mRNA_S-dermatodea_contig11811.1148.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11811.1148.1
Unique NamemRNA_S-dermatodea_contig11811.1148.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11811.1148.1 vs. uniprot
Match: A0A6H5JHQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ0_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 9.100e-56
Identity = 135/233 (57.94%), Postives = 155/233 (66.52%), Query Frame = 1 
Query:   94 EKPRSRSRSHSMVDG--GGHSLDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKE-----LSQVKEKEEYTSLEGYGDGAGMHVQYAVANA-GTSIAPPHSASASNIADLDIVMGSQFPEEDIGTSSNGGNPGGSGSSMTGGGGARGDRY-PQRYQGRSSV-GLAAGMGYNPISAGWTDFAESIQLDSKLPGAGDGGAGGLSPFMAGDGGIGGSRGGTRRHLPGWDLEPVDA 762
            EK R+RSRSHSM  G  G + LDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKE     LSQVK+KE+Y S EGY DGAG++VQYAVAN  G + APPH++SASNIADLDIVMGSQFP+         GN G           A GDR+ P  YQGRS+   L   M YN +S  W+DFAE+I  D+K     D GAGG S  ++G  G  G  GG R  L  WD +P D+
Sbjct: 1196 EKVRTRSRSHSMHMGDVGVNGLDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKEAIVGPLSQVKDKEDYGSFEGYEDGAGVYVQYAVANQQGAAKAPPHTSSASNIADLDIVMGSQFPD---------GNSGXXXXXXX----ATGDRFQPMGYQGRSAKRSLTPSMNYNQVSTAWSDFAEAI--DAKHV---DDGAGGFSDLVSGAAGGNGQFGGGRGGLNDWDFDPPDS 1410
[Close]
BLAST of mRNA_S-dermatodea_contig11811.1148.1 vs. uniprot
Match: D7G2K1_ECTSI (Alpha,alpha-trehalose-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 5.510e-45
Identity = 108/167 (64.67%), Postives = 120/167 (71.86%), Query Frame = 1 
Query:   94 EKPRSRSRSHSMVDG--GGHSLDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKELSQVKEKEEYTSLEGYGDGAGMHVQYAVANA-GTSIAPPHSASASNIADLDIVMGSQFPEEDIGTSSNGGNPGGSGSSMTGGGGARGDRY-PQRYQGRSSV-GLAAGMGYN 579
            EK R+RSRSHSM  G  G + LDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKELSQVK+KE+Y S EGY DGAG++VQYAVAN  G + APPH++SASNIADLDIVMGSQFP+            G SG        A GDR+ P  Y GRS+   L   M YN
Sbjct:  620 EKVRTRSRSHSMHMGDIGVNGLDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKELSQVKDKEDYGSFEGYEDGAGVYVQYAVANQQGAAKAPPHTSSASNIADLDIVMGSQFPD------------GNSGXXXXXXXXATGDRFQPMGYLGRSAKRSLTPSMNYN 774
[Close]
BLAST of mRNA_S-dermatodea_contig11811.1148.1 vs. uniprot
Match: A0A836CNA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.130e-6
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  151 LDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKELS 261
            LDLPINTFSCTVGLK+SQA YYIKS  A  AL K+LS
Sbjct:  362 LDLPINTFSCTVGLKVSQAQYYIKSRQAVGALLKDLS 398
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11811.1148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHQ0_9PHAE9.100e-5657.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2K1_ECTSI5.510e-4564.67Alpha,alpha-trehalose-phosphate synthase n=1 Tax=E... [more]
A0A836CNA9_9STRA4.130e-678.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11811contigS-dermatodea_contig11811:219..4177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionalpha,alpha-trehalose-phosphate synthase
Ec32 orthologEc-11_002530.1
Exons4
Model size781
Cds size780
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11811.1148.1prot_S-dermatodea_contig11811.1148.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11811 219..4176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.0227737-CDS-S-dermatodea_contig11811:218..3601622924219.0227737-CDS-S-dermatodea_contig11811:218..360Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 219..360 +
1694079101.4590003-CDS-S-dermatodea_contig11811:218..3601694079101.4590003-CDS-S-dermatodea_contig11811:218..360Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 219..360 +
1622924219.0342858-CDS-S-dermatodea_contig11811:1921..20341622924219.0342858-CDS-S-dermatodea_contig11811:1921..2034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 1922..2034 +
1694079101.4749205-CDS-S-dermatodea_contig11811:1921..20341694079101.4749205-CDS-S-dermatodea_contig11811:1921..2034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 1922..2034 +
1622924219.0457115-CDS-S-dermatodea_contig11811:3459..36271622924219.0457115-CDS-S-dermatodea_contig11811:3459..3627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 3460..3627 +
1694079101.4848874-CDS-S-dermatodea_contig11811:3459..36271694079101.4848874-CDS-S-dermatodea_contig11811:3459..3627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 3460..3627 +
1622924219.0563161-CDS-S-dermatodea_contig11811:3819..41761622924219.0563161-CDS-S-dermatodea_contig11811:3819..4176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 3820..4176 +
1694079101.498006-CDS-S-dermatodea_contig11811:3819..41761694079101.498006-CDS-S-dermatodea_contig11811:3819..4176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11811 3820..4176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11811.1148.1

>prot_S-dermatodea_contig11811.1148.1 ID=prot_S-dermatodea_contig11811.1148.1|Name=mRNA_S-dermatodea_contig11811.1148.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=260bp
GGTEHREPQQWTADFAGERRARDTRSGEGQHEKPRSRSRSHSMVDGGGHS
LDLPINTFSCTVGLKLSQANYYIKSSAAAAALCKELSQVKEKEEYTSLEG
YGDGAGMHVQYAVANAGTSIAPPHSASASNIADLDIVMGSQFPEEDIGTS
SNGGNPGGSGSSMTGGGGARGDRYPQRYQGRSSVGLAAGMGYNPISAGWT
DFAESIQLDSKLPGAGDGGAGGLSPFMAGDGGIGGSRGGTRRHLPGWDLE
PVDAGWGPLL
back to top

mRNA from alignment at S-dermatodea_contig11811:219..4177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11811.1148.1 ID=mRNA_S-dermatodea_contig11811.1148.1|Name=mRNA_S-dermatodea_contig11811.1148.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3959bp|location=Sequence derived from alignment at S-dermatodea_contig11811:219..4177+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGCACGGAACACCGAGAGCCTCAGCAGTGGACCGCCGATTTCGCCGG
CGAGAGACGAGCGAGAGACACGCGAAGCGGGGAGGGCCAACACGAAAAGC
CCCGCTCGCGGAGCCGGTCGCACTCTATGGTTGACGGGGGAGGTAAAATA
TGTGCAACCGCCTGTGGAGGGTGGCGAATGGCCCGGTATAGAGTCGGGGG
GTTGGGGGGTTGGTGGGGAGGGATTGAACCCAATGCTCGCTCTGTGTTTA
TAAATCTTGTACTTTTTTAGGGGGTGACTCTCAGCGTATGCTCTAGTACG
CGCTGGGATTCCTCCATACGAAAAAAATAGTATGTAATCTCATTTGACGT
TTTTATTTCGAACGATGTCGTTTTTCTCCGGCATTGTCACGACCTTGCTC
CTCTTTCCCATCAGGATGTTTTAGGATACGAGGTGGGAGAAAAACCCACA
GTGATCAGCTTCGAGCTGCCCCATACCGCATATCATTGCCGTAATCATGG
AATGTGCCCTGGAGATCTCGTTATGCCAGAAGAGGGTTGGCATGAGCATC
AGAGTCTCATCCCATTCGGTAAATGCTTTCGTTGTCTCGAGGGGAACGGA
AAAATTCGCTCGTTTTTGGGGGCGGCTGGTGGTGGAGTGGCGAGACGAGG
TGGGCGTCCGGGGACTTGTGTCTCACTTTGTTGGAAAAGGGATAGCGTAG
AAACGGGGGGGTGTTTCATCGTCGGCTTTTGGTCTCCGAGCGAGCGCGCG
TATTGCCACACGCCACCCGACGCGCGTTTTGTTCATCTCCACGCCATAAA
GGCATCCATGTATATATACAATTACCGAAGACACAACGCAGGCAAGGGGA
ACCTCCCACGATATACGTCGTCCTGTTTTTTCGTTCACAAGTTAAGGTAA
CTGCAGTGCCGCGGTGCGACTCGAGGCCTTTCTTTATTTTTTGCGCCCCC
CCCCCCCCCCCCCCCCCCCCGCCGAGGGGAAACCAAAATCACTAGGACGA
CACCAAAAAGAAACAACAAACACCAAAAAAAGGCAACAGGCAAGACAANN
NNNNNNNNCCTGATATCTGTGTCCTTTTTTTTGTTTGCTAAATTAAACTT
AACGCGGGCCCGCGGGGGGACCCGGGGCCTTTCTTTTTTTTTTTCCCCCC
CCCCCCCCCCCCCTGCAGAAAGAGGTCTATGGTCTAACGACTACGGCATG
CACGATCAATGAGTACACCCCCCTGCAGAAAGGGGTGAAACGCATTACAT
TCTACAGGGTACCTGCTGAACTATGTATTGTCGGAATGCCCTGCAGCAAC
CGTTGACTTATTATTAGTACTCCGCCAGGAGTTCTCATGAGCAGATTGTA
GTCTTGAGCGCATTACACATCCACTGTCGTCGTGCATGTTGTGTGCGTGC
GGGGCTTTTGCGCTCGCACGGGGGTCAAAGCCCCTTTGCGGTAGTTGGAG
TATAGTCACGCCTGCTGAACGTGCAACGTTTGGTTGCTCGGTATGTTCGA
TGAACCCATCGCACATGGGTTGGCGTCGCAAACGCAAGGATAGTGGCTAC
CAGCTGGCATCACCCGTGTCAAACGCAGCCTGACTGGAAAAAACTCGGCT
AATCGCTCCGTCCGGGCAGTGTCAGGACGCATAGTCCATGTCCATTTGGA
TACGACATGCGTTTGACAGAAGTACCCTCCCCCCCTCCCTCGACCCCGCA
TAGGTCACAGTTTGGACCTGCCTATCAACACCTTCTCGTGCACGGTCGGG
CTTAAGCTGAGCCAGGCCAACTACTACATCAAAAGCAGCGCGGCCGCGGC
TGCGCTTTGTAAGGAGGTGCGGGCTGACAATATTAATCTCCGCGCACGGC
GTCGCTCTGCGCGAGTCGGAGGAGGAGGGGATTGGGGGCTGTTTGTGACT
AGAGCTTTCAGCTCCGAACTGTGCTATGGTCGGCGACGGTCGACCGTGGT
GTGGTGTGGTGTGGTGTGGTGTTTGTGGCGTTTCGCGGGGTTCCAGCTGA
ATTGCGTTACATAAATATCGCAAGAGTGCCGCGCTTCGGAGCTAACCTGT
TGTCCCACGGGACCGTGATGTACGAAGTGTGTGCTTTACTTGATGTTGCG
GACTGGGGGCTACTGTTGCAACGGCAAAATCCGTCCAGATAGGGGCGGGC
GAAGATGAGGATTGTGCACCACGGATTCTTGTGTTGGGATTTATGGGCCC
GCACGCTTTCACTATTAGGGAGGTACCTGGTACACAGTAGTCAGGAGAAA
ATCTCACGACCATAAATACGCAACTGTTCCGACCATGTGAACACCCAAAC
AACCCCACAAAAAACTCATAAAACAAAAAACAACTCGAGGCCTGGCCTAT
AGTACAAACAAACACCGACCGTGAATACCCAGTCGTTCCGGCCTATTTGG
TTTTGCTAAGTTAAGATTTGTGACGAGTTTTGACCTGTAAACTATGGACC
TCCGTGATACGACTGTGTCGTGGACTCCCTTTGTAACTTTGTGAGACTGC
CTGGTTTTCTCGAGGCCAGTTTCCGTAGCTATGCAAAGACGACAGCAGTT
GGCCTGACATGAGCCCCAGATGAAGGGTTGGGGGGGGGGGGCTCTATGTT
TCTGAAATCTTTATTTTTTTAGGGGAGGAGGGCGGGGGCGGAGGTGGGAA
GTGCGAGGCGCGTGGTTGTTACGATTCCCGTACGGAAGTTTCAATGATGT
CGACACGCTTTCCGCGACGAGGTCTCTAGTGTTGCCTGCGGACGGTTGTT
TCCTGCGAATGGATCGGTTGTTGCGGGCACGTTTTTGCGTTCCGGCGTAC
GACCGCGTGTAGAACTGTGAGTGATGGCTTGGCTGTTGCTTCGCTATGGG
CTCTTTGGAAAAAACAAACGGAAAATAGGCGGGAGCGTCACTCATTTATT
GACAAGTGAAAGAAACAATTCTAACCGGAGATAGCTATTAAGTACTCTTG
CGTCTCGCACATTATTTTATCGAATAAGTCAAGGGATCCTACCCGCGCCC
ACCCCCCCCCCCCCCCCCCCCCACCCGCCCCCCCCCCCCCACCTCCCCCC
ACACCCCGCCACAGTGGACNNNNNNNNNNCGTGGGGCCCCGGGCGCCCGT
CTCTGGGGGAAAGGGCCCCCCCCCCCCCACAAGCGGGTGGTCATTTGTTA
AACCACCAAGCCAAAAAAAAAAGGACCCCCCCCCCCCCCCCCCCCCCCCC
CCTCACGAATCCCCGTCCGTGGGACTCCTTGGTGACGACAGCTGAGCCAG
GTGAAGGAGAAAGAAGAGTACACCAGCCTCGAGGGCTACGGAGACGGAGC
TGGCATGCATGTGCAGTACGCGGTGGCCAATGCTGGCACATCGATAGCAC
CACCGCACTCGGCCTCGGCCTCCAACATTGCCGATCTCGACATTGTAATG
GGCTCGCAGGTACGCGGTGCAAATGCACAACCGCGTGAAATCAATGTCAA
TCCCCTGAAAAGGTCATTAAATTTGTTGTTGTTCAACCGTTGGTCGATTT
ATAAGATTCCCGCAATTCATGGCGCGATGCAAGCCCCAAGTTACTCTATC
GACCTTACCCTCCCACCCCCTCCTCCGCCCTCTCCTAACTGCCGGCCCTA
GTTCCCGGAAGAGGATATTGGGACAAGCAGCAACGGTGGCAACCCCGGGG
GCAGCGGCTCCTCCATGACCGGGGGCGGAGGCGCACGCGGCGACCGCTAC
CCTCAACGCTACCAGGGGCGATCGTCGGTGGGCCTCGCGGCGGGGATGGG
CTACAACCCGATCTCGGCCGGCTGGACCGACTTCGCCGAATCCATCCAGC
TCGACAGCAAGCTTCCAGGCGCTGGAGATGGCGGCGCCGGTGGCCTCTCA
CCTTTCATGGCCGGCGACGGCGGCATCGGCGGTAGCCGGGGCGGCACGAG
GCGCCACCTGCCCGGGTGGGACCTCGAGCCCGTCGATGCCGGGTGGGGAC
CGTTGCTGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11811:219..4177+

>mRNA_S-dermatodea_contig11811.1148.1 ID=mRNA_S-dermatodea_contig11811.1148.1|Name=mRNA_S-dermatodea_contig11811.1148.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at S-dermatodea_contig11811:219..4177+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGCACGGAACACCGAGAGCCTCAGCAGTGGACCGCCGATTTCGCCGG
CGAGAGACGAGCGAGAGACACGCGAAGCGGGGAGGGCCAACACGAAAAGC
CCCGCTCGCGGAGCCGGTCGCACTCTATGGTTGACGGGGGAGGGAGGCAC
GGAACACCGAGAGCCTCAGCAGTGGACCGCCGATTTCGCCGGCGAGAGAC
GAGCGAGAGACACGCGAAGCGGGGAGGGCCAACACGAAAAGCCCCGCTCG
CGGAGCCGGTCGCACTCTATGGTTGACGGGGGAGGTCACAGTTTGGACCT
GCCTATCAACACCTTCTCGTGCACGGTCGGGCTTAAGCTGAGCCAGGCCA
ACTACTACATCAAAAGCAGCGCGGCCGCGGCTGCGCTTTGTAAGGAGGTC
ACAGTTTGGACCTGCCTATCAACACCTTCTCGTGCACGGTCGGGCTTAAG
CTGAGCCAGGCCAACTACTACATCAAAAGCAGCGCGGCCGCGGCTGCGCT
TTGTAAGGAGCTGAGCCAGGTGAAGGAGAAAGAAGAGTACACCAGCCTCG
AGGGCTACGGAGACGGAGCTGGCATGCATGTGCAGTACGCGGTGGCCAAT
GCTGGCACATCGATAGCACCACCGCACTCGGCCTCGGCCTCCAACATTGC
CGATCTCGACATTGTAATGGGCTCGCAGCTGAGCCAGGTGAAGGAGAAAG
AAGAGTACACCAGCCTCGAGGGCTACGGAGACGGAGCTGGCATGCATGTG
CAGTACGCGGTGGCCAATGCTGGCACATCGATAGCACCACCGCACTCGGC
CTCGGCCTCCAACATTGCCGATCTCGACATTGTAATGGGCTCGCAGTTCC
CGGAAGAGGATATTGGGACAAGCAGCAACGGTGGCAACCCCGGGGGCAGC
GGCTCCTCCATGACCGGGGGCGGAGGCGCACGCGGCGACCGCTACCCTCA
ACGCTACCAGGGGCGATCGTCGGTGGGCCTCGCGGCGGGGATGGGCTACA
ACCCGATCTCGGCCGGCTGGACCGACTTCGCCGAATCCATCCAGCTCGAC
AGCAAGCTTCCAGGCGCTGGAGATGGCGGCGCCGGTGGCCTCTCACCTTT
CATGGCCGGCGACGGCGGCATCGGCGGTAGCCGGGGCGGCACGAGGCGCC
ACCTGCCCGGGTGGGACCTCGAGCCCGTCGATGCCGGGTGGGGACCGTTG
CTGTTCCCGGAAGAGGATATTGGGACAAGCAGCAACGGTGGCAACCCCGG
GGGCAGCGGCTCCTCCATGACCGGGGGCGGAGGCGCACGCGGCGACCGCT
ACCCTCAACGCTACCAGGGGCGATCGTCGGTGGGCCTCGCGGCGGGGATG
GGCTACAACCCGATCTCGGCCGGCTGGACCGACTTCGCCGAATCCATCCA
GCTCGACAGCAAGCTTCCAGGCGCTGGAGATGGCGGCGCCGGTGGCCTCT
CACCTTTCATGGCCGGCGACGGCGGCATCGGCGGTAGCCGGGGCGGCACG
AGGCGCCACCTGCCCGGGTGGGACCTCGAGCCCGTCGATGCCGGGTGGGG
ACCGTTGCTG
back to top