mRNA_S-dermatodea_contig12092.1301.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE) HSP 1 Score: 340 bits (871), Expect = 4.710e-113 Identity = 182/247 (73.68%), Postives = 206/247 (83.40%), Query Frame = 1
Query: 1 RYKNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGL-LPTDAQLALALSMPEESVRLYRRSALPANVQNLDDPTLRESISGVE-------GRIGGEHWPWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGL----EDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQESDEANGLLLAYVDLV 705
RYK +SR+LSLDDLTQEG+VGLLQAV KFDPTKGTRFSSYAVFRIKAS+LRAIA+KDRLVRVPVHAQD+AMRILA SH++QLE+G +PTDAQLA+AL MPE SV LYR+S LP N+ +LD+ L S G GR+GGE WPW+AS+LAQA VVRRDM R MQACLSPTEERALRLRFGL ++GA G GALTFKEIGRTME+SAEGIR+ VFR+IAKLQ SDEANGLLLAY DL+
Sbjct: 193 RYKQVSRNLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESGGDVPTDAQLAVALGMPEASVALYRKSLLPQNIADLDNSALSGSPQGRAAGGGSRGGRVGGEQWPWEASQLAQAYVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAAGGGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI 439
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI) HSP 1 Score: 336 bits (862), Expect = 1.700e-112 Identity = 179/251 (71.31%), Postives = 207/251 (82.47%), Query Frame = 1
Query: 1 RYKNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGL-LPTDAQLALALSMPEESVRLYRRSALPANVQNLDDPTLRESISG-----------VEGRIGGEHWPWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGL----EDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQESDEANGLLLAYVDLV 705
RYK +SR+LSLDDLTQEG+VGLL+AV KFD TKGTRFSSYAVFRIKAS+LRAIA+KDRLVRVPVHAQD+AMRILA SH++QLE+G +PTDAQLA+AL MPE SV LYR+S LP N+ +LD+P L S G + GR+GGE WPW+AS+LAQA VVRRDM R MQACLSPTEERALRLRFGL ++GA + GALTFKEIGRTME+SAEGIR+ VFR+IAKLQ SDEANGLLL+Y DL+
Sbjct: 131 RYKQVSRNLSLDDLTQEGNVGLLEAVEKFDSTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESGGDVPTDAQLAVALGMPEASVALYRKSLLPQNIADLDNPALPSSPQGRGGSGAAGGGSLGGRVGGEQWPWEASQLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAVADGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSYADLI 381
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: A0A835ZDU2_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU2_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.830e-47 Identity = 103/237 (43.46%), Postives = 149/237 (62.87%), Query Frame = 1
Query: 1 RYKNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVRLYR----RSALPANVQNLDDPTLRESISGVEGRIGGEHWPWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQESDEANGLLLAYVD 699
+Y +++SL+LDDL QEG++GLL A +KFDP KG RF +YA FR+KAS+LRAIANKDR +R+PVH QD A ++ + + +Q+ G PTDA++A L M V +R + A+ N + D + R A+ A++++V D++RV++ L+P E AL+LRFGL+ G+ AG LTFKE+G +M+ SAEGIR+ V RA+ KL+E EA LL Y +
Sbjct: 125 KYAFITKSLTLDDLIQEGNLGLLSAADKFDPDKGARFGTYAAFRVKASVLRAIANKDRQIRIPVHIQDVAGKVRSATQRLQVTLGRPPTDAEIAATLDMLPSEVTAHREMMDKEAVTVNAVSDRD------VMAFAAR---------ATPQARSEMV-EDLKRVLELYLAPKEIEALQLRFGLD----GQAAGPLTFKEVGGSMQTSAEGIRRIVSRALDKLREG-EAWRLLSDYAE 340
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA) HSP 1 Score: 137 bits (345), Expect = 7.770e-35 Identity = 87/233 (37.34%), Postives = 133/233 (57.08%), Query Frame = 1
Query: 1 RYKNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVRLYRRSALPANVQNLDDPTLRESISGVEGRIGG-------------EHWPWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQE 660
RYK+ R L+L DL QEGS GL++A +FDP KG +FS+YA + IK SI+RAIA++ R +R+PVH D I + + LE G PTD +L+L L +P + + YR +A +V +++ +L + G +GG E P D + Q +++ +M +++ LSP E+ +RLRFGL+DG A T +EIG+ V+ E +RQ RA+ KL++
Sbjct: 148 RYKH--RGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAA--RSVLSMEQ-SLNNARKGSAASLGGKSDMTLEDSLRDPEPLPEDRT---QQSMLKENMSQLL-GTLSPREQEVVRLRFGLDDGR------ARTLEEIGQVFCVTRERVRQIESRALQKLRQ 365
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: A0A3M0YZM3_9CHLR (RNA polymerase sigma factor (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M0YZM3_9CHLR) HSP 1 Score: 127 bits (320), Expect = 2.210e-32 Identity = 90/233 (38.63%), Postives = 130/233 (55.79%), Query Frame = 1
Query: 1 RYKNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVRLYRRSALPANVQNLDDPTLRESISGVEGRIGGEHWPWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQESDEANGLLLAYVD 699
RY++ R L L DL QEGS+GLL+A+ KFD TKG +FS+YA + IK ++ RA+A++ RLVR+PVH ++ RI A + G PTDA+LA L M EE +R RR+A + +L P E+ S + I H DA A + ++R+ + + LS E R L LR+GL DG T +E+G+ V+ E +RQ +A+ KL+ LL Y+D
Sbjct: 40 RYRD--RGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQAARRQLTQSLGREPTDAELANHLGMSEEKLRELRRTA--QDPVSLATPVGEEADSTLADFIPDPH-ALDADDAAASGMLRQQIAAALDQ-LSERERRVLELRYGLADGQ------PRTLEEVGKAFGVTRERVRQIEVKALRKLRHP-RLGKLLKDYLD 259
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: X1NP93_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1NP93_9ZZZZ) HSP 1 Score: 126 bits (316), Expect = 6.960e-32 Identity = 83/228 (36.40%), Postives = 132/228 (57.89%), Query Frame = 1
Query: 7 KNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVR-LYRRSALPANVQNLDDPTLRESISGVEGRIGGEHW--PWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQESDEANGL 681
K++ R +SL DL QEG++GL++AV KFD KG +FS+YA + I+ ++ RAIA++ R +R+PVH ++ R+L TS + E G PT ++A + + E VR + + S LP + L+ P E S + I + P DA A Q+++ ++ V+ L+P E+R L+LRFGLEDG + T +E+G+ V+ E IRQ +A+ KL+ + L
Sbjct: 33 KHIGRGMSLLDLIQEGNIGLMRAVEKFDYRKGYKFSTYATWWIRQALTRAIADQARTIRIPVHMVETINRLLKTSRRLAQEYGREPTSTEIAKEMEISPEKVREIVKVSQLPIS---LESPIGEEEDSPLGNSIEDRNALPPVDA---ASKQLLKEQIEDVLYT-LTPREQRVLQLRFGLEDGR------SRTLEEVGKEFSVTRERIRQIEAKALRKLRHPSRSRKL 247
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: A0A7W1A713_9CHLR (RNA polymerase sigma factor SigA n=1 Tax=Herpetosiphonaceae bacterium TaxID=2720503 RepID=A0A7W1A713_9CHLR) HSP 1 Score: 128 bits (322), Expect = 1.860e-31 Identity = 86/219 (39.27%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 7 KNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVRLYRRSALPANVQNLDDPTLRESISGVEGRIGGEHW--PWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQ 657
K + R LSL DL QEG+VGL++AV KFD KG +FS+YA + I+ +I RAIA++ R +R+PVH ++ R++ TS + E G P+D +LA AL + E VR R+++L +L+ P +E S + + E P DA A Q++R + +V+ L+ E R L+LRFGLEDG + T +E+G+ V+ E IRQ +A+ KL+
Sbjct: 182 KYIGRGLSLLDLIQEGNVGLIRAVEKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTSRRLTQEHGREPSDEELAQALELSVEKVRSIRKTSLEP--VSLETPVGQEDDSQLGDFLPDEKLEAPSDA---ASHQMLREQVAQVLDQ-LTERERRVLKLRFGLEDGTQR------TLEEVGKEFGVTRERIRQIEVKALRKLR 388
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: UPI00194EADD7 (RNA polymerase sigma factor RpoD n=1 Tax=Spirulina major TaxID=270636 RepID=UPI00194EADD7) HSP 1 Score: 127 bits (320), Expect = 2.480e-31 Identity = 88/233 (37.77%), Postives = 132/233 (56.65%), Query Frame = 1
Query: 7 KNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVRLYRRSA-LPANVQNLDDPTLRESISGVEGRI--GGEHWPWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQESDEANGLLLAYV 696
K M+R LS DL QEGS+GL++A KFD +KG +FS+YA + I+ +I RAIA++ R +R+PVH ++ RI T+ + E G PT+ ++A + M E +R +SA LP + L+ P +E S + I GE SK ++R D++ V+ LSP E LRLR+GL+DG T +EIG+ V+ E IRQ +A+ KL+ + N +L Y+
Sbjct: 160 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHSKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPIS---LETPIGKEEDSRLGDFIEADGETPEDQVSK----SLLREDLENVLDT-LSPRERDVLRLRYGLDDGRMK------TLEEIGQIFNVTRERIRQIEAKALRKLRHPNR-NSILKEYI 377
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: A9B4B0_HERA2 (RNA polymerase sigma factor SigA n=2 Tax=Herpetosiphon TaxID=64 RepID=A9B4B0_HERA2) HSP 1 Score: 128 bits (321), Expect = 2.550e-31 Identity = 84/219 (38.36%), Postives = 132/219 (60.27%), Query Frame = 1
Query: 7 KNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVRLYRRSALPANVQNLDDPTLRESISGVEGRIGGEHW--PWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQ 657
K + R LSL DL QEG+VGL++AV KF+ TKG +FS+YA + I+ +I RAIA++ R +R+PVH ++ R++ T+ + E G P+D +LA AL + E VR R++++ +L+ P +E S + + E P DA A Q++R + +V+ L+ E+R L+LRFGLEDG + T +E+G+ V+ E IRQ +A+ KL+
Sbjct: 181 KYIGRGLSLLDLIQEGNVGLIRAVEKFNYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELAQALDLTVEKVRSIRKTSMEP--VSLETPVGQEEDSQLGDFLPDEKLEAPSDA---ASHQMLREQVAQVLDQ-LTEREKRVLKLRFGLEDGTQR------TLEEVGKEFGVTRERIRQIEVKALRKLR 387
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Match: A0A7Y2SIC5_9CHLR (RNA polymerase sigma factor SigA n=1 Tax=Chloroflexales bacterium ZM16-3 TaxID=2496870 RepID=A0A7Y2SIC5_9CHLR) HSP 1 Score: 127 bits (318), Expect = 6.490e-31 Identity = 88/235 (37.45%), Postives = 131/235 (55.74%), Query Frame = 1
Query: 1 RYKNMSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIANKDRLVRVPVHAQDSAMRILATSHSMQLETGLLPTDAQLALALSMPEESVRLYRRSALPANVQNLDDPTLRESISGVEGRIGGEHWPWDASKLAQAQVVRRDMQRVMQACLSPTEERALRLRFGLEDGARGERAGALTFKEIGRTMEVSAEGIRQTVFRAIAKLQESDEANGLLLAYVDLV 705
RY++ R L L DL QEGS+GLL+A+ KFD KG +FS+YA + IK ++ RA+A++ RLVR+PVH ++ RI A + G P D++LAL LSM EE +R RR+A + +L P E+ S + I H DA A + ++R+ + + L+ E R L LR+GL DG T +E+G+ V+ E +RQ +A+ KL+ LL Y+D +
Sbjct: 175 RYRD--RGLPLLDLIQEGSLGLLRAIEKFDHDKGFKFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQAARRQLTQSLGREPNDSELALTLSMSEEKLRELRRTA--QDPVSLATPVGEEADSTLADFIPDPH-ALDADDAAASGMLRQQIATALDQ-LTERERRVLELRYGLSDGQ------PRTLEEVGKAFGVTRERVRQIEVKALRKLRHP-RLGKLLKDYLDQI 396 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12092.1301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12092.1301.1 >prot_S-dermatodea_contig12092.1301.1 ID=prot_S-dermatodea_contig12092.1301.1|Name=mRNA_S-dermatodea_contig12092.1301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=232bp MSRSLSLDDLTQEGSVGLLQAVNKFDPTKGTRFSSYAVFRIKASILRAIAback to top mRNA from alignment at S-dermatodea_contig12092:240..947+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12092.1301.1 ID=mRNA_S-dermatodea_contig12092.1301.1|Name=mRNA_S-dermatodea_contig12092.1301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig12092:240..947+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12092:240..947+ >mRNA_S-dermatodea_contig12092.1301.1 ID=mRNA_S-dermatodea_contig12092.1301.1|Name=mRNA_S-dermatodea_contig12092.1301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at S-dermatodea_contig12092:240..947+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |