mRNA_S-dermatodea_contig11960.1228.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11960.1228.1
Unique NamemRNA_S-dermatodea_contig11960.1228.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Match: A0A6H5KBR7_9PHAE (GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.580e-35
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 DQVEKIREVVNLNFPPRDGRPSNGRLLEPAVIVSWGGFSLTLACLYGIATSLMWDDGWDYFINLSTADFPVVT 219
            +Q EKIREVV  NFP  DGRPSNG+LLEPA IVSWGGFS+TLACLYGIA +L+WD+GWDYFINLST+DFPVVT
Sbjct:  130 EQTEKIREVVRANFPAADGRPSNGKLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVT 202
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BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Match: D8LDZ1_ECTSI (Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 6.090e-35
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    1 DQVEKIREVVNLNFPPRDGRPSNGRLLEPAVIVSWGGFSLTLACLYGIATSLMWDDGWDYFINLSTADFPVVT 219
            +Q EKIREVV  NFP  DGRP NGRLLEPA IVSWGGFS+TLACLYGIA +L+WD+GWDYFINLST+DFPVVT
Sbjct:  190 EQTEKIREVVRANFPAADGRPPNGRLLEPAGIVSWGGFSITLACLYGIAAALLWDEGWDYFINLSTSDFPVVT 262
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BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.580e-13
Identity = 28/50 (56.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   67 NGRLLEPAVIVSWGGFSLTLACLYGIATSLMWDDGWDYFINLSTADFPVV 216
            N R+LEPA+ VSWGG+++TL  ++GI T + W+D WD+FINLS +DFP++
Sbjct:  230 NVRMLEPALDVSWGGYTITLTAIFGICTMVQWNDEWDFFINLSASDFPLL 279
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BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Match: A0A6H5L1U8_9PHAE (GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1U8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.590e-13
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   67 NGRLLEPAVIVSWGGFSLTLACLYGIATSLMWDDGWDYFINLSTADFPVVT 219
            N R+LEPA  VSWGG+S+TL  L+G++T + W   WDYFINLS  DFP+++
Sbjct:  184 NARILEPAQSVSWGGYSITLTALFGLSTLVEWSRDWDYFINLSATDFPLLS 234
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BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Match: A0A6H5KJT8_9PHAE (Protein xylosyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.820e-10
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   16 IREVVNLNFPPRDGRPSNGRLLEPAVIVSWGGFSLTLACLYGIATSLMWDDGWDYFINLSTADFPVV 216
            +   +      R     N R ++PA+ V+WGGF++TL  +YG+  +L W+  WDYFINLS +D P++
Sbjct:  134 VESGIERMLDERGNGERNVRFVDPAMPVTWGGFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLL 200
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BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Match: D8LCA7_ECTSI (Protein xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA7_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.150e-10
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   67 NGRLLEPAVIVSWGGFSLTLACLYGIATSLMWDDGWDYFINLSTADFPVV 216
            N R + PA+ ++WGGF++TL  +YG+  +L W+  WDYFINLS +D P++
Sbjct:   58 NVRFVSPAMPITWGGFTMTLNAVYGLTQALHWNTKWDYFINLSASDLPLL 107
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BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Match: A0A835YZY2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-8
Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   61 PSNGRLLEPAVIVSWGGFSLTLACLYGIATSLMWDDGWDYFINLSTADFPVVT 219
            P N +L++  V VSWG FS+ L  L+G+++++ W   WD++INLS AD P++T
Sbjct:  101 PKNIKLVDNPVQVSWGRFSMLLTALHGLSSAIGWSSQWDFWINLSPADMPLLT 153
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11960.1228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KBR7_9PHAE1.580e-3580.82GT14 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LDZ1_ECTSI6.090e-3580.82Xylosyltransferase, family GT14 n=1 Tax=Ectocarpus... [more]
A0A6H5L6Q9_9PHAE3.580e-1356.00Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A6H5L1U8_9PHAE6.590e-1356.86GT14 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5KJT8_9PHAE1.820e-1038.81Protein xylosyltransferase (Fragment) n=1 Tax=Ecto... [more]
D8LCA7_ECTSI5.150e-1048.00Protein xylosyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A835YZY2_9STRA1.920e-845.28Core-2/I-branching enzyme-domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11960contigS-dermatodea_contig11960:182..400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue6.1e-29
Seed eggNOG ortholog2880.D8LDZ1
Preferred nameXYLT2
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionXylosyltransferase, family GT14
Ec32 orthologEc-23_003230.1
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924225.2899466-CDS-S-dermatodea_contig11960:181..4001622924225.2899466-CDS-S-dermatodea_contig11960:181..400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11960 182..400 -
1694079107.0641508-CDS-S-dermatodea_contig11960:181..4001694079107.0641508-CDS-S-dermatodea_contig11960:181..400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11960 182..400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11960.1228.1prot_S-dermatodea_contig11960.1228.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11960 182..400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11960.1228.1

>prot_S-dermatodea_contig11960.1228.1 ID=prot_S-dermatodea_contig11960.1228.1|Name=mRNA_S-dermatodea_contig11960.1228.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
DQVEKIREVVNLNFPPRDGRPSNGRLLEPAVIVSWGGFSLTLACLYGIAT
SLMWDDGWDYFINLSTADFPVVT
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mRNA from alignment at S-dermatodea_contig11960:182..400-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11960.1228.1 ID=mRNA_S-dermatodea_contig11960.1228.1|Name=mRNA_S-dermatodea_contig11960.1228.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at S-dermatodea_contig11960:182..400- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCAGGTGGAAAAAATTCGGGAAGTGGTGAATCTCAACTTTCCTCCGAG
AGACGGTAGGCCTTCCAACGGGCGCCTCCTGGAACCGGCGGTGATAGTGT
CGTGGGGGGGGTTTTCGCTGACGTTGGCGTGTTTGTACGGGATCGCGACG
TCCCTGATGTGGGACGACGGGTGGGACTACTTCATCAACCTCAGCACCGC
CGACTTTCCGGTCGTGACT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11960:182..400-

>mRNA_S-dermatodea_contig11960.1228.1 ID=mRNA_S-dermatodea_contig11960.1228.1|Name=mRNA_S-dermatodea_contig11960.1228.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig11960:182..400- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCAGGTGGAAAAAATTCGGGAAGTGGTGAATCTCAACTTTCCTCCGAG
AGACGGTAGGCCTTCCAACGGGCGCCTCCTGGAACCGGCGGTGATAGTGT
CGTGGGGGGGGTTTTCGCTGACGTTGGCGTGTTTGTACGGGATCGCGACG
TCCCTGATGTGGGACGACGGGTGGGACTACTTCATCAACCTCAGCACCGC
CGACTTTCCGGTCGTGACTGACCAGGTGGAAAAAATTCGGGAAGTGGTGA
ATCTCAACTTTCCTCCGAGAGACGGTAGGCCTTCCAACGGGCGCCTCCTG
GAACCGGCGGTGATAGTGTCGTGGGGGGGGTTTTCGCTGACGTTGGCGTG
TTTGTACGGGATCGCGACGTCCCTGATGTGGGACGACGGGTGGGACTACT
TCATCAACCTCAGCACCGCCGACTTTCCGGTCGTGACT
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