mRNA_S-dermatodea_contig12086.1299.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12086.1299.1
Unique NamemRNA_S-dermatodea_contig12086.1299.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12086.1299.1 vs. uniprot
Match: D8LEW0_ECTSI (20S proteasome subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW0_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.090e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 PSGAFAEWTASAVGKASEKALGKLEAVSDLSALDWRGTAEAAVKATLAGGATECDVLVLR 180
            PSGA+AEWTASAVGKAS+KALG+LEAV DL ALDWRGTAEAAV+A LAGGA  CDVLVLR
Sbjct:  236 PSGAYAEWTASAVGKASDKALGRLEAVPDLGALDWRGTAEAAVRAALAGGAKYCDVLVLR 295
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BLAST of mRNA_S-dermatodea_contig12086.1299.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.130e-21
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 PSGAFAEWTASAVGKASEKALGKLEAVSDLSALDWRGTAEAAVKATLAGGATECDVLVLR 180
            PSGA+AEW ASAVGKAS+KAL KLE+V DL ALDWRGTAEAAV+A LAGGA ECDVLVLR
Sbjct:  544 PSGAYAEWAASAVGKASDKALDKLESVPDLGALDWRGTAEAAVRAALAGGAKECDVLVLR 603
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12086.1299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW0_ECTSI4.090e-2285.0020S proteasome subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K8Y9_9PHAE6.130e-2183.33PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12086contigS-dermatodea_contig12086:4543..6397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.8e-18
Seed eggNOG ortholog2880.D8LEW0
KEGG koko:K02731
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0031597,GO:0032991,GO:0034515,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0183@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog description20S proteasome subunit
Ec32 orthologEc-21_005760.1
Exons2
Model size282
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.28743-CDS-S-dermatodea_contig12086:4543..47651622924230.28743-CDS-S-dermatodea_contig12086:4543..4765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12086 4544..4765 -
1694079110.4415004-CDS-S-dermatodea_contig12086:4543..47651694079110.4415004-CDS-S-dermatodea_contig12086:4543..4765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12086 4544..4765 -
1622924230.2962158-CDS-S-dermatodea_contig12086:6340..63971622924230.2962158-CDS-S-dermatodea_contig12086:6340..6397Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12086 6341..6397 -
1694079110.4519386-CDS-S-dermatodea_contig12086:6340..63971694079110.4519386-CDS-S-dermatodea_contig12086:6340..6397Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12086 6341..6397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12086.1299.1prot_S-dermatodea_contig12086.1299.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12086 4544..6397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12086.1299.1

>prot_S-dermatodea_contig12086.1299.1 ID=prot_S-dermatodea_contig12086.1299.1|Name=mRNA_S-dermatodea_contig12086.1299.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
PSGAFAEWTASAVGKASEKALGKLEAVSDLSALDWRGTAEAAVKATLAGG
ATECDVLVLRCQAPQGATTANPAAEDDGDEARPASSADTLGVA
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mRNA from alignment at S-dermatodea_contig12086:4543..6397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12086.1299.1 ID=mRNA_S-dermatodea_contig12086.1299.1|Name=mRNA_S-dermatodea_contig12086.1299.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1855bp|location=Sequence derived from alignment at S-dermatodea_contig12086:4543..6397- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTCCGGCGCATTCGCAGAGTGGACGGCGTCGGCAGTTGGGAAGGCGTC
GGAGAAGGTGAAGTGCTGTGAATCGCGTTGATGATTATGGTGGAGTGCGT
GCGCGCCGCTACATTTTGTAGAGTACTGCTCCACTGCTTTTGTTTCTAGT
TCTGTTTTGTTTTTATTTTTTTATCATCTTCCGGCAGACCGACCGACCGA
CCGACCGGTATTTTGATGAAAACGAACGCCCCCGTGAACAAAACGATTGT
CGTTCTGCATCACTTCGGCACGTGTCTTGGATCTTTGATCAGCGATACAT
TTCGTTGATCTTATGACCGTCTACGCCTGTATTTCGATGCTTTTTACGAG
GGACCGTAGTTAACTTTAACAGGTCCAAATTAGCTATTATATTACACAAG
TCGCAACCTTAAAAAAATCAAGATAGGCCGGAATTATCGAGATATCAGGG
TCGATGTTCGTGGATATGGCCATAATCTCGTGTTTTTTGTTTTTCTTGAG
ATTTTTGTTGTTGTTTGGGTATTAATGGTCGAAATATTAGTATTAATAGG
AATAGTTGGGGATTATTGGCAATGAGATTTGGACCTGGTAAAGTTAACTA
TGTTCCTCCGTATTAGTTTAACTTTAAGAGACTTTTAAGCTTCATCCCCA
TTATCATCATGGGCCATCGTCACCATCACCTCACCACCATCATCATCATC
ATCATCATCACTGTGATCGTCGTCATCATCATCATCATTTATTTATTCCC
CATAATCGTCATCATCATCTCTATCATCGTCATCACTATCATCATCACCA
CGACCATGGCATAACGAGCCACGCCAAACACGGCACCACGTTTTCTGTTA
AGCCTGCCTAGGCGTAGGAGGGCGTGCGGGACCGGCGCACGGAGGGGCTG
GGTCCTACCGCCGGCGTTCACTTTTTTGTCTTTGGCCTTTCGCGAACTTG
TCCATGTGTTCATATTAACATTAAAGTCAGGAGGGGCAATCTCGCTGTTG
TTTTGTGGGAATGTCGCGTCGGGACGCCAGTGATGCTGGAGGTAGTTCGG
TATCATATTGTGGCCACGATCACGAGAGCTTGCCACGCCGAAAGCCACAT
TGCATGACCTGGAGAATCCTCGGGAGACATGCACGCATTAGATAGCTCTA
CAGCCGAAATATACATGTTTTCGAAAGGATTTGTTTGCGGTACCGTTGTC
ATAGCTCTCCACGATAAAGTGTGGTATCAACGTGTGACGTTTGACTCCGC
GTGACGCGCGCGTGATATGTGTCTTGAATCGTCCGTAGCCTTGAATTTAT
TGATCGCGCTTTGGTCCCTGATATGATATCTTGGCCAGCGTCATCGATCT
CGTCCAAAGTCTGATGAGAACAAGCAAAAAATGTGTTTATTTATATACGA
TTGAAAAAAAACACTTCGAAACATTGCACGTCCGGTAAATCGAACCAAGA
ATCGCCTTCTAGGCACCCCCCCGTGTACAGCAAAACACAAAGAAACGTTA
CCCCCCCGCCTTCCCAGCCTGGTCGGCGATAGCCCGGCTCATCGCTCCGT
CCCGGCAGTGCTGCGATGCATGGCCCATGTCCATTTGGATACGACATGCG
TTAACCAATAGTACACCCTCCGTTCACTCCAGGCCCTGGGAAAACTCGAA
GCCGTTTCAGATCTCAGCGCTCTGGACTGGCGAGGAACGGCCGAAGCCGC
CGTGAAAGCTACCCTTGCCGGCGGAGCGACCGAGTGCGACGTGCTGGTGC
TGCGTTGCCAGGCTCCACAAGGAGCAACAACAGCAAACCCGGCCGCAGAA
GACGACGGCGACGAGGCTAGACCTGCAAGTAGCGCGGACACGCTTGGGGT
GGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12086:4543..6397-

>mRNA_S-dermatodea_contig12086.1299.1 ID=mRNA_S-dermatodea_contig12086.1299.1|Name=mRNA_S-dermatodea_contig12086.1299.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig12086:4543..6397- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTCCGGCGCATTCGCAGAGTGGACGGCGTCGGCAGTTGGGAAGGCGTC
GGAGAAGCCGTCCGGCGCATTCGCAGAGTGGACGGCGTCGGCAGTTGGGA
AGGCGTCGGAGAAGGCCCTGGGAAAACTCGAAGCCGTTTCAGATCTCAGC
GCTCTGGACTGGCGAGGAACGGCCGAAGCCGCCGTGAAAGCTACCCTTGC
CGGCGGAGCGACCGAGTGCGACGTGCTGGTGCTGCGTTGCCAGGCTCCAC
AAGGAGCAACAACAGCAAACCCGGCCGCAGAAGACGACGGCGACGAGGCT
AGACCTGCAAGTAGCGCGGACACGCTTGGGGTGGCGGCCCTGGGAAAACT
CGAAGCCGTTTCAGATCTCAGCGCTCTGGACTGGCGAGGAACGGCCGAAG
CCGCCGTGAAAGCTACCCTTGCCGGCGGAGCGACCGAGTGCGACGTGCTG
GTGCTGCGTTGCCAGGCTCCACAAGGAGCAACAACAGCAAACCCGGCCGC
AGAAGACGACGGCGACGAGGCTAGACCTGCAAGTAGCGCGGACACGCTTG
GGGTGGCG
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