mRNA_S-dermatodea_contig12165.1350.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12165.1350.1
Unique NamemRNA_S-dermatodea_contig12165.1350.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12165.1350.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.200e-47
Identity = 122/152 (80.26%), Postives = 135/152 (88.82%), Query Frame = 1 
Query:    1 TKLALEDALDSTTLGDLWFERGELREARHEHLRALKIRATRLRPGHPDVAESLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVALKGQLGKLPEAEAVCAHALTIVEKKEAEGEKTPHLMVALLKLQSKIIKRQG 456
            +K AL DALDST LGDLWFERGEL+EAR+EHLRAL+IR+ RL PGHPD+AESLESL      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAV+LKGQ GKLPEAEAVCAHA++IVE  +++G  TPHLM ALLKLQSKI+KRQG
Sbjct:  119 SKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQG 270
[Close]
BLAST of mRNA_S-dermatodea_contig12165.1350.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.900e-42
Identity = 115/152 (75.66%), Postives = 128/152 (84.21%), Query Frame = 1 
Query:    1 TKLALEDALDSTTLGDLWFERGELREARHEHLRALKIRATRLRPGHPDVAESLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVALKGQLGKLPEAEAVCAHALTIVEKKEAEGEKTPHLMVALLKLQSKIIKRQG 456
            +K AL DALDST  GD WFERGEL+EAR+EHLRAL+IR+ RL PGHPD+AESLESL           XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAV+LKGQ GKL EAEAVCAHA++IVE K+++G  TPHLM ALLKLQSKI+KRQG
Sbjct: 1564 SKTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIREGNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLSEAEAVCAHAMSIVEVKDSQGHNTPHLMAALLKLQSKILKRQG 1715
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12165.1350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK1_ECTSI1.200e-4780.26Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JQC7_9PHAE2.900e-4275.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12165contigS-dermatodea_contig12165:4122..7098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue8.5e-39
Seed eggNOG ortholog2880.D8LCK1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-03_002600.1
Exons3
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12165.1350.1prot_S-dermatodea_contig12165.1350.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12165 4122..7098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.3180454-CDS-S-dermatodea_contig12165:4121..43101622924234.3180454-CDS-S-dermatodea_contig12165:4121..4310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12165 4122..4310 +
1694079113.234737-CDS-S-dermatodea_contig12165:4121..43101694079113.234737-CDS-S-dermatodea_contig12165:4121..4310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12165 4122..4310 +
1622924234.3312497-CDS-S-dermatodea_contig12165:5928..60581622924234.3312497-CDS-S-dermatodea_contig12165:5928..6058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12165 5929..6058 +
1694079113.2445688-CDS-S-dermatodea_contig12165:5928..60581694079113.2445688-CDS-S-dermatodea_contig12165:5928..6058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12165 5929..6058 +
1622924234.3407497-CDS-S-dermatodea_contig12165:6931..70981622924234.3407497-CDS-S-dermatodea_contig12165:6931..7098Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12165 6932..7098 +
1694079113.2527428-CDS-S-dermatodea_contig12165:6931..70981694079113.2527428-CDS-S-dermatodea_contig12165:6931..7098Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12165 6932..7098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12165.1350.1

>prot_S-dermatodea_contig12165.1350.1 ID=prot_S-dermatodea_contig12165.1350.1|Name=mRNA_S-dermatodea_contig12165.1350.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
TKLALEDALDSTTLGDLWFERGELREARHEHLRALKIRATRLRPGHPDVA
ESLESLGNVAIREGNHLEAEGLHRKALEMRMRELGPGHMDVAATLNNLAV
ALKGQLGKLPEAEAVCAHALTIVEKKEAEGEKTPHLMVALLKLQSKIIKR
QGELCVDWSID*
back to top

mRNA from alignment at S-dermatodea_contig12165:4122..7098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12165.1350.1 ID=mRNA_S-dermatodea_contig12165.1350.1|Name=mRNA_S-dermatodea_contig12165.1350.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2977bp|location=Sequence derived from alignment at S-dermatodea_contig12165:4122..7098+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCAAGCTCGCCCTCGAAGACGCCCTCGACAGCACAACGCTCGGCGACCT
CTGGTTCGAGCGCGGGGAGCTGAGGGAAGCTCGCCACGAACACTTGCGGG
CGCTCAAGATCCGCGCGACGAGGCTACGGCCGGGCCACCCGGACGTCGCC
GAGAGCCTGGAGAGCTTGGGTAACGTGGCCATTCGCGAGGTGTGTGTGTG
CGTGTTGGCTATGTTGGCCGTGTTGACTGGTTTTTGTTTGTATTGATCTT
GTTGGCTCTTTGCCTATCTGACCACAAGTCGGGTCGGATTAAGCCGATCG
GCTATACGTGTGCAAATCCATCAATCTAAAAATCTAGTGTTGAATTTATA
GCGCTGTAAACGATGTTTGGTGTACTGCTGTATGAGAGCGATTTATGAAG
AGTTAGCCCCTTGATGCCAAATGGATCGGGCTTTTTTTGAGTTGAAGAAC
CTTTACTTTAATGCCGATTTTACCTATGCAATTATTGATGCCGAATTTCC
TATACAATTCGTGATGCCAGGTATTATAGGGATTTTAGAGTGGTACCTTA
CAGAGCAGGAAATTGTGCCAACGCACACTTCTCGGTCATAGCCGTGGCCG
ATGTACCCACTATTTTTAGTATAACTACTGTATTAATAGTAGGTAGCCAC
GGCTACTCCCGTGAGGCGAAAAATCCTACCACTATTTTCAAGACTTGGCG
CTCAACACAAACATCAAGTTGTTTTGCATCACTTTTTCATATAGGATTCC
GGCCTCACAGCACCATTCTCTAAAATCGCGCACTAATAATAGTGGGTAGC
CACGGCTATGCCCGTGAGGCAAAAAATACTACATTTTTCAACACTTGGCG
CTCAACACAAACATCAAGTTTTTTTGCATCACTTGTTCATATAGGATTCC
GGCCTCACAATACCATTATCTAAATTCGTTGTTAAGCATCGGTCAAAGTG
CTACTAATACTACGCCCGTGTGAGGTGTGCGTTGGCAGGACGATATGCCG
ACGGAACGCGACACGGAGGTCGAACGCGGTTGCGCTACTGTGCGCGCCGC
TGCTGTGCGTGTCGCTGCTGCTGTGTTTTCGCTTTTATAAAAAAAAATGG
CTCAACACAAAAATCAAGTTGTTTGGCATTAGGCAGCATCCTTGTCTAAA
ATCAATATACACGATCGGTCATTGTGACATTAATTAATAATATACTTTAC
GGAGGAACGTAGTTAACTTTAACAGGTCCAAATATCAAATATCATGGCCA
ATAATACCCAACTTTTCCTATAAATACTGTATAATATACCCAAACAACAA
CAAATATATCATGAACAAAAAAAATACGAGAAGATTATGGCCATATTCAT
GGAACATCGATCGACCTTGAAATCTCGATAATTCCGGCCTGTTTTGTTTT
TTCTGGGTTGAGACTTGTGCTTAGCAAATTTGGACCTGTTAAAGTTAACT
ATGGTATAATCCCCCGTAAAAGTTGCAAGCCACGGCTGTCGCCCGTGAGG
TGTGCGTTGGCAGGACGATGTGCGGGTTAGGTTTGGAGGATACGGTGTGG
CGATCCACGGCAGGCGTATCGCTATGAATCACTATTAAAAATAGTTCACT
GTGGTGCATTTGAAAATGTAAATCGTATCGGATGTAGTTTACCCAATCGG
GCCTCAGTGTACGGCTGTGGGCTACACTGAAATCAGTATGACAACTCATC
GGCGTAGGCCTCAAGTCATAACTTAAGATATATGTATATATATATACATA
TTTAACTCAAGACGATGCTAATCTTGTTGTGACTGTTGTTGACGTTGGCC
GCCGCAGGGCAACCACCTAGAGGCCGAAGGCCTGCACAGAAAGGCGCTCG
AGATGCGAATGAGAGAGCTCGGACCCGGCCACATGGACGTCGCCGCCACG
CTCAACAATCTCGCCGTCGCCCTCAAGGGGCAGCTCGGTGAGGATCACTT
CCCCCTCCCTCCTTGAAAATAAAAATGGGAAATGCTGGTACCATCCTGGG
CCAAGGAGAGATGATCCCTTGTATAATAGTGACTACAGGCGGGGTTCGGA
AAAATGCGTTCCGTCATGTATATATCATATAAATCATGTGTGTGACAAAG
CAAAAAAAAAAATTGAGTGCAAATCAATCAATCATCCAATCAAAACGGTG
TATGTATGTATACACGGTGATTTTCTTGGATTCAGCGGAGACCTCGTGAC
CGGCAGATTGTTGATTTGATTGATTTGATTTGATTTGATTTGATTTGCAC
ACGTATAGCTGATCGGCTTAATCCGACGTATCCGACTTGTGGTCAGACAC
GCAAAGGATATGCGTGTCGTTAAATATTAAAACAGGACCTTCATCCACCT
GGGTCCTGTCCTGTCCCGATGAGTTATGGATTATACATACACTTTCTGTG
TCCTGTTTCTTTGTAAAAAAACAGGACCTTCACATGCCCGGCGCTGTTTG
TTGCACATGTGTTTTCACGGTACCATTGCCAGAACTGCTTTTCGGTTACA
TGACCGGCACTGCTGTCAAGAATATCAATGGATACAACCGGCGCAGTTTC
GGCACTGTCATTTTTATTTGCTTATTAGCCGGCACTGGATATGTGTGTAA
CTCTAAATAGAAGCCATGCGTGGTTCCCATGTAGGACATGTGAAAAAAAA
AACATGTGAGAAGAAAACATGTGAAAAAAAACATGCGAAAAGACACGATG
TGCGTAAGTTAATATTTTTGGTCTTCAGCGGGATTTTGAAATACGTTATG
CTCCTGCGTGTGTGTGTATCTGTATGTGTGTGTGTGTGTGCTTTTTTTTT
TTTTTTTCAGGAAAACTTCCGGAGGCGGAGGCTGTGTGCGCGCACGCACT
GACGATCGTGGAGAAAAAAGAGGCGGAAGGGGAAAAGACGCCGCACCTTA
TGGTAGCCTTGCTCAAGCTACAGAGTAAGATTATCAAGCGCCAAGGTGAG
TTGTGCGTTGATTGGTCGATTGATTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12165:4122..7098+

>mRNA_S-dermatodea_contig12165.1350.1 ID=mRNA_S-dermatodea_contig12165.1350.1|Name=mRNA_S-dermatodea_contig12165.1350.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig12165:4122..7098+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCAAGCTCGCCCTCGAAGACGCCCTCGACAGCACAACGCTCGGCGACCT
CTGGTTCGAGCGCGGGGAGCTGAGGGAAGCTCGCCACGAACACTTGCGGG
CGCTCAAGATCCGCGCGACGAGGCTACGGCCGGGCCACCCGGACGTCGCC
GAGAGCCTGGAGAGCTTGGGTAACGTGGCCATTCGCGAGACCAAGCTCGC
CCTCGAAGACGCCCTCGACAGCACAACGCTCGGCGACCTCTGGTTCGAGC
GCGGGGAGCTGAGGGAAGCTCGCCACGAACACTTGCGGGCGCTCAAGATC
CGCGCGACGAGGCTACGGCCGGGCCACCCGGACGTCGCCGAGAGCCTGGA
GAGCTTGGGTAACGTGGCCATTCGCGAGGGCAACCACCTAGAGGCCGAAG
GCCTGCACAGAAAGGCGCTCGAGATGCGAATGAGAGAGCTCGGACCCGGC
CACATGGACGTCGCCGCCACGCTCAACAATCTCGCCGTCGCCCTCAAGGG
GCAGCTCGGGCAACCACCTAGAGGCCGAAGGCCTGCACAGAAAGGCGCTC
GAGATGCGAATGAGAGAGCTCGGACCCGGCCACATGGACGTCGCCGCCAC
GCTCAACAATCTCGCCGTCGCCCTCAAGGGGCAGCTCGGAAAACTTCCGG
AGGCGGAGGCTGTGTGCGCGCACGCACTGACGATCGTGGAGAAAAAAGAG
GCGGAAGGGGAAAAGACGCCGCACCTTATGGTAGCCTTGCTCAAGCTACA
GAGTAAGATTATCAAGCGCCAAGGTGAGTTGTGCGTTGATTGGTCGATTG
ATTGAGAAAACTTCCGGAGGCGGAGGCTGTGTGCGCGCACGCACTGACGA
TCGTGGAGAAAAAAGAGGCGGAAGGGGAAAAGACGCCGCACCTTATGGTA
GCCTTGCTCAAGCTACAGAGTAAGATTATCAAGCGCCAAGGTGAGTTGTG
CGTTGATTGGTCGATTGATTGA
back to top