mRNA_S-dermatodea_contig12159.1345.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12159.1345.1
Unique NamemRNA_S-dermatodea_contig12159.1345.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12159.1345.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 5.630e-34
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:  496 GITLWLDMRTAVLPAAQTLQTLYDDLRQRELALGRTPEDPDWTLKRVPNPVGALLFAPEPEGRAADESNALG---GALQCYELNGESDR--VLEVPSGDFIGFGFDPV 804
            G+ LWLDMRTAVLPAAQTL+TLY +LRQRE ALGR+PED DWTL RVPNPVGALL+A EPE RAA+E  ALG    AL C+ L G      V++V SG  +G   DPV
Sbjct:  104 GVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDPV 211
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12159.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI5.630e-3464.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12159contigS-dermatodea_contig12159:3588..4772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003160.1
Exons2
Model size831
Cds size828
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924233.9227862-CDS-S-dermatodea_contig12159:3588..43691622924233.9227862-CDS-S-dermatodea_contig12159:3588..4369Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12159 3589..4369 -
1694079112.961804-CDS-S-dermatodea_contig12159:3588..43691694079112.961804-CDS-S-dermatodea_contig12159:3588..4369Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12159 3589..4369 -
1622924233.935978-CDS-S-dermatodea_contig12159:4725..47721622924233.935978-CDS-S-dermatodea_contig12159:4725..4772Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12159 4726..4772 -
1694079112.9722786-CDS-S-dermatodea_contig12159:4725..47721694079112.9722786-CDS-S-dermatodea_contig12159:4725..4772Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12159 4726..4772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12159.1345.1prot_S-dermatodea_contig12159.1345.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12159 3589..4772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12159.1345.1

>prot_S-dermatodea_contig12159.1345.1 ID=prot_S-dermatodea_contig12159.1345.1|Name=mRNA_S-dermatodea_contig12159.1345.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=276bp
ERRLLGGQREGNRGSGSPALDPREWRTSYTRKVSPLSPLSHMRVNAWPTA
TGLLATAAQTTHQPWRSWFSLPRDGGDLNYARGGPPRQPHQPSTTGAAFA
FLPPRTPAPSPPSRQAAGRSNRGSTSPPPSSSLAHALKRALRVHSMSGSS
SVISAGEGDSLGGAGGITLWLDMRTAVLPAAQTLQTLYDDLRQRELALGR
TPEDPDWTLKRVPNPVGALLFAPEPEGRAADESNALGGALQCYELNGESD
RVLEVPSGDFIGFGFDPVAGGGGPGA
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mRNA from alignment at S-dermatodea_contig12159:3588..4772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12159.1345.1 ID=mRNA_S-dermatodea_contig12159.1345.1|Name=mRNA_S-dermatodea_contig12159.1345.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1185bp|location=Sequence derived from alignment at S-dermatodea_contig12159:3588..4772- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAGGCGGCTACTCGGAGGTCAGAGGGAAGGGAATAGAGGATCTGGGTG
AGTGAAGTTGGTGGCGCAAGCATGGGGGTTGCCGGATATCACAGTGCGTG
GTTCAATTTTAGCGTTTGTGAAAGCCGTCAAAGCACGCGAGGAAACACCT
CATCATCATGAAACATGAAAAATCACTCAATGGCTACAAGTACAGATCGA
TGCCTCCTGTTGGACACGTCACGTCGAAAAGTACCCACCGTGTGGCATAC
TCACGAATGCTCCTTGCCCACGGTGCTTGCGCCGTTCCCGCGAGTGTTGG
GTGCTTGCTTCAGCAGCTAGACCCTCCCCTGCGTTGGAAACATGTCGCGA
ACCCTAACCCACGAATTGCAAACCAAACTCATCTTATTGTTCGCATGCCA
CAGATCACCCGCCCTCGACCCTCGAGAGTGGAGAACGTCCTATACCCGGA
AGGTATCCCCCCTCAGCCCTCTTTCTCACATGAGAGTGAACGCGTGGCCG
ACTGCCACCGGCCTCCTGGCCACGGCCGCCCAGACGACCCATCAACCATG
GAGATCGTGGTTCAGCTTGCCCCGGGACGGGGGCGACCTGAACTATGCAC
GCGGAGGGCCACCACGTCAGCCGCACCAGCCGTCGACCACAGGTGCAGCC
TTCGCCTTTCTCCCGCCTCGAACGCCTGCGCCATCCCCGCCCTCGAGGCA
AGCCGCTGGCCGCTCAAACCGCGGAAGCACATCGCCACCGCCATCTTCAT
CCCTTGCTCACGCCCTAAAACGCGCGCTTCGGGTGCATTCCATGAGCGGG
AGTAGTAGTGTAATCTCCGCCGGCGAGGGTGACAGCCTGGGCGGAGCGGG
AGGCATCACCCTGTGGCTAGACATGCGAACCGCGGTCCTCCCCGCCGCGC
AGACTCTCCAGACCCTTTACGACGACCTTCGGCAGAGAGAATTGGCTCTC
GGGCGCACTCCGGAAGATCCAGATTGGACCCTGAAGCGCGTCCCCAACCC
CGTGGGCGCGCTGCTGTTCGCACCCGAGCCGGAGGGAAGAGCGGCGGACG
AGTCGAACGCGCTAGGTGGAGCCCTTCAGTGCTACGAGTTGAACGGGGAG
AGCGATCGAGTGTTGGAAGTTCCGAGCGGGGACTTTATCGGTTTTGGCTT
CGACCCCGTAGCGGGCGGGGGCGGGCCGGGCGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12159:3588..4772-

>mRNA_S-dermatodea_contig12159.1345.1 ID=mRNA_S-dermatodea_contig12159.1345.1|Name=mRNA_S-dermatodea_contig12159.1345.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at S-dermatodea_contig12159:3588..4772- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAGGCGGCTACTCGGAGGTCAGAGGGAAGGGAATAGAGGATCTGGGAG
AGGCGGCTACTCGGAGGTCAGAGGGAAGGGAATAGAGGATCTGGATCACC
CGCCCTCGACCCTCGAGAGTGGAGAACGTCCTATACCCGGAAGGTATCCC
CCCTCAGCCCTCTTTCTCACATGAGAGTGAACGCGTGGCCGACTGCCACC
GGCCTCCTGGCCACGGCCGCCCAGACGACCCATCAACCATGGAGATCGTG
GTTCAGCTTGCCCCGGGACGGGGGCGACCTGAACTATGCACGCGGAGGGC
CACCACGTCAGCCGCACCAGCCGTCGACCACAGGTGCAGCCTTCGCCTTT
CTCCCGCCTCGAACGCCTGCGCCATCCCCGCCCTCGAGGCAAGCCGCTGG
CCGCTCAAACCGCGGAAGCACATCGCCACCGCCATCTTCATCCCTTGCTC
ACGCCCTAAAACGCGCGCTTCGGGTGCATTCCATGAGCGGGAGTAGTAGT
GTAATCTCCGCCGGCGAGGGTGACAGCCTGGGCGGAGCGGGAGGCATCAC
CCTGTGGCTAGACATGCGAACCGCGGTCCTCCCCGCCGCGCAGACTCTCC
AGACCCTTTACGACGACCTTCGGCAGAGAGAATTGGCTCTCGGGCGCACT
CCGGAAGATCCAGATTGGACCCTGAAGCGCGTCCCCAACCCCGTGGGCGC
GCTGCTGTTCGCACCCGAGCCGGAGGGAAGAGCGGCGGACGAGTCGAACG
CGCTAGGTGGAGCCCTTCAGTGCTACGAGTTGAACGGGGAGAGCGATCGA
GTGTTGGAAGTTCCGAGCGGGGACTTTATCGGTTTTGGCTTCGACCCCGT
AGCGGGCGGGGGCGGGCCGGGCGCGATCACCCGCCCTCGACCCTCGAGAG
TGGAGAACGTCCTATACCCGGAAGGTATCCCCCCTCAGCCCTCTTTCTCA
CATGAGAGTGAACGCGTGGCCGACTGCCACCGGCCTCCTGGCCACGGCCG
CCCAGACGACCCATCAACCATGGAGATCGTGGTTCAGCTTGCCCCGGGAC
GGGGGCGACCTGAACTATGCACGCGGAGGGCCACCACGTCAGCCGCACCA
GCCGTCGACCACAGGTGCAGCCTTCGCCTTTCTCCCGCCTCGAACGCCTG
CGCCATCCCCGCCCTCGAGGCAAGCCGCTGGCCGCTCAAACCGCGGAAGC
ACATCGCCACCGCCATCTTCATCCCTTGCTCACGCCCTAAAACGCGCGCT
TCGGGTGCATTCCATGAGCGGGAGTAGTAGTGTAATCTCCGCCGGCGAGG
GTGACAGCCTGGGCGGAGCGGGAGGCATCACCCTGTGGCTAGACATGCGA
ACCGCGGTCCTCCCCGCCGCGCAGACTCTCCAGACCCTTTACGACGACCT
TCGGCAGAGAGAATTGGCTCTCGGGCGCACTCCGGAAGATCCAGATTGGA
CCCTGAAGCGCGTCCCCAACCCCGTGGGCGCGCTGCTGTTCGCACCCGAG
CCGGAGGGAAGAGCGGCGGACGAGTCGAACGCGCTAGGTGGAGCCCTTCA
GTGCTACGAGTTGAACGGGGAGAGCGATCGAGTGTTGGAAGTTCCGAGCG
GGGACTTTATCGGTTTTGGCTTCGACCCCGTAGCGGGCGGGGGCGGGCCG
GGCGCG
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