mRNA_S-dermatodea_contig12386.1493.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A6H5KV05_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV05_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.660e-48 Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
T++HEG STVLEV E TTIL+AALDNDI+LPHDCKLGVCLTCPS +VSGE+DQS+GTL+DSV G+ALTCC+Y RSDV IRSVEED+LVGAQF
Sbjct: 67 TIEHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQF 160
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A7S2V4F7_9STRA (Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4F7_9STRA) HSP 1 Score: 157 bits (397), Expect = 2.200e-47 Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
T+QHEGK TVLEV E TTIL+AALD I+LPHDC+LGVCLTCPS IVSGE+DQ GTLDDSVVEQGFALTC SYPRSD V+RSVEED++V AQF
Sbjct: 54 TIQHEGKDTVLEVDESTTILEAALDAGIDLPHDCQLGVCLTCPSRIVSGEVDQGMGTLDDSVVEQGFALTCISYPRSDCVVRSVEEDEMVNAQF 147
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A836CGC2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC2_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.280e-44 Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQFEREE 300
T++ GKS LEV E+T++L+AALD IELPHDCKLGVCLTCPS IVSGE+DQ TLDDSVVEQG+ALTCCS+PRSD+VIR+++ED+LVGAQFE E
Sbjct: 58 TIEVAGKSHTLEVDEKTSVLEAALDAGIELPHDCKLGVCLTCPSKIVSGEVDQDGTTLDDSVVEQGYALTCCSFPRSDLVIRAIDEDELVGAQFEGRE 155
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A7S3UW21_HETAK (Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW21_HETAK) HSP 1 Score: 142 bits (359), Expect = 9.470e-42 Identity = 66/94 (70.21%), Postives = 80/94 (85.11%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
T++HEG +TVLEV E T+ILDAALD I+LPHDCKLGVCLTCPS +VSGE+DQS+GTL+DSV QG+ALTC ++PRSD I S+ ED+LV AQF
Sbjct: 45 TIEHEGTTTVLEVPEYTSILDAALDAGIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTAQGYALTCMTFPRSDCTIMSITEDELVDAQF 138
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A482SDV3_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDV3_9ARCH) HSP 1 Score: 139 bits (350), Expect = 2.280e-40 Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQFER 294
T+QHEGK T+L+V + +IL+AALD I+LPHDCKLGVCLTCPS IVSG++DQS+GTL SV +G+ALTC S+P SDVV+RS+EED+LV AQF R
Sbjct: 46 TIQHEGKDTILDVQDDCSILNAALDAGIDLPHDCKLGVCLTCPSKIVSGKVDQSDGTLAKSVQAKGYALTCVSFPCSDVVVRSIEEDELVSAQFSR 141
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A5K0VF29_9MAGN (Ferredoxin n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0VF29_9MAGN) HSP 1 Score: 126 bits (317), Expect = 3.000e-35 Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
T+ HEGKST LEV E +IL+ ALD +E+PHDCKLGVC+TCP+ +VSGE+DQS G L D VVE+G+AL C SYPRSD IR++ E++L+ Q
Sbjct: 53 TIDHEGKSTTLEVGEDESILERALDEGLEVPHDCKLGVCMTCPARLVSGEVDQSGGMLSDDVVERGYALLCASYPRSDCHIRTIPEEELLSLQL 146
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: UPI001ADA50ED (ferredoxin C 1, chloroplastic n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADA50ED) HSP 1 Score: 123 bits (309), Expect = 3.770e-34 Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 RPTMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
R T++H G+S V+EV E TIL ALD I++PHDCKLGVC+TCP+ +V+GE+DQS+G L D VV QG+AL C SYPRSD IR + ED+L+ Q
Sbjct: 42 RVTIEHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQL 137
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: J3LRB4_ORYBR (Ferredoxin n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LRB4_ORYBR) HSP 1 Score: 123 bits (309), Expect = 5.050e-34 Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 1 RPTMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
R T++H G+S V+EV E TIL ALD I++PHDCKLGVC+TCP+ +V+GE+DQS+G L D VV QG+AL C SYPRSD IR + ED+L+ Q
Sbjct: 52 RVTIEHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQL 147
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: A0A8J5WV81_ZIZPA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WV81_ZIZPA) HSP 1 Score: 123 bits (308), Expect = 5.680e-34 Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
T++H G+S V+EV E TIL+ ALD I++PHDCKLGVC+TCP+ +V+G++DQS+G L D VV QG+AL C SYPRSD IR + ED+L+ Q
Sbjct: 46 TIEHAGESRVVEVEEHETILERALDEGIDVPHDCKLGVCMTCPARLVAGQVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQL 139
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Match: Q850T5_ORYSJ (Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_ORYSJ) HSP 1 Score: 122 bits (306), Expect = 1.250e-33 Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 7 TMQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIDQSEGTLDDSVVEQGFALTCCSYPRSDVVIRSVEEDKLVGAQF 288
T++H G+S V+EV E TIL ALD I++PHDCKLGVC+TCP+ +V+GE+DQS+G L D VV QG+AL C SYPRSD IR + ED+L+ Q
Sbjct: 49 TIEHGGESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLKVQL 142 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12386.1493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12386.1493.1 >prot_S-dermatodea_contig12386.1493.1 ID=prot_S-dermatodea_contig12386.1493.1|Name=mRNA_S-dermatodea_contig12386.1493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp MQHEGKSTVLEVSERTTILDAALDNDIELPHDCKLGVCLTCPSLIVSGEIback to top mRNA from alignment at S-dermatodea_contig12386:4447..5431- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12386.1493.1 ID=mRNA_S-dermatodea_contig12386.1493.1|Name=mRNA_S-dermatodea_contig12386.1493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=985bp|location=Sequence derived from alignment at S-dermatodea_contig12386:4447..5431- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12386:4447..5431- >mRNA_S-dermatodea_contig12386.1493.1 ID=mRNA_S-dermatodea_contig12386.1493.1|Name=mRNA_S-dermatodea_contig12386.1493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig12386:4447..5431- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |