mRNA_S-dermatodea_contig11935.1213.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11935.1213.1 vs. uniprot
Match: A0A6H5L316_9PHAE (SHSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L316_9PHAE) HSP 1 Score: 270 bits (690), Expect = 1.930e-81 Identity = 236/517 (45.65%), Postives = 293/517 (56.67%), Query Frame = 1
Query: 43 QAFQSTFLAPIPRTMYHAAALSSPLVPATTMRIFSSPWDPEC--------SRMQQR--------------LRRGGIQRRR-RLDPMIFAPPSVFQDDSQLEIRDPAVA-ETGDSYRLTFDLPAEVEEDGVDVSVSDRLLTIKARVTQEDLGGHRARRRGGGWATSSSRTDSVSRSFVLPEGVSADGVEASWVSDGKVEVKFSKDPT-KAKAADGAAXXXXXXXTGDSPAAASTVSQAVSSTGSTAHTGEDKVPSPPTSAEYLSSLSGAKATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRESQRSSRSPQSVFEALDSEFGEFAKAMWGEDVL---RFPTQEEMAERAEAAREXXAKR------------------VTAIRRATMATNVSEMEDGS-YLVKVALPEGTTRDDVTLTVTPGDALRV------TFAAEGRRSLYKDVRLPKDALFSEISAKFEAEGEKE-----EDGGDEASSA---AVKEEGVSGLEVAVGRAVPPQPKRVDI 1410
QAF STFL+P M+ + + SS VP TT+ + PWD EC R + R R GIQR R PMIFAP S Q + L++ DPAV ET D Y L FDLPA V+ DG++VSVSDRLLT+KA +T+E R GGW T SSR DSVSRSFVLPEG+ AS +S+GK EV+F+KD + + +AA AA TG + +A T + SS D +PPT + +G+ A A XXXXXXXXXXXX A+ R SR P FEA+D EF EFAKAMWGE VL + PTQEE+AE+A ARE KR V A+RRATMA N+S E+GS Y+V+ ALPEGTTR+DV LTV P +++RV T AA R +YKDV LPKDA+ SEISAKFEAE ++ E+ G+EA++ A KE V+G+EV VG+A PPQPK V+I
Sbjct: 19 QAFTSTFLSPSKLAMHRSTSPSSTAVPTTTVTMDCGPWDLECYGVHPFGSERGRGRGVRXXXXXXXXXXXRRNRGIQRYRPSFGPMIFAP-SEGQANQHLQVGDPAVILETNDLYTLAFDLPAGVDHDGLEVSVSDRLLTVKASITREQEADPFITR--GGWVTRSSRVDSVSRSFVLPEGLVESSATAS-LSEGKAEVRFNKDKSVRGEAASTAAPPITPSTTGTAASAGDTTAAPTSSA--------DAGRTPPTDS------TGSTAVAEXXXXXXXXXXXXPVDAASTP---------AASTEPRPSR-PTFPFEAVDQEFREFAKAMWGEHVLERLQVPTQEELAEQAAMAREAWTKRXXXXXXXXXXXXXXXXKRVLAMRRATMAANISLSEEGSSYVVRFALPEGTTREDVKLTVNPSNSIRVAVSARSTAAAGPDRPVYKDVVLPKDAILSEISAKFEAEQHRDGKGTIEEEGEEATAGGGGATKEGAVAGVEVTVGKASPPQPKHVEI 507
BLAST of mRNA_S-dermatodea_contig11935.1213.1 vs. uniprot
Match: D8LP10_ECTSI (SHSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP10_ECTSI) HSP 1 Score: 264 bits (675), Expect = 3.490e-79 Identity = 242/520 (46.54%), Postives = 297/520 (57.12%), Query Frame = 1
Query: 43 QAFQSTFLAPIPRTMYHAAALSSPLVPATTMRIFSSPWDPEC------SRMQQRLRRG------------GIQRRR-RLDPMIFAPPSVFQDDSQLEIRDPAVA-ETGDSYRLTFDLPAEVEEDGVDVSVSDRLLTIKARVTQEDLGGHRARRRGGGWATSSSRTDSVSRSFVLPEGVSADGVEASWVSDGKVEVKFSKDPT-KAKAADGAAXXXXXXXTGDSPAAASTVSQAVSSTGSTAHTGEDKVPSPPTSAEYLSSLSGAKATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRESQRSSRSPQSVFEALDSEFGEFAKAMWGEDVL---RFPTQEEMAERAEAAREXXAKR------------------VTAIRRATMATNVSEMEDGS-YLVKVALPEGTTRDDVTLTVTPGDALRVTFAAEGR-------------RSLYKDVRLPKDALFSEISAKFEAEGEKEE-----DGGDEASSA---AVKEEGVSGLEVAVGRAVPPQPKRVDI 1410
QAF S+F +P M+ + + SS VP TT+ + SPWD EC R + R R G G+QR R PMIFAP S Q + L + DP + ET D Y L FDLPA V+ DG+DVSVSDRLLT+KA +T+E R GGW T SSR DSVSRSFVLPEG+ AS +++ K EV+F+KD + + +AA AA TG V+S G T T+A S+ +G X XXXXXXXXXXXXXXXXXXXXXXX R SR P S FEA+D EF EFAKAMWGEDVL + PTQEE+AE+A ARE AKR V A+RRATMA ++S EDGS Y+V+ ALPEGTTR+DV LTV P ++RV +A RS+YKDV LPKDA+ SEISAKFEAE +E +GG++A++ A KE V+G+EV VG+A PPQPK V+I
Sbjct: 19 QAFTSSFFSPSKLAMHRSPSSSSTAVPTTTVTMDCSPWDLECYGVDPFGRERGRGRGGXXXXXXXXXRKRGMQRYRPSFGPMIFAP-SEGQPNQHLRVGDPVIILETDDLYALAFDLPAGVDHDGLDVSVSDRLLTVKASITREQEADPFTTR--GGWVTRSSRVDSVSRSFVLPEGLVESSATAS-LAESKAEVRFNKDKSVRGEAASTAAPPVTPSTTGT-----------VASAGDT------------TAAPASSADAGRTPLTDSTGSXPXXXXXXXXXXXXXXXXXXXXXXXXXXXEPRPSR-PASPFEAVDQEFREFAKAMWGEDVLERLQVPTQEELAEQAAMAREAWAKREAXXXXXXXXXXXXXXXRVLAMRRATMAADISLSEDGSSYVVRFALPEGTTREDVKLTVNPSKSIRVAVSATSXXXXXXXXXXXXPDRSVYKDVALPKDAILSEISAKFEAEQHPDEKGNAEEGGEKATAGGGGATKEGAVAGVEVTVGKASPPQPKNVEI 510
BLAST of mRNA_S-dermatodea_contig11935.1213.1 vs. uniprot
Match: D7FTP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP7_ECTSI) HSP 1 Score: 160 bits (406), Expect = 1.110e-40 Identity = 153/416 (36.78%), Postives = 205/416 (49.28%), Query Frame = 1
Query: 235 FAPPSVFQDDSQLEIRDPAVAETGDSYRLTFDLPAEVEEDGVDVSVSDRLLTIKARVTQE----------DLGGHRARRRGGGWATS--SSRTDSVSRSFVLPEGVSADGVEASWVSDGKVEVKFSK----DPTKAKAADGAAXXXXXXXTGDSPAAASTVSQAVSSTGSTAHTGEDKVPSPPTSA-EYL--SSLSGAKATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRESQRSSRSPQSVFEALDSEFGEFAKAMW-GEDVLRFPTQEEMAERAEAAREXXAKRVTAIRRATMATNVSEMEDGSYLVKVALPEGTTRDDVTLTVTP-GDALRVTFAAEGRRSLYKDVRLPKDALFSEISAKFEAEGEKEEDGGDEASS--AAVKEEGVSGLEVAVGRAVPPQPKRVDIR 1413
F P V ++ + I DP V ET Y LTF+LP+ + + G++VSVS RLLT++AR T+E D G ++ GW + +++T++ +RSF LP+ VS + V ASW +D +V + +K DP A G ST+ + H G+D+ PS +SA EYL S L GA S P S+ E LD EF + MW G+ +RFPT+E++A AR+ K V A+RRATMAT+VSE E Y+VK ALP+G TRDDV L VTP + LRV F EG + K V LP DA FS+ISA+F E K GG K V+GLEVAVGRA P PK ++I+
Sbjct: 93 FDLPLVLEE-CPMCIPDPEVRETDAGYALTFNLPSGISDTGLEVSVSGRLLTVEARTTREENHDVISKSADKGSEGSK----GWVMTRCTTKTNAAARSFTLPDSVSNE-VTASWGNDNQVVINLTKVAHYDPVNA---------------GGMNNVFSTMEDSGVVPVERRH-GDDQHPSASSSAAEYLYGSKLDGA------------------------------------------SLKPSSILE-LDLEFRSLVRDMWHGDGSVRFPTEEQVAATVARARKERKKIVKALRRATMATDVSEKEL-EYVVKFALPQGATRDDVELMVTPDNNGLRVAFFGEGNHMVSKAVCLPSDASFSDISARFTPEPRKRGRGGAAGGGLEGGKKSRNVAGLEVAVGRAAPQLPKSIEIK 442 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11935.1213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11935.1213.1 >prot_S-dermatodea_contig11935.1213.1 ID=prot_S-dermatodea_contig11935.1213.1|Name=mRNA_S-dermatodea_contig11935.1213.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=467bp MLACNACPAQAFQSTFLAPIPRTMYHAAALSSPLVPATTMRIFSSPWDPEback to top mRNA from alignment at S-dermatodea_contig11935:1803..4168- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11935.1213.1 ID=mRNA_S-dermatodea_contig11935.1213.1|Name=mRNA_S-dermatodea_contig11935.1213.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2366bp|location=Sequence derived from alignment at S-dermatodea_contig11935:1803..4168- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11935:1803..4168- >mRNA_S-dermatodea_contig11935.1213.1 ID=mRNA_S-dermatodea_contig11935.1213.1|Name=mRNA_S-dermatodea_contig11935.1213.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2802bp|location=Sequence derived from alignment at S-dermatodea_contig11935:1803..4168- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |