mRNA_S-dermatodea_contig1172.1096.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1172.1096.1
Unique NamemRNA_S-dermatodea_contig1172.1096.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1172.1096.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.110e-6
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = 2 
Query:   11 GDKALEQSLGAVLQWMVYTNRVAIPELQEQEQPMANSAEEAGESFVSPTHTELPLTARDSAALSRRFLSEWRREGYPGRAPP 256
            G+  L+++LGA+L+WM+ TNRV +P+      P A S E AG                  +ALS RFL EW   G PGR  P
Sbjct:    3 GNSGLQRNLGALLEWMISTNRVTVPD------PPAMS-EAAGAXXXXXXXXXXXXXXXXXSALSARFLKEWEAAGCPGRPSP 77
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BLAST of mRNA_S-dermatodea_contig1172.1096.1 vs. uniprot
Match: A0A6H5L817_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L817_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.740e-5
Identity = 29/82 (35.37%), Postives = 40/82 (48.78%), Query Frame = 2 
Query:   11 GDKALEQSLGAVLQWMVYTNRVAIPELQEQEQPMANSAEEAGESFVSPTHTELPLTARDSAALSRRFLSEWRREGYPGRAPP 256
            G+  L+ +LGA+LQWM+ TNRV +P+L         +  E   +  +             +ALS RFL EW   G PGR  P
Sbjct:    3 GNGGLQGNLGALLQWMISTNRVTVPDLP--------AVSEGAGAAATXXXXXXXXXXXXXSALSARFLKEWEAAGCPGRPSP 76
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1172.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLU9_ECTSI9.110e-639.02C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
A0A6H5L817_9PHAE2.740e-535.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1172contigS-dermatodea_contig1172:8273..10079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1172.1096.1prot_S-dermatodea_contig1172.1096.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1172 8280..10079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.3571131-UTR-S-dermatodea_contig1172:8272..82791622924215.3571131-UTR-S-dermatodea_contig1172:8272..8279Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1172 8273..8279 +
1694079098.830389-UTR-S-dermatodea_contig1172:8272..82791694079098.830389-UTR-S-dermatodea_contig1172:8272..8279Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1172 8273..8279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.3661783-CDS-S-dermatodea_contig1172:8279..83451622924215.3661783-CDS-S-dermatodea_contig1172:8279..8345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1172 8280..8345 +
1694079098.8405426-CDS-S-dermatodea_contig1172:8279..83451694079098.8405426-CDS-S-dermatodea_contig1172:8279..8345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1172 8280..8345 +
1622924215.377276-CDS-S-dermatodea_contig1172:9842..100791622924215.377276-CDS-S-dermatodea_contig1172:9842..10079Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1172 9843..10079 +
1694079098.8505294-CDS-S-dermatodea_contig1172:9842..100791694079098.8505294-CDS-S-dermatodea_contig1172:9842..10079Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1172 9843..10079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1172.1096.1

>prot_S-dermatodea_contig1172.1096.1 ID=prot_S-dermatodea_contig1172.1096.1|Name=mRNA_S-dermatodea_contig1172.1096.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MGDKALEQSLGAVLQWMVYTNRVAIPELQEQEQPMANSAEEAGESFVSPT
HTELPLTARDSAALSRRFLSEWRREGYPGRAPPPLPHEQRSPTVPAKRPA
G
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mRNA from alignment at S-dermatodea_contig1172:8273..10079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1172.1096.1 ID=mRNA_S-dermatodea_contig1172.1096.1|Name=mRNA_S-dermatodea_contig1172.1096.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1807bp|location=Sequence derived from alignment at S-dermatodea_contig1172:8273..10079+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAAACCATGGGAGACAAGGCCTTGGAGCAGAGCCTGGGTGCGGTGCTTC
AGTGGATGGTGTACACGAACCGGGTGCGTGTGGGCGTGTGAGGGTGAGCT
GGGCGGGATGTGGTGGAGAATCGGGCACGGAGATGATTGAAGCCAGGGAG
GTTTTGTCTTGTTGCCGACCGAGCTCGGGGTGCGTGTGTGTGGTGCACGG
GGAGTTTCCAGCCTTTTCGGATATCATCCCGAGCTGGAAAAACGCGTGGA
TTATGCGGATAAGCCGGTTTTCCGTTTTCCGATCGATGCTATCATACAGT
ATCTCTTGACGTGACTATCATACTGTGGAGAGCCCTATGCCTTCCCGAGG
GCTTTGGGTTGCTCGGTCGAGGAGGGCCTCTACTGTGTGTTGCTCGGTGG
AAGCGGGTGGGTGCCCCGGTCGGAGTCGCTCGTCTTGGCCCGATGTGGTT
TCCTTGCAAGGTGTGTGACCTTACTGCACTGGGTTACTGAGTTGTGCACG
CTCTACGGCATGCCCTCCCTTGTTACAATTCATCGTGGATCGGAAAACGA
CAGCGTATGATAGTGTGCGTTACAGTACCATACTTGTAATACTTGTAGTA
CTACTCTGTACTGCCTGTAGTACAATTGCAGTATAATATTAATATTATAG
GACAAATTCCCGACAATTCCGCCGTGCCACGTCGCCGCCCCGCATGCCAA
GCCGACAACGTTGTAGTGGGTGGAGTTTTGGGATGAGCACCGTCACAGAA
ACGTGGGGCTTTCCCTCCCTGCAAGATATATTGCAGCAGTCATGCGTAAC
GATTTGGGTTGCGATTGTGGGAGGCCGTAAGGTGAACGTTGGGCTTAAAC
ACCACAGACCCAAATTACTCGTCTGATGATTGATTGATTTGATTGATTGA
TTGATTTGCACACGTATAGCCGATCGGCATAATCCGACCCGACTTGTGNN
NNNNNNNNTCAGACACGCAAAGAGTCAAGGAGAAAATAACTAATCAGAAT
TCTACTTCTACTATACACCGTACCGCCCCTGATGATGTACTTGTATTATA
CAAGTAATGGTATACGATACAATTCCATCGTTGACGGAAGACACCTGACG
ATGCAAATCGTTTATGCCAAAATGCCACCGCCCAGGAGGTGAGAGTGAAG
CCACCACACCACCCCCTGATGGTGGTCACGGATTACCCCATCCGTGGGAA
GACCTTGCCGCATCTGACAGAAAACTGTTGTAGCCGTGTGTCACCGAGGG
CCTGCAGACTTGTGCCAGTACAAGTTATTACACACAGCGAGTTCGAGCAT
TTGTCGGCTGTAAGCGAACATGGCAAGTCCCGCTGTTGTATTCATTCTCG
CAGAGATCGGAAGTGTGATGCGATCGGGACCCACCATTATATGAGCCCGT
TTCGAGTCTTACTTAGTCTTGCCGTCTTCTGACTTCTGATACTTGTAAGA
CCTCATCGCGAGCCACACTATCACAAGAACCTCTTTTTGACACAAAGCTC
CTTTCTCTGGCCACGCGCGCACACTTTTTTTTCTTCTTTTTTTTTACAAC
TCATCGCCCCGAAACACCAGGTCGCCATTCCCGAGCTCCAAGAACAGGAA
CAGCCCATGGCCAATTCCGCCGAGGAGGCAGGCGAATCTTTCGTCTCCCC
AACACACACAGAACTCCCGCTAACGGCCAGGGATTCCGCCGCCCTCAGCC
GCCGCTTCCTGTCGGAGTGGAGACGGGAAGGGTACCCCGGCCGTGCCCCC
CCCCCCCTACCTCATGAGCAGAGGTCGCCGACGGTCCCGGCTAAGCGGCC
CGCTGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1172:8273..10079+

>mRNA_S-dermatodea_contig1172.1096.1 ID=mRNA_S-dermatodea_contig1172.1096.1|Name=mRNA_S-dermatodea_contig1172.1096.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig1172:8273..10079+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGACAAGGCCTTGGAGCAGAGCCTGGGTGCGGTGCTTCAGTGGAT
GGTGTACACGAACCGGATGGGAGACAAGGCCTTGGAGCAGAGCCTGGGTG
CGGTGCTTCAGTGGATGGTGTACACGAACCGGGTCGCCATTCCCGAGCTC
CAAGAACAGGAACAGCCCATGGCCAATTCCGCCGAGGAGGCAGGCGAATC
TTTCGTCTCCCCAACACACACAGAACTCCCGCTAACGGCCAGGGATTCCG
CCGCCCTCAGCCGCCGCTTCCTGTCGGAGTGGAGACGGGAAGGGTACCCC
GGCCGTGCCCCCCCCCCCCTACCTCATGAGCAGAGGTCGCCGACGGTCCC
GGCTAAGCGGCCCGCTGGTGTCGCCATTCCCGAGCTCCAAGAACAGGAAC
AGCCCATGGCCAATTCCGCCGAGGAGGCAGGCGAATCTTTCGTCTCCCCA
ACACACACAGAACTCCCGCTAACGGCCAGGGATTCCGCCGCCCTCAGCCG
CCGCTTCCTGTCGGAGTGGAGACGGGAAGGGTACCCCGGCCGTGCCCCCC
CCCCCCTACCTCATGAGCAGAGGTCGCCGACGGTCCCGGCTAAGCGGCCC
GCTGGT
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