mRNA_S-dermatodea_contig12275.1426.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12275.1426.1
Unique NamemRNA_S-dermatodea_contig12275.1426.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12275.1426.1 vs. uniprot
Match: A0A6H5JUK4_9PHAE (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUK4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.520e-7
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:  264 MPTASKRCMRFAAAALACNAVCLGFATGLAKAPAQGM 374
            MP AS+RCMRF   ALACNA CLGF TGLAKAP++G+
Sbjct:    1 MPAASQRCMRFTVGALACNAACLGFVTGLAKAPSRGI 37
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12275.1426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUK4_9PHAE2.520e-772.97ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12275contigS-dermatodea_contig12275:4180..4559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size382
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.7323387-UTR-S-dermatodea_contig12275:4179..44421622924240.7323387-UTR-S-dermatodea_contig12275:4179..4442Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12275 4180..4442 +
1694079117.9250572-UTR-S-dermatodea_contig12275:4179..44421694079117.9250572-UTR-S-dermatodea_contig12275:4179..4442Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12275 4180..4442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.746838-CDS-S-dermatodea_contig12275:4442..45591622924240.746838-CDS-S-dermatodea_contig12275:4442..4559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12275 4443..4559 +
1694079117.9333222-CDS-S-dermatodea_contig12275:4442..45591694079117.9333222-CDS-S-dermatodea_contig12275:4442..4559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12275 4443..4559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12275.1426.1prot_S-dermatodea_contig12275.1426.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12275 4443..4559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12275.1426.1

>prot_S-dermatodea_contig12275.1426.1 ID=prot_S-dermatodea_contig12275.1426.1|Name=mRNA_S-dermatodea_contig12275.1426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=39bp
MPTASKRCMRFAAAALACNAVCLGFATGLAKAPAQGMPR
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mRNA from alignment at S-dermatodea_contig12275:4180..4559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12275.1426.1 ID=mRNA_S-dermatodea_contig12275.1426.1|Name=mRNA_S-dermatodea_contig12275.1426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=380bp|location=Sequence derived from alignment at S-dermatodea_contig12275:4180..4559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTCGCATCGCGTGCCAGAGCAGAGCTCACACCACCAGCCGCATAGCG
ACCCAGACACTAGGCCCTGCTGTTCAACCTATCCTGGTATCCAACGCTGC
ACTGCCGACGGTGCCCGCCCAAGAAACGCACCGCGCCCCATTGTGTGTGC
AGGTGTACGTTCTTGAACCGTCGATTCGACCCCATAATACTCCTGCAGTA
GCAGGTTCACCTTGAGAGCGCAGCCAGCCGAGCAGCATCACATTGCACCC
TCACCGAGCAGCCATGCCGACAGCATCCAAGCGATGCATGCGGTTCGCCG
CCGCAGCGCTCGCATGCAACGCTGTCTGCCTCGGCTTCGCCACCGGTCTC
GCCAAGGCGCCGGCTCAGGGCATGCCCCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12275:4180..4559+

>mRNA_S-dermatodea_contig12275.1426.1 ID=mRNA_S-dermatodea_contig12275.1426.1|Name=mRNA_S-dermatodea_contig12275.1426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig12275:4180..4559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGACAGCATCCAAGCGATGCATGCGGTTCGCCGCCGCAGCGCTCGC
ATGCAACGCTGTCTGCCTCGGCTTCGCCACCGGTCTCGCCAAGGCGCCGG
CTCAGGGCATGCCCCGAATGCCGACAGCATCCAAGCGATGCATGCGGTTC
GCCGCCGCAGCGCTCGCATGCAACGCTGTCTGCCTCGGCTTCGCCACCGG
TCTCGCCAAGGCGCCGGCTCAGGGCATGCCCCGA
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