mRNA_S-dermatodea_contig12376.1487.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12376.1487.1
Unique NamemRNA_S-dermatodea_contig12376.1487.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A6H5KBH2_9PHAE (EF1_GNE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH2_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 9.160e-77
Identity = 166/200 (83.00%), Postives = 174/200 (87.00%), Query Frame = 1 
Query:    4 QADADMFATSTGVPDKAKAPHAYRWFIHIAAIKGVRSLSMAPSSGSAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AKPT-KSRAEQMAEAKAAKDSKKKVDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            QADADMFAT  GVPDKAKAPHAYRW+IHIAAIKGVRSLS+APSSGSAPAAXXXXXXXXXX        XXXXXXXXXXXXXX    AKP  KSRAE+MAEAKAAKD+KKKVDRSQIVFEVKPW+ E DLKGLF KI K  I+GLVWGEA+KL PVAFGVKKL+LSCVV DDKVGVEDITD IE FEDEVQSVDMTTMNRL
Sbjct:   33 QADADMFATCAGVPDKAKAPHAYRWYIHIAAIKGVRSLSLAPSSGSAPAAXXXXXXXXXXAAKATKVDXXXXXXXXXXXXXXXXXAAKPAEKSRAEKMAEAKAAKDAKKKVDRSQIVFEVKPWDTETDLKGLFAKICKTKIEGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEGFEDEVQSVDMTTMNRL 232
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: D8LM77_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM77_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 5.830e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:  265 SRAEQMAEAKAAKDSKKKVDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            SRAEQMA AK+AKD+ KKVDRSQIVFEVKPWEA ADLKGLF+KIRK  IDGLVWGEA+KL PVAFGVKKL+LSCVVVD KVGVEDITD IE FEDEVQSVDMTTMNRL
Sbjct:  742 SRAEQMAAAKSAKDANKKVDRSQIVFEVKPWEAGADLKGLFDKIRKTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKVGVEDITDVIEKFEDEVQSVDMTTMNRL 849
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A6H5JFV9_9PHAE (EF1_GNE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFV9_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.000e-45
Identity = 87/108 (80.56%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:  265 SRAEQMAEAKAAKDSKKKVDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            SRA++MA AK AKD+KKK+DRSQIVFEVKPW+ E DLK LF KI    IDGLVWGEA+KL PVAFGVKKL+LSCVV DDKVGVEDITD IEAFED VQSVDMTTMNRL
Sbjct:   75 SRADKMAAAKKAKDAKKKIDRSQIVFEVKPWDTETDLKELFGKICATEIDGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEAFEDYVQSVDMTTMNRL 182
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A485LAV1_9STRA (Aste57867_18076 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAV1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.140e-35
Identity = 108/198 (54.55%), Postives = 144/198 (72.73%), Query Frame = 1 
Query:    7 ADADMFATSTGVPDKAKAPHAYRWFIHIAAIKGVRSLSMAPSSGSAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKSRAEQMAEAKAAKDSKKK----VDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            AD+ +FA     PD  K P+ YRW++H A+  G+R ++++  SG+A AA     XXXXXXXXXXXXXXXXXXXXXXXXXXX             A+AAK +KK+    ++RSQ+V EVKPWEAE DL+ L  KI+ + +DGL WGE +KL PVAFG+KKL++ C+++DDKV ++DITDAIE+FED VQSVD+ +MN++
Sbjct:   33 ADSALFAKVPSTPDAGKYPNVYRWYVHTASKLGLR-VALSAQSGTAAAAPKASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEAAKANKKEKPKPIERSQVVIEVKPWEAETDLEELAVKIKALEVDGLTWGEGHKLVPVAFGIKKLLVQCIIIDDKVLMDDITDAIESFEDYVQSVDIASMNKM 229
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A7S2UXP5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP5_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.240e-35
Identity = 108/201 (53.73%), Postives = 137/201 (68.16%), Query Frame = 1 
Query:    7 ADADMFATSTGVPDKAKAPHAYRWFIHIAAIKGVRSL-------SMAPSSGSAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKSRAEQMAEAKAAKDSKKKVDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            AD  +FA   G PDK+   HAYRW++HIAA+ GV+S+       + AP++   PA       XXXXXXXXXXXXXXXXXXXXXXXXXX                     K V+RSQ++FEVKPWEA+ DLK LF KI  +  +GL WGE Y+++PVAFG+ KL++SCV+VDD VG++D+TD IEA EDEVQSVD+ TMN++
Sbjct:   35 ADQSVFAQINGAPDKSSYVHAYRWYLHIAALGGVKSIISAVVAPAPAPATSQPPAGKGKKAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXAKPVERSQLIFEVKPWEADQDLKSLFAKITALKKEGLSWGEGYEIKPVAFGIMKLVMSCVIVDDLVGMDDVTDPIEAMEDEVQSVDVLTMNKM 232
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A6G0WJF4_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJF4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.550e-34
Identity = 103/198 (52.02%), Postives = 140/198 (70.71%), Query Frame = 1 
Query:    7 ADADMFATSTGVPDKAKAPHAYRWFIHIAAIKGVRSLSMAPSSGSAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKSRAEQMAEAKAAKDSKKK----VDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            AD+++FA     PD +K P+ YRW++H AA  G+  ++++  S +  A XXXXXXXXXXXXX        XXXXXXXXXXX             A+AAK +KK+    ++RSQ+V EVKPWEAE DL+ L  KI++V +DGL WGE +KL PVAFG+KKL++ C+++DDKV ++DIT+AIEAFED VQSVD+ +MN++
Sbjct:   33 ADSNLFAKVPATPDASKYPNVYRWYVHTAAKLGLH-VALSAQSATPAAXXXXXXXXXXXXXXPAKKEAEDXXXXXXXXXXXXXXXXXXXXXXXRAEAAKANKKEKPKPIERSQVVIEVKPWEAETDLEELAAKIKQVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKVLMDDITEAIEAFEDYVQSVDIASMNKM 229
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A835ZFP2_9STRA (EF-1 guanine nucleotide exchange domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.960e-33
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:  265 SRAEQMAEAKAAKDSKKKVDRSQIVFEVKPWEAEADLKGLFEKIRK-VVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNR 585
            SRAEQMA AKAAKD KKK++ S +V+EVKPWEA+ DLK L+EKI+K   +DGL W E   L PVAFG+ KL+++C + DDKVG+ DI+D IEA ED+VQSVD+  M R
Sbjct:   77 SRAEQMAAAKAAKDKKKKIEMSNVVYEVKPWEADQDLKALYEKIKKECAMDGLRWSEGCTLAPVAFGINKLVIACTIEDDKVGLNDISDMIEALEDDVQSVDLINMQR 184
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: W4FR25_9STRA (EF1_GNE domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR25_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.750e-33
Identity = 100/202 (49.50%), Postives = 129/202 (63.86%), Query Frame = 1 
Query:    7 ADADMFATSTGVPDKAKAPHAYRWFIHIAAIKGVRSLSMA------PSSGSAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKSRAEQMAEAKAA--KDSKKKVDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            AD+ +F+  T VPD AK P+ YRW++H A+  G+R    A      PSS  A A     X           XXXXXXXXXXXXXXXX           A+A  A  K+  K V+RSQ+V EVKPWEAE DL  L  KI+ + I+GL WGE +KL PVA+G+KKL++ C++VDD V ++DITDAIE+FED VQSVD+ +MN++
Sbjct:   33 ADSTLFSKFTTVPDAAKVPNVYRWYVHTASKLGLRVALTARNQVAQPSSPKAAAKPSTPXASTPKAAKPADXXXXXXXXXXXXXXXXXXXXXXXXXXRADAAKAGKKEKAKPVERSQVVIEVKPWEAETDLLDLAAKIKALEINGLTWGEGHKLVPVAYGIKKLLVQCIIVDDLVLLDDITDAIESFEDFVQSVDVASMNKV 234
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A835YW42_9STRA (Eukaryotic elongation factor-1 B beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW42_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.080e-32
Identity = 107/194 (55.15%), Postives = 135/194 (69.59%), Query Frame = 1 
Query:    7 ADADMFATSTGVPDKAKAPHAYRWFIHIAAIKGVRSLSMAPSSGSAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKSRAEQMAEAKAAKDSKKKVDRSQIVFEVKPWEAEADLKGLFEKIR-KVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNR 585
            AD+ +FA   G PDKA  PHAYRW+IH+AA+ G+RSL+++ ++      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      K++ S +V+EVKPWEA+ DLK L+EKI+ K  +DGL W E   L PVAFG+ KL+++C + DDKVG+ DI+D IEA ED+VQSVD+  M R
Sbjct:   35 ADSALFAACNGAPDKATYPHAYRWYIHVAALTGLRSLNLSAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIEMSNVVYEVKPWEADQDLKALYEKIKEKCAMDGLRWSEGCTLAPVAFGINKLVIACTIEDDKVGLNDISDMIEALEDDVQSVDLVNMQR 228
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BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Match: A0A024TSA9_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSA9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.430e-32
Identity = 105/207 (50.72%), Postives = 133/207 (64.25%), Query Frame = 1 
Query:    7 ADADMFATSTGVPDKAKAPHAYRWFIHIAAIKGVR-SLSMAPSSGSAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPTKS-----------RAEQMAEAKAAKDSKKK-VDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVKKLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL 588
            AD+ +FA    VPD AK P+ YRW+IHIA+  G+R +L+    S + P+    XXXXXXXXX           XXXXXXXXX                 RAE    AKA K  K K V+RSQ+V EVKPWEAE DL  L  KI+ + I+GL WGE +KL PVAFG+KKL++ C++VDD V ++DIT+AIEAFED VQSVD+ +MN++
Sbjct:   33 ADSALFAKFNAVPDAAKVPNVYRWYIHIASKLGLRVALAARTPSAAKPSTPKAXXXXXXXXXSTPKGKKPAADXXXXXXXXXXXXXXXXXXXXXXXXXXRAEA---AKAGKKEKAKPVERSQVVLEVKPWEAETDLVELAGKIKALEINGLNWGEGHKLVPVAFGIKKLLIQCIIVDDLVLLDDITEAIEAFEDYVQSVDVASMNKV 236
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12376.1487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH2_9PHAE9.160e-7783.00EF1_GNE domain-containing protein n=2 Tax=Ectocarp... [more]
D8LM77_ECTSI5.830e-4587.04Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A6H5JFV9_9PHAE7.000e-4580.56EF1_GNE domain-containing protein n=3 Tax=Ectocarp... [more]
A0A485LAV1_9STRA1.140e-3554.55Aste57867_18076 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2UXP5_9STRA1.240e-3553.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0WJF4_9STRA1.550e-3452.02EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A835ZFP2_9STRA5.960e-3362.04EF-1 guanine nucleotide exchange domain-containing... [more]
W4FR25_9STRA8.750e-3349.50EF1_GNE domain-containing protein n=3 Tax=Aphanomy... [more]
A0A835YW42_9STRA2.080e-3255.15Eukaryotic elongation factor-1 B beta n=1 Tax=Trib... [more]
A0A024TSA9_9STRA6.430e-3250.72EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12376contigS-dermatodea_contig12376:1113..6764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.4
Seed ortholog evalue8.4e-62
Seed eggNOG ortholog2880.D8LPS7
Preferred nameCARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K15410
KEGG ReactionR02918,R03650,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG2092@1,KOG1668@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic elongation factor-1 B beta
Ec32 orthologEc-18_002310.1
Exons6
Model size1620
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12376.1487.1prot_S-dermatodea_contig12376.1487.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12376 1131..5735 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924245.6879983-UTR-S-dermatodea_contig12376:1112..11301622924245.6879983-UTR-S-dermatodea_contig12376:1112..1130Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12376 1113..1130 +
1694079121.539177-UTR-S-dermatodea_contig12376:1112..11301694079121.539177-UTR-S-dermatodea_contig12376:1112..1130Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12376 1113..1130 +
1622924245.759601-UTR-S-dermatodea_contig12376:5735..67641622924245.759601-UTR-S-dermatodea_contig12376:5735..6764Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12376 5736..6764 +
1694079121.635508-UTR-S-dermatodea_contig12376:5735..67641694079121.635508-UTR-S-dermatodea_contig12376:5735..6764Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12376 5736..6764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924245.6978874-CDS-S-dermatodea_contig12376:1130..12251622924245.6978874-CDS-S-dermatodea_contig12376:1130..1225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 1131..1225 +
1694079121.5510254-CDS-S-dermatodea_contig12376:1130..12251694079121.5510254-CDS-S-dermatodea_contig12376:1130..1225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 1131..1225 +
1622924245.7091334-CDS-S-dermatodea_contig12376:2640..27011622924245.7091334-CDS-S-dermatodea_contig12376:2640..2701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 2641..2701 +
1694079121.5614407-CDS-S-dermatodea_contig12376:2640..27011694079121.5614407-CDS-S-dermatodea_contig12376:2640..2701Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 2641..2701 +
1622924245.718372-CDS-S-dermatodea_contig12376:3566..37181622924245.718372-CDS-S-dermatodea_contig12376:3566..3718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 3567..3718 +
1694079121.577222-CDS-S-dermatodea_contig12376:3566..37181694079121.577222-CDS-S-dermatodea_contig12376:3566..3718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 3567..3718 +
1622924245.7270515-CDS-S-dermatodea_contig12376:4321..43971622924245.7270515-CDS-S-dermatodea_contig12376:4321..4397Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 4322..4397 +
1694079121.5953758-CDS-S-dermatodea_contig12376:4321..43971694079121.5953758-CDS-S-dermatodea_contig12376:4321..4397Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 4322..4397 +
1622924245.7360716-CDS-S-dermatodea_contig12376:4779..48811622924245.7360716-CDS-S-dermatodea_contig12376:4779..4881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 4780..4881 +
1694079121.614251-CDS-S-dermatodea_contig12376:4779..48811694079121.614251-CDS-S-dermatodea_contig12376:4779..4881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 4780..4881 +
1622924245.7459342-CDS-S-dermatodea_contig12376:5648..57351622924245.7459342-CDS-S-dermatodea_contig12376:5648..5735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 5649..5735 +
1694079121.6250553-CDS-S-dermatodea_contig12376:5648..57351694079121.6250553-CDS-S-dermatodea_contig12376:5648..5735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12376 5649..5735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12376.1487.1

>prot_S-dermatodea_contig12376.1487.1 ID=prot_S-dermatodea_contig12376.1487.1|Name=mRNA_S-dermatodea_contig12376.1487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=191bp
MFATSTGVPDKAKAPHAYRWFIHIAAIKGVRSLSMAPSSGSAPAAAPAST
PKAAPAAKEDEDDDEDDLFGDDDAEEEAKPTKSRAEQMAEAKAAKDSKKK
VDRSQIVFEVKPWEAEADLKGLFEKIRKVVIDGLVWGEAYKLQPVAFGVK
KLILSCVVVDDKVGVEDITDAIEAFEDEVQSVDMTTMNRL*
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mRNA from alignment at S-dermatodea_contig12376:1113..6764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12376.1487.1 ID=mRNA_S-dermatodea_contig12376.1487.1|Name=mRNA_S-dermatodea_contig12376.1487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5652bp|location=Sequence derived from alignment at S-dermatodea_contig12376:1113..6764+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACAGGCGGATGCGGACATGTTCGCCACCTCCACTGGCGTCCCGGACAA
GGCGAAGGCGCCGCACGCCTACCGCTGGTTCATCCACATCGCCGCCATCA
AGGGCGTGCGCAGGTGCGACCTGCATCTGTTTTTGTTCTTTCATGTTTCA
TAGTAGGTATTAATAGCCATGGCTTCGCCCGTGAGGTGTGCGTTGCCAGG
ACGACATGTCGGTGGCGGTAGTACCCACGGCAGGCGTTCACCCACGAAGG
AAGCCGAGCGTGCAAGAACGGGCTGGCTGCTGCTGCTGTGTGTGTGCAGT
GGCCGTGCGTTTTGTGGGCTGTCTCCATAAGATTATGTCTCGTGTTTCCG
TTGGTAGCTGCTGCCTGTGGCGGCGCGGCGGCGTGGGCAACGTGGGAGCT
AGAGTGAGCGAGCGATCGACCCAGGCGAGCAGAGGGAGAGGCAAAGGAGT
AGGTGATAACAGAAGTAGGAAATAAACCACGAAAAAGCAAAGCAAAAGAG
GTTTCAAGTTACACACATTGTATCATAACCTATCGATATGGGTGCTGCTC
CCGGCAGACAGAGAGGTTGTTGTGCTCGATGAGAGAGGTTGCTTAGCACA
GAGGCAGCACGTAGCTGGCTGCAGGCCGGCGCGGGCGGCGGGCTGCTGTA
TGCATGCCTGCGGGATGTTCTGTCTGGCAGCTCGCTGCTGCTTGTGTGCA
GTGGCGCGTTTTTTGTGCTGTCTCGAGAAGATGCTATGTATGTTGTTTGC
GTTGGTGGCTGCTGGCTGCTGCCTCTGGCGACGCGGAGGCGGGGGCGACG
TGGGTGCTTGCGCGAGCGAGCGAATGCGCGAGCGAGCGATGGCGAGGCCG
ACCGTGGTCGAGCTTGGCGGGGATCGCGAGGCTGGGGTAATAATCAAGTG
TGGCAACCTACTGCTGCTGTACACCTTTGGCACGTAACACAAATAACGCT
CAACCCAACCATTAAGTTGTTTGGCATCACTTTTTTGTTTTTTTTTTCAT
CGAGAAAAGTACAACAAAAACTGACAGCATCCTTCTCTAAAATCGATATA
CATTATCGGTCATTGTTGTATTAATCAATAAAGATGCTCTACCATGGTAT
GTAATAACTGTATTTTGCCGGTGATATTTGCTGAGTCCCCCAAGCCCGTT
CGGGGAGGGGCTGGCAGTTGACTCATTACGTAGGGTCGCCCATGCGAGGT
TCAGTTTTGGGAGAATACACGCGGATGCATGCGGTCGTACGTAGCTCTGG
ACTAATATTGCCAAAATCCTAAGCGTGGTTCTAGTGCTAGATTGTCACCC
TCCCCAACCCCAAGTACTCAGGGTGCTTCAAAGGAACCTCCCTTGTAAAC
CGAATAGAAATTAAAGTGTCGTCCCAGCCAGGGTTTTTTTTTGTCTGCCC
CTTCTGCGGCGATAGGCGCACGCGTACCAATCGCGAGGATCGCGTGCTTA
CCGTCACGCTCTCCCTTGGCCCGCCTCACGACCCGCCTACAACCCGTCGC
GCGTTTCGGTGTGCATTCCCCGCGGCAGTCTGAGCATGGCGCCTAGCAGC
GGATCTGCACCGGCGGCGGCACCGGCTTCCACACCGAAGGTGAGTTGCTG
CAATTTTCGCACGATGTTGCTGCTTCGGTTTGTTTCGGGTGCCGTGCGTC
GCAGGCTTCGATCGCAACTGTTGCGGAATATGTTGTTGTAATTGTGTAGT
TCGAGGGGTCGCGCCTGTGTCGATGGTTCGGACGAACGATGCGTTCATGG
TACTGTAGTGGCGGCATGGAGGCGGAAACGCCGAAACGGTGGTGCCGTTT
CTCGGGTTTGGGACGCGTACATACGTGATAGACGTGGGCGTCTTTGAGGC
CCGTCCCTCGTAGCAAGGGGCTCACGACCGACGTTTTTTTTTTCCCGATT
GCAACGAACTGGGTTTCGCTGTTTGTGTCGTGGTTGTAGCTGTATGAGTC
GACCGTGGCCATGCCGAGGTCAAGGCGGTGCCGTCGGCAGCCCTACCTCC
GATGTTCGTTCTCAAGGTGCTCTTTTGGAAGCTTGTCCCTTTCGGGACTG
ATTCCGTTTACGGGACCATTGCCCGCACCTTATGTCGCGTCAAGCAGCTA
CGATAATAACTCGTCAACCACGGCCACGCTTCACCCTTGTCGTGGCGGTA
GAATAAGCGACACTCTCCAGGCTTAGCTCGCACGTGCGACGCACTCGTGT
GTGTATCATAGCCGTCACCGAATTACCAGTGCGCACGACGTTTGGCGCAA
AAACGGGCTCGGTTCGAAAAAGGTCGTGCTTCAAGCCTTACGAAATCGGC
GCACAAAAGGTGTATCCAAAAGATAAAAGAAACAACCTTCAAGCCTCGAG
GGCCCGCAACATGGCACACGATCGCACGGACGTTTTTTTTTTTAAGAAAC
AAATGCCGACTTTTGTGGTTGTGCGGGTTTGCCTTTTCGCTTGCGCCTCG
GCAGGCGGCACCCGCGGCGAAGGAGGACGAGGATGACGATGAGGACGACC
TCTTCGGTGACGACGACGCGGAGGAGGAGGCCAAGCCCACGAAGAGCCGG
GCCGAGCAAATGGCGGAGGCCAAGGCTGCCAAGGACTCCAAGAAGAAGGT
CGACAGGTGTGTGACGGATGGATGGCCTCTACTTGTTTTTCGTGTTGCTA
TGATGTCGTGATCGGAGTGCTGTGAGACCTCCGGCCTCTTGGTTGACAGG
CCGGTGCGTGTTTTCTTCTCAATTTGAGACAAATACCACTGTTAAGATAG
TATGGCTGACGCGTGGTGTGTGTTTTCCCGCATAGGGTGTGTTCGAGCTA
TGCTTGAGTATTGTATGATGGAAGCATTTGGCAGGACCCGTGGTAGGTCA
GGACCGCGAAACGTAAAACTCCGTCGAAGAGTGGCGCCCAGCCAAGCGAG
CTGAGTTCAGCTAGAAATACTTATCCTAGAAGTGAATTCCTGCGCAGTAT
TGCGTAGTAATTGTAGGAGCATTGCGGCAGAGCTCTTGCCACGGGAAAAC
GCTGGCAAAGCAGCGGACGGTCAAGCTTCTTTCGCGTGGTCATGAAAGGG
GCTATAATAGGTATTCATGTCAATTATGCGGCTGCCGAAATAATCGAACG
CTGGTGAGCACGCACCAGATGATGTCGTGAGAGAAGGCATCCCAAGATCC
CCACCTTCCACTCTCTTATTGTGGCCCTACTCCCGATCCCTGTGCCTCCG
ATCCCCCAGGTCCCAGATTGTGTTTGAGGTGAAGCCATGGGAGGCCGAGG
CTGACTTGAAGGGCTTGTTCGAGAAGATCCGAAAGGTACGTGGGTATCTC
TGCACCACCGACCGACCAGGACGGAGCACGCGCTTGGCAACAGCCTGGCT
CTTTTGCGCGAACCGGCGGTAGCGTGCGCAATTTGTGACCCGTCGTTTAT
GGGGCGCCGTGTGATCCGATTCTGCTGTGATAAGAGCAGCCGTTGCGTAA
ACCTAGTGACCACTTGCCCCCCCCCCCCCCCACCCCCTAACAAATACAAT
GCCCCCCCTCCCCGCCCGTCCTCTCGGGGTGTTTTGTTATGGGCCTAGAA
GGCATTTGGGAAGGATTGGTTTGTGCATACGGCTGGGCGCGCATGGTTTA
CAAAAACTAAATTCCACCCGGACGCCCCCTCCGCCGTTACTGCCGCCGCT
GTTTGTTGCGTTTCAAGGTTGTAATCGACGGGCTTGTCTGGGGGGAGGCG
TATAAGCTGCAACCGGTTGCGTTCGGCGTGAAGAAGCTGATTCTCTCTTG
CGTTGTGGTGGATGACAAGGTGAGCCGCGTGTTTATCTCCCGCCCCCCTT
GGTGTTGCCCTGCCAGGACAGGCGCGGAATTATTTTGGGGTTCCCGACCG
GTCACGATCGCGGTTCTTTGCGTCCTGCGCCGTGTATTCACGGCCCCACA
GCTTCTTTCTGCGTGTTGGGTGGCAAACGCGGACGAGCCCCCCTGCCCTC
TGTCTCTGATGACATGCATTTGAAAAATATAATTAGTTGTGGATGGAGCT
GTACAGCTGAGTCAAAGCGGAGGTAAAACACCGCGGCAATCTCGTACCGT
AGCTTTTCAGGTCAACTATTGATTCGCGGGGCGCAATTGTCAAGTGTTTC
CTGGAGCGCGTTGGTGACGAATACCAACAGATACACCGGGTGTCCGTGTT
GGCGAGCGGAGGAAATGTGAGGGACGTTCCCCTTTTCCTACGCCGTTGGC
CAACGAGGATATGCGGCGCAGACGGACTAAGATTCCCCAAGCGGCATCTG
CCGTGTTGTGCGTTTACGAGCGGATATCAAACGTACACCGCGATCCCGCT
AGGTATTTGTTCGCCTCTGTATTGATTACATCCGTCCGCCTGGTAAAGCT
TTTGTTTGTGGGCGTTGGCTATTGCAAACGGCAACTCGCTCGCGGGCTGT
GCGTACAAGCAAAGGAGGTGGCCACGCGCTCCTGCGTCAAAGGAATTAGG
CTTACGCTCACACGCCTTTTGTGCAAAAAAATCTGTGTGCGATGTTTGTG
CGTGCGTGCCTCTCGTTTTTTCGACGCCCGCGGCAGGTCGGTGTTGAGGA
CATCACGGACGCCATCGAGGCTTTCGAAGACGAAGTCCAGTCGGTCGACA
TGACCACGATGAACCGTCTCTAGCTTTCTTTTTTTATCTTCTTCCAGAGG
ATGGGGCGCGCGGTGTCTTTTGATGGGGTTCCGATGTTCAGCCGTTTCGT
TGGGGTGTGTGTGTGTTTGTGCTTCGTTTTGGGTTCTTGGCCTGCTGTTA
CTACCAGAGGGGCACTTCCGGGTTGACACCACCCCCCAAGTCAGCAAGCA
GGCTACATTTAGCCAAGGACATGTGTTTTTTTTTTCCTCTCTGCCGAATG
ACTCCGTTTTGTAGTCAGCGTCAGTCACTCGCCGAAATATTTGTAGCTCG
CCGGTGTGTGGAGGAATGCACCCTTCTTCGATGTATTATATGTGATGTCG
GCTTGCAGCACGAACCAAAAACGACAGTAGGTACGATAGCACAATAAACC
AAAAACGACTCGGGGCGGGCACGCCCCTTTTCTCGAACTCTTGCGCGGTC
TTCGGGCCGTTGCTTTTGATCTCGCTCTACTTTTATTATGGACGCGGTTG
GGTCGGTGTGCGAGGCAAACATGAGTGCCTGCGCGACTCTTTTGGGCGGC
TCAGGGTCGTTGCTATGCACGCATGTATATGATGATGATGGGACTAGGCT
ACTGATGATGTGATGTGCCTTATCAGTTCGTGGCTTCTTCCTGGATACGG
CCTGTGTTTCTTGCGCTGTTTTGTTGCAAGCGAAACTGACGTCCTCCTGG
TGACTTCTGCACCTGGAATGAAAGGCATACATGAGGACACTTTTCTATCG
TGTAGTATACATTATGCCCTACAAACTAATCGACCACAACAAAGGCACCC
CTCAAATCATTGTTACAGTTAACTATCATACGTAACCCTGTTGGGACTCA
GCCTGTGTTCGGAAGTAGGCCATCTGCTTACACCGTATTTCCCATAGAAC
CGTGACCGCACGGTGGCTAATTCTCGCCGTAAGCGGTGGGGCTAAGGTAA
CTGACTGATAAACCTTTCACTCTTAGCTTACATGCACGGTGGTGCCATTG
TGCGTGCCATGTGCACCCGTCGCCGCGATAATATATACCTGTAATACTTG
TA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12376:1113..6764+

>mRNA_S-dermatodea_contig12376.1487.1 ID=mRNA_S-dermatodea_contig12376.1487.1|Name=mRNA_S-dermatodea_contig12376.1487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at S-dermatodea_contig12376:1113..6764+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGCCACCTCCACTGGCGTCCCGGACAAGGCGAAGGCGCCGCACGC
CTACCGCTGGTTCATCCACATCGCCGCCATCAAGGGCGTGCGCAGATGTT
CGCCACCTCCACTGGCGTCCCGGACAAGGCGAAGGCGCCGCACGCCTACC
GCTGGTTCATCCACATCGCCGCCATCAAGGGCGTGCGCAGTCTGAGCATG
GCGCCTAGCAGCGGATCTGCACCGGCGGCGGCACCGGCTTCCACACCGAA
GTCTGAGCATGGCGCCTAGCAGCGGATCTGCACCGGCGGCGGCACCGGCT
TCCACACCGAAGGCGGCACCCGCGGCGAAGGAGGACGAGGATGACGATGA
GGACGACCTCTTCGGTGACGACGACGCGGAGGAGGAGGCCAAGCCCACGA
AGAGCCGGGCCGAGCAAATGGCGGAGGCCAAGGCTGCCAAGGACTCCAAG
AAGAAGGTCGACAGGCGGCACCCGCGGCGAAGGAGGACGAGGATGACGAT
GAGGACGACCTCTTCGGTGACGACGACGCGGAGGAGGAGGCCAAGCCCAC
GAAGAGCCGGGCCGAGCAAATGGCGGAGGCCAAGGCTGCCAAGGACTCCA
AGAAGAAGGTCGACAGGTCCCAGATTGTGTTTGAGGTGAAGCCATGGGAG
GCCGAGGCTGACTTGAAGGGCTTGTTCGAGAAGATCCGAAAGGTCCCAGA
TTGTGTTTGAGGTGAAGCCATGGGAGGCCGAGGCTGACTTGAAGGGCTTG
TTCGAGAAGATCCGAAAGGTTGTAATCGACGGGCTTGTCTGGGGGGAGGC
GTATAAGCTGCAACCGGTTGCGTTCGGCGTGAAGAAGCTGATTCTCTCTT
GCGTTGTGGTGGATGACAAGGTTGTAATCGACGGGCTTGTCTGGGGGGAG
GCGTATAAGCTGCAACCGGTTGCGTTCGGCGTGAAGAAGCTGATTCTCTC
TTGCGTTGTGGTGGATGACAAGGTCGGTGTTGAGGACATCACGGACGCCA
TCGAGGCTTTCGAAGACGAAGTCCAGTCGGTCGACATGACCACGATGAAC
CGTCTCTAGGTCGGTGTTGAGGACATCACGGACGCCATCGAGGCTTTCGA
AGACGAAGTCCAGTCGGTCGACATGACCACGATGAACCGTCTCTAG
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