mRNA_S-dermatodea_contig11756.1109.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11756.1109.1
Unique NamemRNA_S-dermatodea_contig11756.1109.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A6H5L5D9_9PHAE (Uroporphyrinogen_deCOase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D9_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.710e-53
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREPAVVQGNFDPRLLTDNSPMS--GVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQ 312
            QAAGYDVVTMDTETGRKATRDALEEAARE GREPAVVQGNFDPRLLTD S MS   VREAT  MMRELGPQKLIANLGEGLMG+EDP+SVAAFVDAIH++SE+L++
Sbjct:  212 QAAGYDVVTMDTETGRKATRDALEEAAREIGREPAVVQGNFDPRLLTDESSMSEINVREATETMMRELGPQKLIANLGEGLMGKEDPKSVAAFVDAIHDYSEQLIR 317          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: D8LH59_ECTSI (Uroporphyrinogen decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH59_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.920e-53
Identity = 92/106 (86.79%), Postives = 99/106 (93.40%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREPAVVQGNFDPRLLTDNSPMS--GVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQ 312
            QAAGYDVVTMDTETGRKATRDALEEAARETGREPAVVQGNFDPRLLTD S MS   VREAT  MMRELGPQKLIANLGEGLMG+EDP+SVAAFVDAIH++SE+L++
Sbjct:  313 QAAGYDVVTMDTETGRKATRDALEEAARETGREPAVVQGNFDPRLLTDESSMSEINVREATETMMRELGPQKLIANLGEGLMGKEDPKSVAAFVDAIHDYSEQLIR 418          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A3Z5_9EUGL (Plastid uroporphyrinogen decarboxylase isoform 1 (Fragment) n=1 Tax=Trachelomonas ellipsoidalis TaxID=253960 RepID=A0A1L3A3Z5_9EUGL)

HSP 1 Score: 115 bits (289), Expect = 2.830e-30
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREP---AVVQGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR 315
            Q AGYD+VT+DT+T R ATR+AL+      G      A VQGN D  LL   + +  VREAT+ M+RELGPQ LIANLGEGLMG+EDPR V AFVDA+HE SE +++R
Sbjct:  101 QQAGYDIVTLDTKTSRVATREALQADFAVNGSPAGHVAGVQGNLDVALLQSGTELQ-VREATAQMLRELGPQGLIANLGEGLMGKEDPRLVTAFVDAVHELSEEMIRR 207          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A408_9EUGL (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Trachelomonas volvocina TaxID=103340 RepID=A0A1L3A408_9EUGL)

HSP 1 Score: 115 bits (287), Expect = 1.900e-28
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREPAVV---QGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR 315
            Q AGYD++TMDT+T RKATR ALE   +  G     V   QGNFD +LL D +    VREA + M+++LGPQ LIANLGEGLMG+EDPR V  FVDA+HE SE+++++
Sbjct:  277 QQAGYDIITMDTKTDRKATRAALEADFKAHGSPTGRVSGLQGNFDVKLLQDGTEEQ-VREAVAKMLQDLGPQGLIANLGEGLMGKEDPRLVTTFVDAVHEISEQMIRK 383          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A3Z1_9EUGL (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Discoplastis spathirhyncha TaxID=215771 RepID=A0A1L3A3Z1_9EUGL)

HSP 1 Score: 112 bits (281), Expect = 1.390e-27
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETG---REPAVVQGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR 315
            Q AGYD++TMDT+T RK TR ALE   +  G   +  + VQGN D +LL D +    VR+ T+ M+ ELGPQ LIANLGEGLMG+EDPR V AFVDA+H+ SE+++++
Sbjct:  276 QQAGYDIITMDTKTDRKGTRAALEADFKAHGSPNKRVSGVQGNLDVKLLQDGTEEQ-VRQETARMLEELGPQGLIANLGEGLMGKEDPRLVGAFVDAVHQISEQMIKK 382          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A3Z7_EUGST (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Euglena stellata TaxID=38278 RepID=A0A1L3A3Z7_EUGST)

HSP 1 Score: 110 bits (275), Expect = 7.130e-27
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREP---AVVQGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR 315
            Q AGYD++T+DT+T RKATR AL    +  G      A VQGN D  LL D +    V++AT+ ++ ELGPQ LIANLGEGLMG+EDP+ VA FVDA+HE SE++++R
Sbjct:  250 QQAGYDIITLDTKTDRKATRAALLADFQANGSPSGHMAGVQGNLDVVLLQDGTEQQ-VKDATAKLLEELGPQGLIANLGEGLMGKEDPKLVATFVDAVHEISEKMIRR 356          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A400_9EUGL (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Phacus inflexus TaxID=461210 RepID=A0A1L3A400_9EUGL)

HSP 1 Score: 108 bits (271), Expect = 3.940e-26
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGR---EPAVVQGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR 315
            Q AGYD++T+DT+T R+ATR AL     + G     PA VQGN D  LL D + +  V+  T  M+ ELGPQ LIANLGEGLMG+EDPR V+AFVDA+HE S +++ +
Sbjct:  277 QQAGYDIITLDTKTPRQATRAALRADFEQNGSPSGHPAGVQGNLDVTLLQDGT-VEQVQAETIRMLEELGPQGLIANLGEGLMGKEDPRLVSAFVDAVHELSAKMIAK 383          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A3Z6_9EUGL (Plastid uroporphyrinogen decarboxylase isoform 1 (Fragment) n=1 Tax=Eutreptiella braarudii TaxID=215697 RepID=A0A1L3A3Z6_9EUGL)

HSP 1 Score: 108 bits (271), Expect = 4.040e-26
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREPAV----VQGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLV 309
            Q AGY+++TMDT+T RKATR AL+ A  E    PA     VQGNFD  LL + S  + VR+A + ++++LGPQ+LIANLGEGLMG+E+P  V AFV+A+HE SE+++
Sbjct:  277 QQAGYNIITMDTKTDRKATRAALQ-ADFEANGAPAGRVSGVQGNFDVALLREPSTEAQVRDAVATLLQDLGPQQLIANLGEGLMGKENPELVTAFVNAVHEISEQMI 382          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A3Y8_EUGVI (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Euglena viridis TaxID=3040 RepID=A0A1L3A3Y8_EUGVI)

HSP 1 Score: 110 bits (275), Expect = 4.280e-26
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREPAV---VQGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR 315
            Q AGYD++TMDT+T RKATR AL+      G        VQGN D  LLT  +    VR+AT+ ++++LGPQ LIANLGEGLMG+EDP+ VA FVDA+HE SE+++ +
Sbjct:  461 QQAGYDIITMDTKTDRKATRAALQADFEANGSPTGHITGVQGNLDVALLTTGTEQQ-VRDATAQLLQDLGPQGLIANLGEGLMGKEDPKLVATFVDAVHELSEKMITK 567          
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Match: A0A1L3A3Y6_9EUGL (Plastid uroporphyrinogen decarboxylase isoform 1 (Fragment) n=1 Tax=Colacium vesiculosum TaxID=102910 RepID=A0A1L3A3Y6_9EUGL)

HSP 1 Score: 103 bits (257), Expect = 2.850e-25
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 QAAGYDVVTMDTETGRKATRDALEEAARETGREP----AVVQGNFDPRLLTDNSPMSGVREATSAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR 315
            Q AG+D+VT+DT+  RKATR AL+ A  E    P    A VQGN D  LL   +    VREA + ++ + GPQ LIANLGEGLMG+EDP+ VA FVDAIHE SE+++ +
Sbjct:  119 QQAGFDIVTLDTKADRKATRAALK-ADFEANGSPIGRVAGVQGNLDVALLQSGTEQQ-VREAAAQLLEDFGPQDLIANLGEGLMGKEDPKLVATFVDAIHEISEKMIAK 225          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11756.1109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5D9_9PHAE2.710e-5385.85Uroporphyrinogen_deCOase domain-containing protein... [more]
D8LH59_ECTSI3.920e-5386.79Uroporphyrinogen decarboxylase n=1 Tax=Ectocarpus ... [more]
A0A1L3A3Z5_9EUGL2.830e-3058.33Plastid uroporphyrinogen decarboxylase isoform 1 (... [more]
A0A1L3A408_9EUGL1.900e-2856.48Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A1L3A3Z1_9EUGL1.390e-2754.63Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A1L3A3Z7_EUGST7.130e-2754.63Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A1L3A400_9EUGL3.940e-2653.70Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A1L3A3Z6_9EUGL4.040e-2654.21Plastid uroporphyrinogen decarboxylase isoform 1 (... [more]
A0A1L3A3Y8_EUGVI4.280e-2653.70Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A1L3A3Y6_9EUGL2.850e-2553.21Plastid uroporphyrinogen decarboxylase isoform 1 (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11756contigS-dermatodea_contig11756:4199..5000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue7.3e-38
Seed eggNOG ortholog2880.D8LH59
Preferred nameHEME4
KEGG rclassRC00872
KEGG koko:K01599
KEGG ReactionR03197,R04972
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
EggNOG free text desc.uroporphyrinogen decarboxylase activity
EggNOG OGsCOG0407@1,KOG2872@2759
EC4.1.1.37
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUroporphyrinogen decarboxylase, chloroplast precursor
Ec32 orthologEc-24_000650.1
Exons2
Model size315
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11756.1109.1prot_S-dermatodea_contig11756.1109.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11756 4199..4973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.1767766-CDS-S-dermatodea_contig11756:4198..43511622924216.1767766-CDS-S-dermatodea_contig11756:4198..4351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11756 4199..4351 -
1694079099.411293-CDS-S-dermatodea_contig11756:4198..43511694079099.411293-CDS-S-dermatodea_contig11756:4198..4351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11756 4199..4351 -
1622924216.1921992-CDS-S-dermatodea_contig11756:4838..49731622924216.1921992-CDS-S-dermatodea_contig11756:4838..4973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11756 4839..4973 -
1694079099.4243374-CDS-S-dermatodea_contig11756:4838..49731694079099.4243374-CDS-S-dermatodea_contig11756:4838..4973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11756 4839..4973 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.2004766-UTR-S-dermatodea_contig11756:4973..50001622924216.2004766-UTR-S-dermatodea_contig11756:4973..5000Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11756 4974..5000 -
1694079099.433311-UTR-S-dermatodea_contig11756:4973..50001694079099.433311-UTR-S-dermatodea_contig11756:4973..5000Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11756 4974..5000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11756.1109.1

>prot_S-dermatodea_contig11756.1109.1 ID=prot_S-dermatodea_contig11756.1109.1|Name=mRNA_S-dermatodea_contig11756.1109.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
MDTETGRKATRDALEEAARETGREPAVVQGNFDPRLLTDNSPMSGVREAT
SAMMRELGPQKLIANLGEGLMGREDPRSVAAFVDAIHEFSERLVQR
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mRNA from alignment at S-dermatodea_contig11756:4199..5000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11756.1109.1 ID=mRNA_S-dermatodea_contig11756.1109.1|Name=mRNA_S-dermatodea_contig11756.1109.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=802bp|location=Sequence derived from alignment at S-dermatodea_contig11756:4199..5000- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCTGCGGGTTACGATGTGGTGACTATGGACACAGAGACGGGTCGCAA GGCCACCCGCGACGCCCTGGAGGAGGCAGCGCGAGAAACGGGGAGGGAGC CGGCTGTGGTGCAGGGTAACTTTGACCCGAGGCTGCTAACCGATAACAGC CCGATGAGCGGCGTCAATGTGAGCCTCTGTTTGCGTCCGTGGCCGGATTC ATATTCGCGTCACGCGTCCTATCAGTTCGATTGTATCGAGGCGGTAGGCA CGGTGGTTCGGTAGTAGCGGCGAGCCTTTAAGGACAGTAGTTGGTGGGAT TTTGAAAGGGGTAGCGGGCGCCGGTTTGGGGGCGCTTGTGTGACTGCCTG CGTACCTGTCTGCATGCGATGGACGTGTCGTGCGCCATCTCATCGTTGAG CGACATATCTTACAACTTGTCTTAGAGTTTATAGTGCGATTTCTCTTACA GCTTATTTATAGCTAATCTTTCAGCGGTCAAATTTCCATCATGGGACAGC CAATAAGCGTACTTGCAATACATGTACCGGCATTGGTCTCGAAGTACAAC CGAGTTGTCTTTCCCTTCAAACTCAGGAATCGTCGTATCATATAATAGCT CCTCTGGTTTGAGGTGTTAACTGTCGGATGCCGCCTTGTTCGTGTGCAGG TTCGGGAGGCAACGTCGGCAATGATGCGAGAGCTAGGGCCTCAGAAGCTC ATTGCGAACCTCGGCGAGGGGCTCATGGGGCGGGAGGACCCGAGAAGTGT GGCAGCTTTCGTCGACGCAATTCACGAGTTCTCGGAGCGATTGGTCCAGC GG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11756:4199..5000-

>mRNA_S-dermatodea_contig11756.1109.1 ID=mRNA_S-dermatodea_contig11756.1109.1|Name=mRNA_S-dermatodea_contig11756.1109.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig11756:4199..5000- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACAGAGACGGGTCGCAAGGCCACCCGCGACGCCCTGGAGGAGGC
AGCGCGAGAAACGGGGAGGGAGCCGGCTGTGGTGCAGGGTAACTTTGACC
CGAGGCTGCTAACCGATAACAGCCCGATGAGCGGCATGGACACAGAGACG
GGTCGCAAGGCCACCCGCGACGCCCTGGAGGAGGCAGCGCGAGAAACGGG
GAGGGAGCCGGCTGTGGTGCAGGGTAACTTTGACCCGAGGCTGCTAACCG
ATAACAGCCCGATGAGCGGCGTTCGGGAGGCAACGTCGGCAATGATGCGA
GAGCTAGGGCCTCAGAAGCTCATTGCGAACCTCGGCGAGGGGCTCATGGG
GCGGGAGGACCCGAGAAGTGTGGCAGCTTTCGTCGACGCAATTCACGAGT
TCTCGGAGCGATTGGTCCAGCGGGTTCGGGAGGCAACGTCGGCAATGATG
CGAGAGCTAGGGCCTCAGAAGCTCATTGCGAACCTCGGCGAGGGGCTCAT
GGGGCGGGAGGACCCGAGAAGTGTGGCAGCTTTCGTCGACGCAATTCACG
AGTTCTCGGAGCGATTGGTCCAGCGG
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