mRNA_S-dermatodea_contig12133.1329.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JGN7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN7_9PHAE) HSP 1 Score: 116 bits (291), Expect = 8.730e-26 Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 2
Query: 383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
++S + + K+ E NARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+T P + D ++LI+ACG +S TP VGLGGL PP P L+L +DF D R
Sbjct: 317 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIRACGRNHRSSSTPEVGLGGLRPPYPGGVFSPLALQPSDFGDFR 437
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5L3E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E2_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.260e-24 Identity = 63/118 (53.39%), Postives = 79/118 (66.95%), Query Frame = 2
Query: 416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVV-IYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIRLRESQMS 766
AK+ E NARVQRWLE L+AY ++LEYRKGS NGNA FLSRL + A +SDR+ RLT DD ++ I++CGLT S GVGLGG +P P GGL+ + ADF D R ++S
Sbjct: 256 AKVGENNARVQRWLELLTAYNYSLEYRKGSPNGNADFLSRLPIDAAESDRSGRSRLTPDDDEEGVFFIRSCGLTPSGHRAVGVGLGGHVPKTPASVLGGLAPSTADFVDFRRHGPRLS 373
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.700e-24 Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 2
Query: 416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLT-EPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
AK+ E NARVQRWLEFL+AY +TLEYRKGSANGNA FLSRL + A + DR+ RLT + D+ + I++CGLT S GVGLGGL+P P GGL+ + DF D R
Sbjct: 652 AKVGENNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRSGRSRLTPDGDEEGVSFIRSCGLTPSVHRAVGVGLGGLVPTSPTSVLGGLAPSTDDFIDFR 762
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KAD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD8_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.760e-24 Identity = 63/111 (56.76%), Postives = 76/111 (68.47%), Query Frame = 2
Query: 416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVV-IYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
AK+ NARVQRWLEFL+AY +TLEYRKGSANGNA FLSRL + A + DR+ RLT DD ++ I++CGLT S GVGLGGL+P P GGL+ + DF D R
Sbjct: 187 AKVGGNNARVQRWLEFLTAYNYTLEYRKGSANGNADFLSRLPIDAAECDRSGRSRLTPDDDEEGVFFIRSCGLTPSGHRAVGVGLGGLVPTSPTSVLGGLAPSTDDFIDFR 297
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JDY1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY1_9PHAE) HSP 1 Score: 112 bits (280), Expect = 6.460e-24 Identity = 62/121 (51.24%), Postives = 78/121 (64.46%), Query Frame = 2
Query: 383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
++S + + K+ ERNARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+T P + D ++LI ACG +S TP VGLGGL PP +L +DF D R
Sbjct: 413 IYSDHEALESIGKVGERNARVQRWLEFLSNFDYTLKYRKGSANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFGDFR 533
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KHG2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG2_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.330e-23 Identity = 61/121 (50.41%), Postives = 77/121 (63.64%), Query Frame = 2
Query: 383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
++S + + K+ E NARVQRWLEFLS + +TL+YRKGSANGNA FL RL LPA D+D+T PY + D ++LI ACG +S TP VGLGGL PP +L +DF D R
Sbjct: 545 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLPRLPLPAQDTDKTGPYGIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFRDFR 665
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JPT7_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.970e-23 Identity = 60/121 (49.59%), Postives = 76/121 (62.81%), Query Frame = 2
Query: 383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
++S + + K+ E NARVQRWLEFLS + +TL+YR+GSANGNA FLSRL LPA D+D T P + D ++LI ACG +S TP VGLGGL PP +L +DF D R
Sbjct: 207 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRQGSANGNADFLSRLPLPAQDTDETGPDCIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFGDFR 327
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KTG7_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.250e-23 Identity = 70/159 (44.03%), Postives = 89/159 (55.97%), Query Frame = 2
Query: 383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIRLRESQMSIDDLDTC--SQVYPVRVYNSVSIISEGPRAA 853
++S + + K+RE NARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+ P + D ++LI AC +S TP VGLGGL PP +L +D D RL D TC SQ P S + S GP ++
Sbjct: 209 IYSDHKALESIGKVREHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRLPLPAQDTDKIGPDCIDGVDQAGVFLIWACRRNYHSSCTPEVGLGGLRPPCTAGVFSPPALQPSDLGDFRL---DALTDSKITCENSQRSPGVFIVSPVLTSSGPASS 364
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5KKX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.480e-23 Identity = 61/121 (50.41%), Postives = 77/121 (63.64%), Query Frame = 2
Query: 383 VHSRPYRISPMAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLTEPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIR 745
++S + + K+ E NARVQRWLEFLS + +TL+YRKGSANGNA FLSRL LPA D+D+T P + D ++LI ACG +S TP VGLGGL PP +L +DF D R
Sbjct: 648 IYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIWACGRNYHSSSTPEVGLGGLRPPCTAGVFSPPALQPSDFGDFR 768
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Match: A0A6H5JL71_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL71_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.670e-23 Identity = 63/136 (46.32%), Postives = 84/136 (61.76%), Query Frame = 2
Query: 416 AKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDRTSPYRLT-EPDDVVIYLIQACGLTTSTSLTPGVGLGGLLPPPPEPGSGGLSLTVADFADIRLRESQMSIDDLDTCSQVYPVRVYNS 820
AK+RE NARVQRWLEFL+AY +TL+YRKGSAN NA FLSRL + + DR+ +LT + DD ++ I++CGL S GVGLGGL+P P GGL+ DF D R ++S L ++ + + S
Sbjct: 445 AKVRENNARVQRWLEFLTAYNYTLKYRKGSANCNADFLSRLPIDEAECDRSGRSQLTPDDDDEGVFFIRSCGLMPSGHRAVGVGLGGLVPTSPTSVLGGLAPITDDFIDFRRHGPRLSPSGLSFSPGIWNIAPWPS 580 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12133.1329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12133.1329.1 >prot_S-dermatodea_contig12133.1329.1 ID=prot_S-dermatodea_contig12133.1329.1|Name=mRNA_S-dermatodea_contig12133.1329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=168bp MAKIRERNARVQRWLEFLSAYGHTLEYRKGSANGNAVFLSRLLLPAPDSDback to top mRNA from alignment at S-dermatodea_contig12133:576..1545+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12133.1329.1 ID=mRNA_S-dermatodea_contig12133.1329.1|Name=mRNA_S-dermatodea_contig12133.1329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=970bp|location=Sequence derived from alignment at S-dermatodea_contig12133:576..1545+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12133:576..1545+ >mRNA_S-dermatodea_contig12133.1329.1 ID=mRNA_S-dermatodea_contig12133.1329.1|Name=mRNA_S-dermatodea_contig12133.1329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig12133:576..1545+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |