mRNA_S-dermatodea_contig1175.1107.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1175.1107.1
Unique NamemRNA_S-dermatodea_contig1175.1107.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A6H5JJK2_9PHAE (CRM1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.670e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMADL 153
            EFSTEDNADLF EEN+AKK+  EDKAR+AQLAVPGLVNPHD PEDDMADL
Sbjct:  898 EFSTEDNADLFLEENLAKKQADEDKARQAQLAVPGLVNPHDLPEDDMADL 947
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: D8LS67_ECTSI (CRM1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS67_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.360e-18
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMADL 153
            EFSTEDNADLF EEN+AKK+  +DKAR+AQLAVPGLVNPHD PEDDMADL
Sbjct:  747 EFSTEDNADLFLEENLAKKQADQDKARQAQLAVPGLVNPHDLPEDDMADL 796
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A397DZ39_9STRA (CRM1_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DZ39_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.370e-10
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPE---DDMADL 153
            EF+ EDNADLF EE++A  +E   +   A+LAVPGLVNPH+RP+   DDMADL
Sbjct:   40 EFAGEDNADLFLEESLAMTQERLARETNARLAVPGLVNPHERPDANADDMADL 92
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A835YZ33_9STRA (Exportin1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ33_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-9
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMADL 153
            EFS E++ +LFYEE  A K  A+    +A+LAVPGLVNPH+RPE+DM DL
Sbjct: 1003 EFSPEESQELFYEETQAYKAAADQALLQARLAVPGLVNPHERPEEDMGDL 1052
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A6U1LIT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LIT5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.280e-9
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMADL 153
            EFS EDN DLF EEN  +K++ + +A   +LAVPGL+NPH+RP DDMADL
Sbjct:  259 EFSAEDNTDLFNEENQRQKQQNDAQALAQKLAVPGLLNPHERP-DDMADL 307
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A397C6E5_9STRA (CRM1_C domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C6E5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.320e-9
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPE---DDMADL 153
            EF+ EDNADLF EE++A  +E   +   A+LAVPGLVNPH+RP+   DDMADL
Sbjct:  676 EFAGEDNADLFLEESLAMTQERLARETNARLAVPGLVNPHERPDANADDMADL 728
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A5D6Y1Y4_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Y4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.560e-8
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMADL 153
            EF+ EDNADLF EE++AK +  + +   A+LAVPGLVNPH+RP D+MADL
Sbjct: 1037 EFAGEDNADLFLEESLAKTQLQQQQELSARLAVPGLVNPHERP-DEMADL 1085
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A2P4XH91_9STRA (CRM1 C terminal Exportin 1-like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XH91_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.620e-8
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMADL 153
            EF+ EDNA+LF EEN+A+ +  E +   A+LAVPGLVNP++RP DDMADL
Sbjct:   84 EFAGEDNAELFLEENLARTQLQEKQDMAAKLAVPGLVNPNERP-DDMADL 132
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: A0A7R9LI94_9ACAR (Hypothetical protein n=2 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9LI94_9ACAR)

HSP 1 Score: 56.2 bits (134), Expect = 7.470e-8
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMAD 150
            EF+ EDN DLF EE  A  R+ ED+ RR QL+VPG++NPH+ PE+ MAD
Sbjct: 1242 EFAGEDNNDLFLEEREASLRQKEDEKRRIQLSVPGIINPHEMPEE-MAD 1289
[Close]
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Match: M4BY55_HYAAE (Importin N-terminal domain-containing protein n=27 Tax=Oomycota TaxID=4762 RepID=M4BY55_HYAAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 EFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMADL 153
            EF+ EDNA+LF EEN+A+ +  E +   A+LAVPGLVNP++RP D+MADL
Sbjct:  958 EFAGEDNAELFLEENLARTQLQEKQDLAAKLAVPGLVNPNERP-DEMADL 1006
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1175.1107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJK2_9PHAE3.670e-1886.00CRM1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LS67_ECTSI9.360e-1884.00CRM1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A397DZ39_9STRA4.370e-1060.38CRM1_C domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A835YZ33_9STRA1.280e-960.00Exportin1 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A6U1LIT5_9STRA5.280e-962.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A397C6E5_9STRA8.320e-960.38CRM1_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A5D6Y1Y4_9STRA1.560e-862.00Importin N-terminal domain-containing protein n=1 ... [more]
A0A2P4XH91_9STRA1.620e-862.00CRM1 C terminal Exportin 1-like protein (Fragment)... [more]
A0A7R9LI94_9ACAR7.470e-859.18Hypothetical protein n=2 Tax=Oppiella nova TaxID=3... [more]
M4BY55_HYAAE1.910e-760.00Importin N-terminal domain-containing protein n=27... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1175contigS-dermatodea_contig1175:21278..21433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.6e-15
Seed eggNOG ortholog2880.D8LS67
Preferred nameXPO1
KEGG koko:K03939,ko:K14290
KEGG TC1.I.1,3.D.1.6
KEGG Pathwayko00190,ko01100,ko03008,ko03013,ko04013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05164,ko05166,ko05169,map00190,map01100,map03008,map03013,map04013,map04714,map04723,map04932,map05010,map05012,map05016,map05164,map05166,map05169
KEGG ModuleM00143
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000056,GO:0000122,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009266,GO:0009408,GO:0009506,GO:0009553,GO:0009555,GO:0009628,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009889,GO:0009890,GO:0009892,GO:0009932,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033750,GO:0034613,GO:0040007,GO:0042221,GO:0042254,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045892,GO:0045934,GO:0046822,GO:0046825,GO:0046907,GO:0048229,GO:0048468,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0055044,GO:0060255,GO:0060341,GO:0060560,GO:0065007,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0098687,GO:0140104,GO:0140142,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.0961287-CDS-S-dermatodea_contig1175:21277..214331622924216.0961287-CDS-S-dermatodea_contig1175:21277..21433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1175 21278..21433 -
1694079099.3645303-CDS-S-dermatodea_contig1175:21277..214331694079099.3645303-CDS-S-dermatodea_contig1175:21277..21433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1175 21278..21433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1175.1107.1prot_S-dermatodea_contig1175.1107.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1175 21278..21433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1175.1107.1

>prot_S-dermatodea_contig1175.1107.1 ID=prot_S-dermatodea_contig1175.1107.1|Name=mRNA_S-dermatodea_contig1175.1107.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=52bp
QEFSTEDNADLFYEENMAKKREAEDKARRAQLAVPGLVNPHDRPEDDMAD
L*
back to top

mRNA from alignment at S-dermatodea_contig1175:21278..21433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1175.1107.1 ID=mRNA_S-dermatodea_contig1175.1107.1|Name=mRNA_S-dermatodea_contig1175.1107.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig1175:21278..21433- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGTTCTCAACAGAAGACAACGCGGACCTGTTCTACGAGGAGAACAT
GGCGAAGAAGCGGGAGGCGGAGGACAAGGCCCGACGAGCCCAGCTGGCCG
TGCCCGGACTGGTTAACCCTCACGACCGCCCAGAGGACGACATGGCGGAC
CTTTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1175:21278..21433-

>mRNA_S-dermatodea_contig1175.1107.1 ID=mRNA_S-dermatodea_contig1175.1107.1|Name=mRNA_S-dermatodea_contig1175.1107.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig1175:21278..21433- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGTTCTCAACAGAAGACAACGCGGACCTGTTCTACGAGGAGAACAT
GGCGAAGAAGCGGGAGGCGGAGGACAAGGCCCGACGAGCCCAGCTGGCCG
TGCCCGGACTGGTTAACCCTCACGACCGCCCAGAGGACGACATGGCGGAC
CTTTGACAGGAGTTCTCAACAGAAGACAACGCGGACCTGTTCTACGAGGA
GAACATGGCGAAGAAGCGGGAGGCGGAGGACAAGGCCCGACGAGCCCAGC
TGGCCGTGCCCGGACTGGTTAACCCTCACGACCGCCCAGAGGACGACATG
GCGGACCTTTGA
back to top