mRNA_S-dermatodea_contig12386.1493.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12386.1493.1
Unique NamemRNA_S-dermatodea_contig12386.1493.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A6H5KV05_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV05_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.660e-48
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            T++HEG STVLEV E TTIL+AALDNDI+LPHDCKLGVCLTCPS +VSGE+DQS+GTL+DSV   G+ALTCC+Y RSDV IRSVEED+LVGAQF
Sbjct:   67 TIEHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQF 160          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A7S2V4F7_9STRA (Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4F7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.200e-47
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            T+QHEGK TVLEV E TTIL+AALD  I+LPHDC+LGVCLTCPS IVSGE+DQ  GTLDDSVVEQGFALTC SYPRSD V+RSVEED++V AQF
Sbjct:   54 TIQHEGKDTVLEVDESTTILEAALDAGIDLPHDCQLGVCLTCPSRIVSGEVDQGMGTLDDSVVEQGFALTCISYPRSDCVVRSVEEDEMVNAQF 147          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A836CGC2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.280e-44
Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQFEREE 300
            T++  GKS  LEV E+T++L+AALD  IELPHDCKLGVCLTCPS IVSGE+DQ   TLDDSVVEQG+ALTCCS+PRSD+VIR+++ED+LVGAQFE  E
Sbjct:   58 TIEVAGKSHTLEVDEKTSVLEAALDAGIELPHDCKLGVCLTCPSKIVSGEVDQDGTTLDDSVVEQGYALTCCSFPRSDLVIRAIDEDELVGAQFEGRE 155          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A7S3UW21_HETAK (Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW21_HETAK)

HSP 1 Score: 142 bits (359), Expect = 9.470e-42
Identity = 66/94 (70.21%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            T++HEG +TVLEV E T+ILDAALD  I+LPHDCKLGVCLTCPS +VSGE+DQS+GTL+DSV  QG+ALTC ++PRSD  I S+ ED+LV AQF
Sbjct:   45 TIEHEGTTTVLEVPEYTSILDAALDAGIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTAQGYALTCMTFPRSDCTIMSITEDELVDAQF 138          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A482SDV3_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDV3_9ARCH)

HSP 1 Score: 139 bits (350), Expect = 2.280e-40
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQFER 294
            T+QHEGK T+L+V +  +IL+AALD  I+LPHDCKLGVCLTCPS IVSG++DQS+GTL  SV  +G+ALTC S+P SDVV+RS+EED+LV AQF R
Sbjct:   46 TIQHEGKDTILDVQDDCSILNAALDAGIDLPHDCKLGVCLTCPSKIVSGKVDQSDGTLAKSVQAKGYALTCVSFPCSDVVVRSIEEDELVSAQFSR 141          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A5K0VF29_9MAGN (Ferredoxin n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0VF29_9MAGN)

HSP 1 Score: 126 bits (317), Expect = 3.000e-35
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            T+ HEGKST LEV E  +IL+ ALD  +E+PHDCKLGVC+TCP+ +VSGE+DQS G L D VVE+G+AL C SYPRSD  IR++ E++L+  Q 
Sbjct:   53 TIDHEGKSTTLEVGEDESILERALDEGLEVPHDCKLGVCMTCPARLVSGEVDQSGGMLSDDVVERGYALLCASYPRSDCHIRTIPEEELLSLQL 146          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: UPI001ADA50ED (ferredoxin C 1, chloroplastic n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADA50ED)

HSP 1 Score: 123 bits (309), Expect = 3.770e-34
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 RPTMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            R T++H G+S V+EV E  TIL  ALD  I++PHDCKLGVC+TCP+ +V+GE+DQS+G L D VV QG+AL C SYPRSD  IR + ED+L+  Q 
Sbjct:   42 RVTIEHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQL 137          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: J3LRB4_ORYBR (Ferredoxin n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LRB4_ORYBR)

HSP 1 Score: 123 bits (309), Expect = 5.050e-34
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 RPTMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            R T++H G+S V+EV E  TIL  ALD  I++PHDCKLGVC+TCP+ +V+GE+DQS+G L D VV QG+AL C SYPRSD  IR + ED+L+  Q 
Sbjct:   52 RVTIEHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQL 147          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A8J5WV81_ZIZPA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WV81_ZIZPA)

HSP 1 Score: 123 bits (308), Expect = 5.680e-34
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            T++H G+S V+EV E  TIL+ ALD  I++PHDCKLGVC+TCP+ +V+G++DQS+G L D VV QG+AL C SYPRSD  IR + ED+L+  Q 
Sbjct:   46 TIEHAGESRVVEVEEHETILERALDEGIDVPHDCKLGVCMTCPARLVAGQVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQL 139          
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: Q850T5_ORYSJ (Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_ORYSJ)

HSP 1 Score: 122 bits (306), Expect = 1.250e-33
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
            T++H G+S V+EV E  TIL  ALD  I++PHDCKLGVC+TCP+ +V+GE+DQS+G L D VV QG+AL C SYPRSD  IR + ED+L+  Q 
Sbjct:   49 TIEHGGESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLKVQL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV05_9PHAE2.660e-4878.722Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2V4F7_9STRA2.200e-4779.79Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617... [more]
A0A836CGC2_9STRA1.280e-4472.452Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3UW21_HETAK9.470e-4270.21Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A482SDV3_9ARCH2.280e-4067.712Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A5K0VF29_9MAGN3.000e-3560.64Ferredoxin n=2 Tax=Nymphaea colorata TaxID=210225 ... [more]
UPI001ADA50ED3.770e-3458.33ferredoxin C 1, chloroplastic n=1 Tax=Oryza brachy... [more]
J3LRB4_ORYBR5.050e-3458.33Ferredoxin n=1 Tax=Oryza brachyantha TaxID=4533 Re... [more]
A0A8J5WV81_ZIZPA5.680e-3457.452Fe-2S ferredoxin-type domain-containing protein n... [more]
Q850T5_ORYSJ1.250e-3358.51Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12386contigS-dermatodea_contig12386:4447..5431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.4e-36
Seed eggNOG ortholog2880.D7G156
KEGG koko:K02639
KEGG Pathwayko00195,map00195
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009642,GO:0009644,GO:0009987,GO:0016491,GO:0022900,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051537,GO:0051540,GO:0055114
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGs2RZRG@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-08_005330.1
Exons2
Model size303
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12386.1493.1prot_S-dermatodea_contig12386.1493.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12386 4447..5422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.2670517-CDS-S-dermatodea_contig12386:4446..45481622924246.2670517-CDS-S-dermatodea_contig12386:4446..4548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12386 4447..4548 -
1694079121.9936907-CDS-S-dermatodea_contig12386:4446..45481694079121.9936907-CDS-S-dermatodea_contig12386:4446..4548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12386 4447..4548 -
1622924246.280846-CDS-S-dermatodea_contig12386:5230..54221622924246.280846-CDS-S-dermatodea_contig12386:5230..5422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12386 5231..5422 -
1694079122.0065525-CDS-S-dermatodea_contig12386:5230..54221694079122.0065525-CDS-S-dermatodea_contig12386:5230..5422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12386 5231..5422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.2913213-UTR-S-dermatodea_contig12386:5422..54311622924246.2913213-UTR-S-dermatodea_contig12386:5422..5431Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12386 5423..5431 -
1694079122.0165927-UTR-S-dermatodea_contig12386:5422..54311694079122.0165927-UTR-S-dermatodea_contig12386:5422..5431Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12386 5423..5431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12386.1493.1

>prot_S-dermatodea_contig12386.1493.1 ID=prot_S-dermatodea_contig12386.1493.1|Name=mRNA_S-dermatodea_contig12386.1493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
MQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEI
DQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQFEREE*
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mRNA from alignment at S-dermatodea_contig12386:4447..5431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12386.1493.1 ID=mRNA_S-dermatodea_contig12386.1493.1|Name=mRNA_S-dermatodea_contig12386.1493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=985bp|location=Sequence derived from alignment at S-dermatodea_contig12386:4447..5431- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTCCGACAATGCAGCATGAGGGAAAGAGCACCGTGCTGGAGGTGAGCGA GAGAACCACCATCCTAGACGCGGCCCTCGACAACGACATCGAGCTGCCGC ACGACTGCAAGCTCGGGGTTTGTCTGACCTGCCCCTCCTTGATCGTGAGC GGGGAAATTGACCAGAGCGAGGGAACGCTGGACGACAGCGTTGTTGAACA GGTGAGGCCGCGACCTTTATACACATACTCTTTGTTTTGCACAAAAATCA TGATATCCATCCCCTATTAGTTCTACTGTATTAGTTGGAGCAAGGTTGCC GGCCCCGGCAGTAGCCTATGCCGGATGAGCAGTAGAAATATATAGGATTT AGAGTTGAAAATGGCTAACGTTTTTCGCGGGATTTTCTAATTATAATTTG TTTGAATTAAAAAAAAGAAGAAAAAAAAATGAACAGCCCATACCCACACT ATTTCCTATATATTTCCGGTGACAAGTTCGCATACGCACCTCCCCCACCT ATCCACCCACCCCACCCCAACCCACCCCTAAAAAATTGAATGATTTCAAA AGCGTAGAGAGAGCGTTGGGGTCCCACCTTTTCAAGAGGGAGGATGGTCC AAGCTACACCTATGGAGGCTCACTTTTTGCGTACGATACTATGGTGTCCA TGTCATGTGTGGTGCTATTCATATGGTTATGGTACAAGAGTCTTTGCCCT GAGCGATATCCTGGTAATGCATGTTTGATGTGCCCTTGCGAGCCAAGAAT TTTAAAGTTTCCTTTCTGCCGCATACTTTGGTCCACCCCACCCAACCCCA CCCAACCCCCACAAAACCCCCACCCAACCCCCACACAACCCCCACACAAC CCCACCCTGCCCACGCGATAACGCACGATCCAGGGGTTCGCACTGACCTG CTGCAGCTACCCTCGGTCGGATGTGGTGATCCGGTCTGTAGAGGAGGATA AGCTCGTCGGTGCCCAGTTCGAACGCGAGGAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12386:4447..5431-

>mRNA_S-dermatodea_contig12386.1493.1 ID=mRNA_S-dermatodea_contig12386.1493.1|Name=mRNA_S-dermatodea_contig12386.1493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig12386:4447..5431- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGCATGAGGGAAAGAGCACCGTGCTGGAGGTGAGCGAGAGAACCAC
CATCCTAGACGCGGCCCTCGACAACGACATCGAGCTGCCGCACGACTGCA
AGCTCGGGGTTTGTCTGACCTGCCCCTCCTTGATCGTGAGCGGGGAAATT
GACCAGAGCGAGGGAACGCTGGACGACAGCGTTGTTGAACAGATGCAGCA
TGAGGGAAAGAGCACCGTGCTGGAGGTGAGCGAGAGAACCACCATCCTAG
ACGCGGCCCTCGACAACGACATCGAGCTGCCGCACGACTGCAAGCTCGGG
GTTTGTCTGACCTGCCCCTCCTTGATCGTGAGCGGGGAAATTGACCAGAG
CGAGGGAACGCTGGACGACAGCGTTGTTGAACAGGGGTTCGCACTGACCT
GCTGCAGCTACCCTCGGTCGGATGTGGTGATCCGGTCTGTAGAGGAGGAT
AAGCTCGTCGGTGCCCAGTTCGAACGCGAGGAATAAGGGTTCGCACTGAC
CTGCTGCAGCTACCCTCGGTCGGATGTGGTGATCCGGTCTGTAGAGGAGG
ATAAGCTCGTCGGTGCCCAGTTCGAACGCGAGGAATAA
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