mRNA_S-dermatodea_contig12056.1278.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12056.1278.1
Unique NamemRNA_S-dermatodea_contig12056.1278.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12056.1278.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 8.380e-40
Identity = 70/77 (90.91%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 VFRLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTEPGEKAYTPLHRAALGGHGEVTRILIKAGADKDARTGGSGA 231
            + RLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTEP EKAYTPLHRA LGGH EV R+LIKAGADKDARTGGSGA
Sbjct:   82 IRRLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTEPSEKAYTPLHRAVLGGHSEVARVLIKAGADKDARTGGSGA 158
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12056.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH38_ECTSI8.380e-4090.91Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12056contigS-dermatodea_contig12056:1444..6622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue4.8e-34
Seed eggNOG ortholog2880.D7FH38
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size480
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12056.1278.1prot_S-dermatodea_contig12056.1278.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12056 1444..6622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.882091-CDS-S-dermatodea_contig12056:1443..15541622924228.882091-CDS-S-dermatodea_contig12056:1443..1554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 1444..1554 +
1694079109.580419-CDS-S-dermatodea_contig12056:1443..15541694079109.580419-CDS-S-dermatodea_contig12056:1443..1554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 1444..1554 +
1622924228.8968086-CDS-S-dermatodea_contig12056:2337..24841622924228.8968086-CDS-S-dermatodea_contig12056:2337..2484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 2338..2484 +
1694079109.595447-CDS-S-dermatodea_contig12056:2337..24841694079109.595447-CDS-S-dermatodea_contig12056:2337..2484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 2338..2484 +
1622924228.9088526-CDS-S-dermatodea_contig12056:4197..42871622924228.9088526-CDS-S-dermatodea_contig12056:4197..4287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 4198..4287 +
1694079109.6050081-CDS-S-dermatodea_contig12056:4197..42871694079109.6050081-CDS-S-dermatodea_contig12056:4197..4287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 4198..4287 +
1622924228.9217165-CDS-S-dermatodea_contig12056:6490..66221622924228.9217165-CDS-S-dermatodea_contig12056:6490..6622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 6491..6622 +
1694079109.612612-CDS-S-dermatodea_contig12056:6490..66221694079109.612612-CDS-S-dermatodea_contig12056:6490..6622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12056 6491..6622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12056.1278.1

>prot_S-dermatodea_contig12056.1278.1 ID=prot_S-dermatodea_contig12056.1278.1|Name=mRNA_S-dermatodea_contig12056.1278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp
VFRLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTEPGEKAYTPLHRAA
LGGHGEVTRILIKAGADKDARTGGSGAAPLHLAARKGHEVCVRTLLLTGA
DRDARRGLDGATPLHQAAFFGQMGAVQELLNAVANPNAQDAEGCTPVFLA
AQEGHEEVCV
back to top

mRNA from alignment at S-dermatodea_contig12056:1444..6622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12056.1278.1 ID=mRNA_S-dermatodea_contig12056.1278.1|Name=mRNA_S-dermatodea_contig12056.1278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5179bp|location=Sequence derived from alignment at S-dermatodea_contig12056:1444..6622+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTTCAGGCTTCTGGAGGCAGGCGTCAATGGGCCTTACGATCGTCCGCG
GGACCCGCGATTTCGCAGGCATACCCTTCTGCACCTCTCATCTGCTTGCG
GGAACACAGAGGTACGAGTAATTTAATATTTGATTGATTGATTGATTGAT
TGAGTGATTGATTGATTGATTGAGGGAACACAGAGGTACGAGTAATTGAG
TAATTGATTGATGCTATGCTATGGTGTCTTACATTGTATTATGTTATATG
GTTATGGTATCACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCTCCGTCCCCCCCCCCCGCCCCCCCCACCCACC
CGCCGGCATGCCCCCCCNNNNNNNNNNGTGTTTGTTTTTGTGTTTTTTTT
TGGTTTTTGTATTCCCCCCCCCCCCCCCCCCCCCCCCGCCATCCATACAC
ACGATATATAATTAGTTCGGTCTAGGCCCCGAACACTCTTAGCAGGATGC
AGCTCAAGTGCTCACGCTTCCTTCATACGACTCGCCGAGCGCATCACGGC
GATTCGCGCTTGGTGAATGCGAGCCTGGTTCGGCGAAAACCCGGCGTGCT
CCGTCCCGGCTTCGTAGGGATGCGAGGTCTATATGGTCTAACGACTGCGG
CATGCATATAACCCCCTAAAAAAATAAAGATTTCAGAAACATAGAGCGAG
CGTTGGGGTCCCACCTTATCAAGAGGGAAAATGGTCCAAGCTGTGATACA
CCTATCGAGGCTCAGTTGTTACATACTTGAAGTATGATGCTATGGTGTCT
TATCATGCGTATCACCCCCCCCCTCTTCCCGCGTTGAAAGGTGGTGAACA
CCCTGCTACGATGGGGCTCGGCGCCAGACGTGGCTTGCCGAGAGCCCGGG
GAGAAAGCTTACACCCCTCTGCACCGGGCGGCCCTCGGGGGGCATGGGGA
GGTGACTAGGATCCTGATCAAGGCGGGCGCTGATAAGGACGCTAGAACGG
GGGGCAGCGGCGCCGCACCACTGCATCTGGCCGCTCGAAAGGTGTGTTCG
TGTGTTTGAGTGCGTGTGTGTGTGTTTTTTTTTTTTTTTTTTTCTAGTTT
TTTTGTCTTTTTGCTTTTTCGTTTTCTTGTGTTGCTGCTATTATTATTTT
TATATTTATTTCTTGTCGTTTCGGGGTCATTTGGCGCCGCGGGAAACTAC
TATAATACTTGTACTGCATCTGGCCGCTCGAAATGTGTTTTTTCTTTATT
TCATTATTCCTTTATTTCAGTTTTTCGTTTTGTTTTGTTTTGATTTTTTC
TGTACTTTTTTGTTTTTTTTGTTTTGTTCTTTGTTTTGTTTTGTTCTTTT
TTGTTTGTCTTTGTTTATCTTGTGTTGCTGTTATTGTTATTATTTATTTT
TTCGTTTCGGGGTAATTTGGCGCCGCGAGAGACTACTGCATCTGCCCGCT
CGAAAGGTGTTTTTCTTTTTGTGTTTTTTCTTTCATACCGGTACATAAAT
AAAAAATAAAACATTTTTTTTTTTTTTTTTGTGTTTCTTGTTTTTATGTT
TTCGTGTTCTTGTGTTTTATGTTTCGATCAATCAATCAATCCATCAGTCC
ATCAAGCTACAGTATACTATCACGATAAACTAGTAGATATTAATAGCCAC
GGCTACGCCCGTGAGGCGTGCGTGCGTTGGCAGGACGATAATATTCGAGG
TGAGTTTGGAGAATACAGTCCCCCCCAGCACATATGCCTTACTGAGAGAG
TAAAGGACGTACAGTAACTACTTTAAGTTTCCCCTGAACCAGTGTGCTTG
AGAGTTAGGGATGTACATGGGAACTAGCTTTTGTTTTTTATAAAAAAAAA
AATACTGTGTGGCGACCCACGACAGGCGTAGGCGCTGCTGGCTGCGTTGG
GCCTCAAATCGTATATGGTAAGAGTTTTTTATTGTAGTGTACCAAATCGG
CCTAAAAAAATCGGCCCTATATCGTACAGGAGTTTAGTGTGGGCTGGTCA
CTCTAAATCGCTATATAAAAAATGTCCGAAGCGCTGTTATTTCATAAAGG
GGTACCCACAGATACCCCACCCCGCCCGTAAGGTGTGCGTTTTCACAAAT
TACTATGAATACATACCACTCTGTAACGTTTGATTAATTTTCTATTTTGT
TCTATTTTGTTCTATTTTTTTCATTTTTTTTCATTTCTTTACTGTACTTA
GGTTCTTTTATTTTACGTTTTTTTTTTTACTTTTTTTTTTTTCTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTCTTATTTTCTTTTATTTTTTGTTTT
TTTTTTTACTTTTTTTTTTTACTTTTTTTTCTTCTTTTTTTTACCTTGAT
TTTTTATTTGATTTGTTTCGATTTCATTTTATTTGCACACGTATGAAACC
GATTCGGCTCAAAGCTCGACTGGACTTGTGGTCAGATAATAAGGTAAACG
ACACAACTCTGATGTAAAATAAAATCATTACCTTATTTTAGTACAGTATT
GAATTTGGAAATTGGGCATTAACCCTTTTGGTACTAGCCCCTAATACTGT
TTGGAGCGCCTGTTAGCACGTAATGAGGCGTGCTTGAATCGAAACTCCAT
TGGTTATGACGCATGAATGACATAGAACGTAGCGCAAGGTAAACTGTGCT
TTAGCTGTCGACTGGCATCGAGAGAGTTTTTGGTCGTTTCGGAGACCCCT
ATTAATTAGCAATAATAATTTAGTAGTACCAACCTCACACGCACGTTTTG
ACAGGGGCATGAGGTCTGTGTGCGAACCCTGCTTCTCACCGGGGCAGACA
GAGACGCCAGGCGAGGGCTCGATGGGGCCACTCCTCTACACCAGGTATCG
TAGCATTTACTTGTTGATTGATTGATTGATTGATTGATTTTTAATTTCAT
AAATTTTAGTGATTGATTGATTGATGGATTGATTGATTGGTTGATTGATA
TTTACTTTTATTTTCAGTTGATTTTTTTATTTGATTGATTGATTGATTGA
TTGATTGATTTTTAATTTATTTTATTTTATTGATTGGTTGATTGATTGAT
TTTGATTTTTAGTTTTAGTTTTAGTTTTAGTTTTGTTTGGTTTTTGTATT
TGATGGATTGATTGATATTGATTGATGGATGGATTGATTGATTGATTGAT
TGATTGATTGATGGATTGATTTTTATTTATATTTTTAGTTGATTTTTATT
TTAGTGATTGAGTGATTGATTGATTGATTGATTGATTGATCTACCTTTCT
TATTCAGATCGCGAATCTATTAGCGCCACGCGTTGCCCTCGATTATATAC
CTTCGTATAATATCTTATTAATTAATGCAACAATGACCGATTGTGTGTAC
GAGTTTTGATTTTAGACAAGGATGCTGTATAATGCCAAACAACTTGGTGT
TTGTGTTGAAGTTTTTATGAAAGCGAAAACACAGCAGCGACACGGCACGC
ACAGCAGCGACACGAGCAGTAGGAGCTCGACCGCGTTCGCCCTCGGTGTC
GCGTTCCGTCGGCATATCGTCCTGCCAACGCACACCTCACACGGGCGTAG
CCGTGGCTACCCACTAGTACAAAATTAAACTCCTATCATATACCACAAAA
CAAATCGCCTGATTTCGATTTTAGATGGGTAAATCGAGGGCAACGCGCGG
CGCAAATAGATTCGCGATCTGAATTAGAAAGGTAGATAACGACACAATAA
AGCCATAAATCGATTATTAGAGTCTAGTGAGGTAAAAACAAAGGCTTATC
ACGTATTAATAGTGTCGAAAACACGATGGGATGGAATGGGCCATGATCCG
ATTGTAGCGAAATGGGAATGGAAGTGAAGCGAAACGAACAAATGCTGTGG
AATGAAATGGGACCTGATCCGATTGTAGCGAAATGGGAATAGAATGGAAA
TGGAATTTCCATCGTAATTCCATCGTCTACGATGGAATGGAACACTACGT
GATAATCCTTGGTAACAACCACCAAAATCGATTTTTACGATACCGCACTT
GGGTTTCTGGACAGTATTTACGCTGGATTTAATGCGCTTTTTCCTTGCAG
AGTGCGTGGGATTCGAAATTAACTCTTTCGGTACTATTAAATTAAATTAG
TATTACTATATACAGTACTGTAGTAGTATCAATATGGCCCCCTCCGAAGC
GACCACAAACTATGCCAGTCGAAACCTACAGCCCCGCTTCCCTTTGTCTC
CGTTCTGTCTCATTCCTATGTCATAACCCATGGGGTTCCCCGGGACCCCG
CTTCAAGCACGCCTCATTACGTGCTAACCGGCGCTCCAAACAGGGGGCTA
TTAATAGTACCTAAAGGGTTAAAATATTTTACCGTTTTTTCAGAAGGTTT
GACAGTGTGCATAATATGCGAATTTGGTCTCCACCCCACACACCCTTAAA
AGTATAGAAGCTAGTTTTCTGCCCCGCTCGTCCTCCTCCTGATGAATCAA
ATAAATAAACGGGCGTAGGTAGTAGTATGTATCATAGCAGTGGCTACCTA
CTAGAAACGTCATAGTTGATTTGATTTTTTATTTGTTTTGCACACGTATA
GCCGATCATCAATGCAACATTTGGTTGTCCCATGCGTGTCGTTTGGCGTC
GCAAACGCAAGGGTGGTTGATGACCAGCAGCTGATGTGGTATCATCCTTG
TGAAAAGCAGCCTAGCCTGGCCGGCGAAAACCCGGCGTATCGATCCGTCC
CGGCATTGTTGGGACGCGTGGTCTAGATGTCCGTTTGATTGGTTTTTTTA
TTTGATTTGATTTGCACACGTATAGCCGATCGGCTTAATCCGACCTACCN
NNNNNNNNNAGTCAAGGAGAAAACTAACTAATCAGAATTCTACTTGTACA
ATACACCGTACCGCCCCTGGTACTTACTATGGTACAAGATAGTTACTATC
TATTCAATAGCTTCTTGTTTTAATTACAAGTACAAGTCTAGAGGTAATTT
CCTACCCGCTTGTCCTCCTCCTGATGCATCAAGCAACTACAAACACAAGT
ATTGCAAATACTTTTTTTTTTTTTTTTTTTTTAATATTATCGAACAGGCG
GCGTTTTTCGGTCAAATGGGAGCCGTCCAGGAGCTTCTAAATGCGGTCGC
GAACCCCAATGCCCAGGACGCCGAGGGCTGCACCCCAGTATTTTTGGCGG
CGCAAGAAGGACATGAGGAGGTGTGTGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12056:1444..6622+

>mRNA_S-dermatodea_contig12056.1278.1 ID=mRNA_S-dermatodea_contig12056.1278.1|Name=mRNA_S-dermatodea_contig12056.1278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig12056:1444..6622+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTTCAGGCTTCTGGAGGCAGGCGTCAATGGGCCTTACGATCGTCCGCG
GGACCCGCGATTTCGCAGGCATACCCTTCTGCACCTCTCATCTGCTTGCG
GGAACACAGAGGTTTTCAGGCTTCTGGAGGCAGGCGTCAATGGGCCTTAC
GATCGTCCGCGGGACCCGCGATTTCGCAGGCATACCCTTCTGCACCTCTC
ATCTGCTTGCGGGAACACAGAGCCCGGGGAGAAAGCTTACACCCCTCTGC
ACCGGGCGGCCCTCGGGGGGCATGGGGAGGTGACTAGGATCCTGATCAAG
GCGGGCGCTGATAAGGACGCTAGAACGGGGGGCAGCGGCGCCGCACCACT
GCATCTGGCCGCTCGAAAGCCCGGGGAGAAAGCTTACACCCCTCTGCACC
GGGCGGCCCTCGGGGGGCATGGGGAGGTGACTAGGATCCTGATCAAGGCG
GGCGCTGATAAGGACGCTAGAACGGGGGGCAGCGGCGCCGCACCACTGCA
TCTGGCCGCTCGAAAGGGGCATGAGGTCTGTGTGCGAACCCTGCTTCTCA
CCGGGGCAGACAGAGACGCCAGGCGAGGGCTCGATGGGGCCACTCCTCTA
CACCAGGGGCATGAGGTCTGTGTGCGAACCCTGCTTCTCACCGGGGCAGA
CAGAGACGCCAGGCGAGGGCTCGATGGGGCCACTCCTCTACACCAGGCGG
CGTTTTTCGGTCAAATGGGAGCCGTCCAGGAGCTTCTAAATGCGGTCGCG
AACCCCAATGCCCAGGACGCCGAGGGCTGCACCCCAGTATTTTTGGCGGC
GCAAGAAGGACATGAGGAGGTGTGTGTGGCGGCGTTTTTCGGTCAAATGG
GAGCCGTCCAGGAGCTTCTAAATGCGGTCGCGAACCCCAATGCCCAGGAC
GCCGAGGGCTGCACCCCAGTATTTTTGGCGGCGCAAGAAGGACATGAGGA
GGTGTGTGTG
back to top