CGTGGTCGTGGTCGGTGAACGTACGGAACCTCTTGGGGTATTCATGCTGC
CAGAGAGAGGGCAAGGGAATAAAATTGTTACCTCCTGTATATGTACAAGT
ATATTACAGTAGGAGCACCACAATAGTGTACCAGGTATGTATGTATTTGT
AAAATTTCTCCAAGCGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12453:1638..4956-

>mRNA_S-dermatodea_contig12453.1525.1 ID=mRNA_S-dermatodea_contig12453.1525.1|Name=mRNA_S-dermatodea_contig12453.1525.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig12453:1638..4956- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAGCTTACCAGATGCGAGCTTACCAGGTGAAGGAGAAGAGCGCTCT
TCACCTCCTCTTCGGCCTTCCTGCGCGAGCAATCCGATATTCCCTTGGCT
TCCAGATGTTCGGCTTCCGGGAGAAGGCTTCACGGCAGCAGCAGCAGCAG
CAGACGTGGTCTTCGAACACCAGCAGCGCGATAAGCGCAAGCAGCTCAAG
GGCCGATCCGTCGGCTGCCACCGCCAGTGGCGAAGCTGCTGCTAAATCCG
CACCCCGTGGCCGCGTGCGTCTATCCGGGTTCGGTCAAGTGGGAATGGGT
GGGAGCGTAGCCCTGTGCGACCCCGCGTCTGGCCTGGCGTTTGCGATGGT
CACCAACAAGGTGAAGGAGAAGAGCGCTCTTCACCTCCTCTTCGGCCTTC
CTGCGCGAGCAATCCGATATTCCCTTGGCTTCCAGATGTTCGGCTTCCGG
GAGAAGGCTTCACGGCAGCAGCAGCAGCAGCAGACGTGGTCTTCGAACAC
CAGCAGCGCGATAAGCGCAAGCAGCTCAAGGGCCGATCCGTCGGCTGCCA
CCGCCAGTGGCGAAGCTGCTGCTAAATCCGCACCCCGTGGCCGCGTGCGT
CTATCCGGGTTCGGTCAAGTGGGAATGGGTGGGAGCGTAGCCCTGTGCGA
CCCCGCGTCTGGCCTGGCGTTTGCGATGGTCACCAACAAGGTTGAGACCG
GCCGCAAGTCTTCGTCAACCGTGCTGAGCCTCGTGTGCGAGGAGCTGGGA
ATTGGTGACCCATCTAATTTTTTTGAAGACTAAGTTGAGACCGGCCGCAA
GTCTTCGTCAACCGTGCTGAGCCTCGTGTGCGAGGAGCTGGGAATTGGTG
ACCCATCTAATTTTTTTGAAGACTAA
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