mRNA_S-dermatodea_contig12133.1329.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12133.1329.1
Unique NamemRNA_S-dermatodea_contig12133.1329.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JGN7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.730e-26
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 2
Query:  383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
            ++S    +  + K+ E NARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+T P  +   D   ++LI+ACG    +S TP VGLGGL PP P      L+L  +DF D R
Sbjct:  317 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIRACGRNHRSSSTPEVGLGGLRPPYPGGVFSPLALQPSDFGDFR 437          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5L3E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.260e-24
Identity = 63/118 (53.39%), Postives = 79/118 (66.95%), Query Frame = 2
Query:  416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVV-IYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIRLRESQMS 766
            AK+ E NARVQRWLE L+AY ++LEYRKGS NGNA FLSRL + A +SDR+   RLT  DD   ++ I++CGLT S     GVGLGG +P  P    GGL+ + ADF D R    ++S
Sbjct:  256 AKVGENNARVQRWLELLTAYNYSLEYRKGSPNGNADFLSRLPIDAAESDRSGRSRLTPDDDEEGVFFIRSCGLTPSGHRAVGVGLGGHVPKTPASVLGGLAPSTADFVDFRRHGPRLS 373          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.700e-24
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 2
Query:  416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLT-EPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
            AK+ E NARVQRWLEFL+AY +TLEYRKGSANGNA FLSRL + A + DR+   RLT + D+  +  I++CGLT S     GVGLGGL+P  P    GGL+ +  DF D R
Sbjct:  652 AKVGENNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRSGRSRLTPDGDEEGVSFIRSCGLTPSVHRAVGVGLGGLVPTSPTSVLGGLAPSTDDFIDFR 762          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KAD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.760e-24
Identity = 63/111 (56.76%), Postives = 76/111 (68.47%), Query Frame = 2
Query:  416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVV-IYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
            AK+   NARVQRWLEFL+AY +TLEYRKGSANGNA FLSRL + A + DR+   RLT  DD   ++ I++CGLT S     GVGLGGL+P  P    GGL+ +  DF D R
Sbjct:  187 AKVGGNNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRSGRSRLTPDDDEEGVFFIRSCGLTPSGHRAVGVGLGGLVPTSPTSVLGGLAPSTDDFIDFR 297          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JDY1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.460e-24
Identity = 62/121 (51.24%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
            ++S    +  + K+ ERNARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+T P  +   D   ++LI ACG    +S TP VGLGGL PP         +L  +DF D R
Sbjct:  413 IYSDHEALESIGKVGERNARVQRWLEFLSNFDYTLKYRKGSANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFGDFR 533          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KHG2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.330e-23
Identity = 61/121 (50.41%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
            ++S    +  + K+ E NARVQRWLEFLS + +TL+YRKGSANGNA FL RL LPA D+D+T PY +   D   ++LI ACG    +S TP VGLGGL PP         +L  +DF D R
Sbjct:  545 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLPRLPLPAQDTDKTGPYGIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFRDFR 665          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JPT7_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.970e-23
Identity = 60/121 (49.59%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
            ++S    +  + K+ E NARVQRWLEFLS + +TL+YR+GSANGNA FLSRL LPA D+D T P  +   D   ++LI ACG    +S TP VGLGGL PP         +L  +DF D R
Sbjct:  207 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRQGSANGNADFLSRLPLPAQDTDETGPDCIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFGDFR 327          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KTG7_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.250e-23
Identity = 70/159 (44.03%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIRLRESQMSIDDLDTC--SQVYPVRVYNSVSIISEGPRAA 853
            ++S    +  + K+RE NARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+  P  +   D   ++LI AC     +S TP VGLGGL PP         +L  +D  D RL       D   TC  SQ  P     S  + S GP ++
Sbjct:  209 IYSDHKALESIGKVREHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRLPLPAQDTDKIGPDCIDGVDQAGVFLIWACRRNYHSSCTPEVGLGGLRPPCTAGVFSPPALQPSDLGDFRL---DALTDSKITCENSQRSPGVFIVSPVLTSSGPASS 364          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KKX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.480e-23
Identity = 61/121 (50.41%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
            ++S    +  + K+ E NARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+T P  +   D   ++LI ACG    +S TP VGLGGL PP         +L  +DF D R
Sbjct:  648 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFGDFR 768          
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JL71_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL71_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.670e-23
Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = 2
Query:  416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLT-EPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIRLRESQMSIDDLDTCSQVYPVRVYNS 820
            AK+RE NARVQRWLEFL+AY +TL+YRKGSAN NA FLSRL +   + DR+   +LT + DD  ++ I++CGL  S     GVGLGGL+P  P    GGL+    DF D R    ++S   L     ++ +  + S
Sbjct:  445 AKVRENNARVQRWLEFLTAYNYTLKYRKGSANCNADFLSRLPIDEAECDRSGRSQLTPDDDDEGVFFIRSCGLMPSGHRAVGVGLGGLVPTSPTSVLGGLAPITDDFIDFRRHGPRLSPSGLSFSPGIWNIAPWPS 580          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGN7_9PHAE8.730e-2652.07Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L3E2_9PHAE1.260e-2453.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ4_9PHAE1.700e-2456.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAD8_9PHAE1.760e-2456.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDY1_9PHAE6.460e-2451.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KHG2_9PHAE1.330e-2350.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JPT7_9PHAE2.970e-2349.59RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5KTG7_9PHAE4.250e-2344.03RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5KKX5_9PHAE5.480e-2350.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JL71_9PHAE5.670e-2346.32Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12133contigS-dermatodea_contig12133:576..1545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size970
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12133.1329.1prot_S-dermatodea_contig12133.1329.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12133 988..1491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.7779768-UTR-S-dermatodea_contig12133:575..9871622924232.7779768-UTR-S-dermatodea_contig12133:575..987Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12133 576..987 +
1694079112.1595893-UTR-S-dermatodea_contig12133:575..9871694079112.1595893-UTR-S-dermatodea_contig12133:575..987Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12133 576..987 +
1622924232.8054786-UTR-S-dermatodea_contig12133:1491..15451622924232.8054786-UTR-S-dermatodea_contig12133:1491..1545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12133 1492..1545 +
1694079112.1874137-UTR-S-dermatodea_contig12133:1491..15451694079112.1874137-UTR-S-dermatodea_contig12133:1491..1545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12133 1492..1545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.7904232-CDS-S-dermatodea_contig12133:987..14911622924232.7904232-CDS-S-dermatodea_contig12133:987..1491Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12133 988..1491 +
1694079112.1715186-CDS-S-dermatodea_contig12133:987..14911694079112.1715186-CDS-S-dermatodea_contig12133:987..1491Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12133 988..1491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12133.1329.1

>prot_S-dermatodea_contig12133.1329.1 ID=prot_S-dermatodea_contig12133.1329.1|Name=mRNA_S-dermatodea_contig12133.1329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=168bp
MAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSD
RTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGL
SLTVADFADIRLRESQMSIDDLDTCSQVYPVRVYNSVSIISEGPRAATKE
EREAQRHTPMTWTTCSI*
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mRNA from alignment at S-dermatodea_contig12133:576..1545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12133.1329.1 ID=mRNA_S-dermatodea_contig12133.1329.1|Name=mRNA_S-dermatodea_contig12133.1329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=970bp|location=Sequence derived from alignment at S-dermatodea_contig12133:576..1545+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTACTATACACAGTGTCGACACGAGCCCCAGCGTACATACGTTTGCG ACCAGTATGTAGCGAGCCTAAACCGCAGTCGCACACTAAAAATGCTCCGC CCGGCAACGCTGAGTCGACCGATATACCAGTCAAGCCCCACCACCCGAAC TCCTGGAATGTTTCGACGAAAGTCAACGCGCAACCTTCCTACGCATGTAG TATGACGTACCTTCGCACAATATTAACATCGACTTCGCGCTGGAAGGCCC TGGCTGGGACGCGTCCGTCATGGACTCCCTCAGCGAAATACTGCAAGAAT ACTGAATACGTTTTTTCGGCGTCGCCCCCCGACTACGGCGAGTGCTCCGT GCAGCCATGTGATATTATAGCATGCATAGCCTGTACATTCCAGGCCTTAC CGCATCAGCCCAATGGCCAAAATCAGGGAGCGCAACGCCCGCGTCCAGCG CTGGCTGGAATTCTTGTCGGCGTACGGGCACACCCTCGAATACCGCAAGG GCAGCGCTAACGGCAACGCGGTTTTCCTCTCCCGTCTTCTCCTTCCAGCC CCCGACAGCGACCGCACCAGTCCATACCGGCTCACGGAACCCGACGATGT TGTTATTTACCTCATCCAGGCTTGCGGTCTGACCACGTCGACCTCCCTGA CACCTGGTGTTGGTCTGGGTGGGTTACTACCCCCCCCACCCGAGCCAGGT TCAGGTGGGCTCTCCCTAACAGTCGCAGATTTCGCGGATATTCGGCTACG CGAGTCGCAGATGAGCATTGACGACCTCGACACCTGTTCACAGGTATATC CGGTTCGTGTCTACAATTCCGTCTCCATTATATCAGAGGGTCCAAGGGCG GCGACGAAGGAGGAGCGGGAGGCGCAGAGACATACGCCGATGACATGGAC GACCTGCTCGATTTGATGGACTTCGCGGAATCTAAGTGATTCTACCCCGG GCGCTGGTCGCATTTTGACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12133:576..1545+

>mRNA_S-dermatodea_contig12133.1329.1 ID=mRNA_S-dermatodea_contig12133.1329.1|Name=mRNA_S-dermatodea_contig12133.1329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig12133:576..1545+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCAAAATCAGGGAGCGCAACGCCCGCGTCCAGCGCTGGCTGGAATT
CTTGTCGGCGTACGGGCACACCCTCGAATACCGCAAGGGCAGCGCTAACG
GCAACGCGGTTTTCCTCTCCCGTCTTCTCCTTCCAGCCCCCGACAGCGAC
CGCACCAGTCCATACCGGCTCACGGAACCCGACGATGTTGTTATTTACCT
CATCCAGGCTTGCGGTCTGACCACGTCGACCTCCCTGACACCTGGTGTTG
GTCTGGGTGGGTTACTACCCCCCCCACCCGAGCCAGGTTCAGGTGGGCTC
TCCCTAACAGTCGCAGATTTCGCGGATATTCGGCTACGCGAGTCGCAGAT
GAGCATTGACGACCTCGACACCTGTTCACAGGTATATCCGGTTCGTGTCT
ACAATTCCGTCTCCATTATATCAGAGGGTCCAAGGGCGGCGACGAAGGAG
GAGCGGGAGGCGCAGAGACATACGCCGATGACATGGACGACCTGCTCGAT
TTGAATGGCCAAAATCAGGGAGCGCAACGCCCGCGTCCAGCGCTGGCTGG
AATTCTTGTCGGCGTACGGGCACACCCTCGAATACCGCAAGGGCAGCGCT
AACGGCAACGCGGTTTTCCTCTCCCGTCTTCTCCTTCCAGCCCCCGACAG
CGACCGCACCAGTCCATACCGGCTCACGGAACCCGACGATGTTGTTATTT
ACCTCATCCAGGCTTGCGGTCTGACCACGTCGACCTCCCTGACACCTGGT
GTTGGTCTGGGTGGGTTACTACCCCCCCCACCCGAGCCAGGTTCAGGTGG
GCTCTCCCTAACAGTCGCAGATTTCGCGGATATTCGGCTACGCGAGTCGC
AGATGAGCATTGACGACCTCGACACCTGTTCACAGGTATATCCGGTTCGT
GTCTACAATTCCGTCTCCATTATATCAGAGGGTCCAAGGGCGGCGACGAA
GGAGGAGCGGGAGGCGCAGAGACATACGCCGATGACATGGACGACCTGCT
CGATTTGA
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