mRNA_S-dermatodea_contig12189.1368.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12189.1368.1
Unique NamemRNA_S-dermatodea_contig12189.1368.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12189.1368.1 vs. uniprot
Match: A0A6H5LPC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPC9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.130e-26
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 FCPGAGLVVVVCFFLSIIACIVCNMKRKERKEFKRRNEPVEGRPKPIQYVDPWGSVARTFQKDGMDDVGSKGSKNVTSNG-SRTANGS 261
            F  GAGLVVVV FFLSI+ACIVC+MKR++RKEFKRRN+  +GRPKP+ YVDPWGSVARTFQKDG        +   +S G SR  NGS
Sbjct:  119 FLVGAGLVVVVSFFLSIVACIVCHMKRRDRKEFKRRNQSEDGRPKPVAYVDPWGSVARTFQKDGAKAPSPSANGGESSRGGSRVGNGS 206
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BLAST of mRNA_S-dermatodea_contig12189.1368.1 vs. uniprot
Match: D8LHQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 6.130e-23
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 FCPGAGLVVVVCFFLSIIACIVCNMKRKERKEFKRRNEPVEGRPKPIQYVDPWGSVARTFQKDGMDDVGSKGSKNVTSNG-SRTANGS 261
            F  GAGLVVVV FFLSI+ACIVC+MKR++RKEFKRRN+  +GRPKP+ YVDPWGSVA TFQKDG        +   +S G SR  NGS
Sbjct: 1085 FLVGAGLVVVVSFFLSIVACIVCHMKRRDRKEFKRRNQGEDGRPKPVAYVDPWGSVATTFQKDGAKAPSPSANGGGSSRGGSRVGNGS 1172
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12189.1368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LPC9_9PHAE4.130e-2665.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ5_ECTSI6.130e-2364.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12189contigS-dermatodea_contig12189:619..4525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size785
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12189.1368.1prot_S-dermatodea_contig12189.1368.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12189 1128..4453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924235.692144-UTR-S-dermatodea_contig12189:618..11271622924235.692144-UTR-S-dermatodea_contig12189:618..1127Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12189 619..1127 -
1694079114.2493448-UTR-S-dermatodea_contig12189:618..11271694079114.2493448-UTR-S-dermatodea_contig12189:618..1127Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12189 619..1127 -
1622924235.7240667-UTR-S-dermatodea_contig12189:4453..45251622924235.7240667-UTR-S-dermatodea_contig12189:4453..4525Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12189 4454..4525 -
1694079114.2824786-UTR-S-dermatodea_contig12189:4453..45251694079114.2824786-UTR-S-dermatodea_contig12189:4453..4525Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12189 4454..4525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924235.7036207-CDS-S-dermatodea_contig12189:1127..12991622924235.7036207-CDS-S-dermatodea_contig12189:1127..1299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12189 1128..1299 -
1694079114.2647595-CDS-S-dermatodea_contig12189:1127..12991694079114.2647595-CDS-S-dermatodea_contig12189:1127..1299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12189 1128..1299 -
1622924235.714216-CDS-S-dermatodea_contig12189:4421..44531622924235.714216-CDS-S-dermatodea_contig12189:4421..4453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12189 4422..4453 -
1694079114.2726984-CDS-S-dermatodea_contig12189:4421..44531694079114.2726984-CDS-S-dermatodea_contig12189:4421..4453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12189 4422..4453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12189.1368.1

>prot_S-dermatodea_contig12189.1368.1 ID=prot_S-dermatodea_contig12189.1368.1|Name=mRNA_S-dermatodea_contig12189.1368.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
MKRKERKEFKRRNEPVEGRPKPIQYVDPWGSVARTFQKDGMDDVGSKGSK
NVTSNGSRTANGSISTA*
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mRNA from alignment at S-dermatodea_contig12189:619..4525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12189.1368.1 ID=mRNA_S-dermatodea_contig12189.1368.1|Name=mRNA_S-dermatodea_contig12189.1368.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3907bp|location=Sequence derived from alignment at S-dermatodea_contig12189:619..4525- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTGTCCAGGTGCTGGCCTGGTGGTGGTAGTATGTTTCTTCCTGAGCAT
CATCGCGTGCATCGTGTGCAACATGAAGCGGAAAGAGCGAAAGGAGTTCA
AGAGGTGCGCGATTTCATTTAAAAAAAAAAAGAAAAAAAATATATTTGAG
CCGGAGCCGCCCAAATTAAACGCACTGTTTTTTTGTTTTGCCCATTTTTT
TTCGAATTTTAGAACCGAAAAAACAAAAACTCACGAAAGCACACTACTGT
AGTAGTACTACTTTTAGTTTCACGTTTTTTCCTTACCAACCAGAGACGGG
CGAGAGTTTGGGTTCTAATGGCGAACTGAAATTCTGTAAACTGCCGATGG
ATGATAGCCAAGACTCATTCACTCTAGCGTCTGGGCCGGCCACCACGGCG
CCACACTTGGCCGCTCGACCTGGCAAAATCGATCGATGTCTGAGAAACTC
GACTCTCGTAAGGATTTCGTTTTTAAAAGCACCGATCCCGGTGCTCTATG
ATAGCCTTGGCCACCGCGAGATGCCCATTTCATTTCTTGTGGCGAACTAC
ACTAGTGCACTATGCGAACCCCTCAAGTGGACCATGGGCAGATAGAGCAT
TGCCGAAGGTCCTGTCTCAATCTGTACTACACAGCAACCCCCAAATCGAT
TTCCGAGAGCTAAAACACTTGGGAAATGTGTACAAAAGGAAGCAGCAAAG
GATTAGGCAAAAAATGCCTTCGAGTCTCGCTGTTTTTCTCGGTCATAATT
CAGCAAGAGAAAACGCCCCTGTAGCGCCCCCCCCCCCCCTCCTTTAACAT
TGGATTGTTGGAACACCCTAGAGCAAGCATTGACTTACGAATGGTACAAG
TACTCCGCCAGGAGTACTCATGAGCAGATTCTAGTCCGAGTGTATCACAT
ATATACATACGTCGTGTTTACTGTGTGCGTGCGGTGCTTTTGCATTCGCA
CGGCGATCAAGGTTCCTTTGCGGTACTTGGGAGTATAGTCACGCCTACTG
AATGTGCAACATTTATTTGGTTACCCGGTGTGTCCAATCAACCCCATGGC
ATATCGTTTGGCGTCACAAACGCAAGGATGATGACCAGCAGCTGGTATCA
TCCCCGTGAACCGCAGCATGGCCGGCGAACCGAAAACCCGGCATATCGCT
CCGTCCCGGCATTGCTGGGACGGGGTTCGTGGCCTATGTCCGCATGGATA
CGTCGGTTTTGCCCACATATGACAGGCTTGCTTTTCCGAGGTAGGCCCGT
CTGTGGTCACAAGGGATCACCCCATCTCTCTTATCTTATCCCCGGTATGT
TCTCACCTTTGCTTTTTATCGCGAATGCATTGGGTTAGTTCGGCACTCCC
TCCCCCAGCTCTATAGCCGATTTATCGGATTTTTTGCTTACTCACGCTCT
CACGATTTGCACTTGCAAAAATATTGACCGATCCCGCTCGTGGCGACATA
CATGTGAAGGGATCAGAGCAAGCGGGATCGATCCAGCACCCCTACACCGA
ACAAAAGAAAGTGATTGCCAGACATGACAGATATAAAACCCGCACGCCGC
CCGGCGGAGCGCCTAACCCCCCCCCTGATTCGCTTTGTACCCGTGGAAGA
GTTAACACGCATTGCATAATAAGTGATTTCCCTGCCCCGAACCGAGTGAT
ACGCATCCCTGGCAGAACTACGGTACTCTGTGGTGCATCTCTCGCCTGAA
GCCGTCGTGCCCAAAACTAAAAACTCTCGAAAGGTGTAAATGTATATACA
GGTACACAGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAC
CAAAAAACACAACCAAAAAAAAAAATAAAAGGGAAACAAAAAAAAACAAA
CAAAAAAAACNNNNNNNNNNCCCAGAAGCCCTCGTCACCAAAAAAAAAAA
CACTAAAAAGTAAAAAAAAAAAATAAAGAAACACAATAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAGTAAATAGGACCAAATATCACGACCATAAATCA
GGATTACGGGGGACCATAGTCAACAGGTCCAAATTTGCCACTAGTCTCAA
CCCTAGAAAAATCAAAATAGAACCCTATAATAGTTAACACGTCCAAATTT
GCTAAACACAAGTCTCAACCTAGAAAAATAAAAAGAGGCCGGAATTATTC
TATCGAGATTTCAAGGTCGATGTTCATGAATATGGCCATAATCTCGTGTT
TTTTGTTGTTCATGAGGTTTTTGTTGGTTTTTGGGTATTCATGGCATTAA
TATTAGTATTAATAGGGTATTATTGGCCATGATATTTGGACCTGTTAACT
ACGTTCCTCCGTAAATATTCCGACCATGAATACAGGACCCAAACAACCGC
AAAAGTATCGTAAAAAGAAAGAAAAACACGAGATATGGCCTAAATACAAG
AACATCGACCATGAAATCTCGGTAAAATTCCAGCCTATTTTTGTTTACCT
AGGTTCTGCTTGTGGCAAATTTGGACCTGTTTACTATGGTCCTCCTTAAT
AGTGTAATATATTTTGATTTGATTTTGATTTTGATTTGATTTGCACACGT
ATAGCCGATCACTTAATCCGACCCGACTTGTGGTCAGACACGCAAAGAGT
CGAGGAGAAACATAACTAATCATAATTCTACTTCTACTATACACCGTACC
GCCCCTGGTACTTACTCTATAGCACGCCAGATATAGAGAAAATCATGCTT
CGTATTATTTAATAGAACTGTACACGTATGTCCCGTGTACCTTTACGAGT
GCACACCAGCGATAGGAGTGGATTACGATTGTACCCGTGTGCATTATTAT
AGTACAATCAGCGATTGTATCATATGTACCGAATTCAAGGGCACACGTGT
AGGCTGAGTACCTCATTATATACCCCTACCCCAAATTACACGTACGCTTA
AGGGTATGTAGGCTGTGTACCTGATTTGTGTTCCCCTGCCTCAGATTACA
CATGTACACTCATGTGTATGTAGGCTGTGTACCTGATTTGTGTAACCCTG
CCCCAAATTACACAGGTACACTTATGTGTATGTAGGCTGTGTACCTGATT
TGTGTACCCCTGCCCCAGATTACACAGGTACACTCATGTGTATGTAGGCT
GTGTACCTGATTTGTGTACCCCTGCCCCAAATTACACATACACGTACACT
TACACACGAGCTACACTACTGCAATCTCCACCTTTGAACACTTTCTAACG
CTCCCACCACTGCCTACCCTTGACAGGAGAAACGAGCCCGTCGAGGGGCG
ACCCAAGCCCATCCAGTACGTTGACCCCTGGGGGTCCGTGGCGCGAACGT
TTCAGAAGGACGGGATGGACGATGTAGGGTCGAAGGGGTCCAAGAACGTA
ACGTCCAACGGCTCTCGAACGGCCAACGGCTCGATCTCGACAGCATGATA
AAAAGCGAAACGCAACGAAAAGAAGCGAAACGAAGCGAAACAGAACGAGG
AAGGGGGGAAGGAAGGGGCGGCGTCATCGGTGCCGGTTGGAGTGAGACGT
GGCCCGTGGCCCTCCCGGACTGGGCTTAAGTTCGGGTAGCCCATCGTAAC
GTTTCTGTTTTATTTTCGGCCCGGTCCGTTGGTTCGCGCGGCGAGGGTAA
GTACCCGGTTCGGTTTGGCTCGAATTCGGATTCGAGTACATGTTCGGATT
GGGGCACTTGTTCGGATTCGAGTACGTTTTCGGATTTGGGGTATGTCTTC
GGATTCATTCGGGTGCATGTTCGGATTGGGGGCAGTTGGGTTCGGATTCG
AGTACGGCTTCGGATTAGGACATGTGTTTGGATTCGGTACTTAATTCGGA
TTCGGGTACGTGGTTGGATTGGGGTATTTGCTCGTATTGGGGTACTTGAT
CGGATTCGGGTGCTTGTCTGGATTCGGTACTAGTTCGGATTTGGGGACCT
GTGCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12189:619..4525-

>mRNA_S-dermatodea_contig12189.1368.1 ID=mRNA_S-dermatodea_contig12189.1368.1|Name=mRNA_S-dermatodea_contig12189.1368.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig12189:619..4525- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCGGAAAGAGCGAAAGGAGTTCAAGAGATGAAGCGGAAAGAGCGA
AAGGAGTTCAAGAGGAGAAACGAGCCCGTCGAGGGGCGACCCAAGCCCAT
CCAGTACGTTGACCCCTGGGGGTCCGTGGCGCGAACGTTTCAGAAGGACG
GGATGGACGATGTAGGGTCGAAGGGGTCCAAGAACGTAACGTCCAACGGC
TCTCGAACGGCCAACGGCTCGATCTCGACAGCATGAGAGAAACGAGCCCG
TCGAGGGGCGACCCAAGCCCATCCAGTACGTTGACCCCTGGGGGTCCGTG
GCGCGAACGTTTCAGAAGGACGGGATGGACGATGTAGGGTCGAAGGGGTC
CAAGAACGTAACGTCCAACGGCTCTCGAACGGCCAACGGCTCGATCTCGA
CAGCATGA
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