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Homology
BLAST of mRNA_S-dermatodea_contig11713.1094.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI) HSP 1 Score: 429 bits (1103), Expect = 5.110e-137 Identity = 312/559 (55.81%), Postives = 349/559 (62.43%), Query Frame = 1
Query: 1 MTSAGSFVYG---SDGRRKTSTDEQDIADFLSSIENDIAGAEAAGGARAAAPEGISLRGGGTSPGM--DLLFGPASPSTQGAEYGSDRA--LLLGDSEEGIDAAPGDWLRDLESSSTEHRG--DSSASLGV--------DQQATSRDDXXXXXXXXXXXXXXXXXXXXXXXXXXVLGAEPEILDVA--GYDXXXXXXXXXXXSYLHGSRHDMREQHAPSSRHDAR----RSSAATANVDPFAGGRKARPGATQSPTTGMNEVASADEPLDWPGTLDMLGMAADGQKAGSSSSTAPAVPASELPSMAPPAAREESFPDFVEIRDPRRVSQFPKPDNVLAAKAA-GRQGSGDAGAGP--------------GQRQVLAAPLRTVEVYLRPDVTWESVSDVYMAVMLSRGLVVRQQTEKSVTAEKAADGSGDWGTVKLTAGVTRDKLRTLVMQFYADTR--APILSLAGTMARFSGRAGDELYTAIRDALVERRMPLSMLATDAAEVSLDPHYIRDLVGMYAHENVVNLTRYALPLEEFVRGEEERSARLEATLLPQYRATG 1557
M SAGSFV+G S+ R + S +EQDIADF+SSI++ A+GG+ + LRGG +S G D+ G SP G+ A LL D + DA P DWL D E +G DSSA+ Q XXXXXXXXXXXX VLG EP+ILD GY + G R + P+S DA R A A V AGG G+ + +T +E+ PLDW GTLDM+GMA + + +S P SELPS+ PPAARE FPDFVEIRDPR VSQFPKPDN L AKAA G G G AG G GQR VL APLRTVEVYLRPDVTWESVSDVYM VMLSRGLVVR QTEK VTAEK+AD GDW TVKLT GVTRDKLRTLV+QFYADTR APILSLAGT+ARFSGR GD+LYTAIR+ LVER+MPLS LATDA EVSLDPHY+RDLVGMYAHENVVNLTRYALPLEEFVR EEER ARLEATLLPQYRA G
Sbjct: 1 MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDD-----TASGGSTTTSV----LRGGRSSVGKGGDIFLGSLSPPALQQVTGTSAAGELLADDGKAIADAFPADWLNDFEGIGLGVQGKTDSSAASATATAQPIHSSPQGQXXXXXXXXXXXXXXXXQHRDATIQNNETGEVLGEEPQILDNVDEGYGSGAAAAGMLMSA---GGRMVSWAANTPASLVDAATGAFRGDAHHA-VSRNAGGDLGN-GSAAAASTDADEL-----PLDWQGTLDMVGMA-EAETDTKGTSALAVAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGGGGDGQAGQGAXESGEHAAAAGQERGQRHVLPAPLRTVEVYLRPDVTWESVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRNVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACG 539
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1557 |
| Cds size | 1557 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11713.1094.1 >prot_S-dermatodea_contig11713.1094.1 ID=prot_S-dermatodea_contig11713.1094.1|Name=mRNA_S-dermatodea_contig11713.1094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=519bp
MTSAGSFVYGSDGRRKTSTDEQDIADFLSSIENDIAGAEAAGGARAAAPE
GISLRGGGTSPGMDLLFGPASPSTQGAEYGSDRALLLGDSEEGIDAAPGD
WLRDLESSSTEHRGDSSASLGVDQQATSRDDGGQPHQQQQKQQQQQRQRR
VEEEEEEVLGAEPEILDVAGYDDDDHHAGSSSSSYLHGSRHDMREQHAPS
SRHDARRSSAATANVDPFAGGRKARPGATQSPTTGMNEVASADEPLDWPG
TLDMLGMAADGQKAGSSSSTAPAVPASELPSMAPPAAREESFPDFVEIRD
PRRVSQFPKPDNVLAAKAAGRQGSGDAGAGPGQRQVLAAPLRTVEVYLRP
DVTWESVSDVYMAVMLSRGLVVRQQTEKSVTAEKAADGSGDWGTVKLTAG
VTRDKLRTLVMQFYADTRAPILSLAGTMARFSGRAGDELYTAIRDALVER
RMPLSMLATDAAEVSLDPHYIRDLVGMYAHENVVNLTRYALPLEEFVRGE
EERSARLEATLLPQYRATG back to topmRNA from alignment at S-dermatodea_contig11713:2015..6090+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11713.1094.1 ID=mRNA_S-dermatodea_contig11713.1094.1|Name=mRNA_S-dermatodea_contig11713.1094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4076bp|location=Sequence derived from alignment at S-dermatodea_contig11713:2015..6090+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTCCGCGGGGAGCTTCGTCTACGGCAGCGATGGAAGGAGAAAGAC
GAGCACCGACGAGCAGGACATAGCGGACTTCCTCTCTTCGATAGAGAACG
ACATCGCGGGCGCTGAGGCCGCCGGCGGTGCCCGCGCCGCCGCACCAGAA
GGCATCAGCCTTCGCGGTGGAGGCACCTCTCCCGGGATGGACCTGCTCTT
CGGGCCGGCATCGCCATCCACGCAAGGCGCCGAGTATGGCTCCGACAGAG
CGCTGCTGCTGGGGGACAGTGAAGAAGGAATTGATGCCGCACCAGGGGAC
TGGCTCAGGGATCTGGAGTCGAGCAGCACGGAGCACAGAGGAGATTCCTC
CGCATCGCTTGGAGTAGATCAGCAGGCCACAAGTCGAGACGATGGGGGGC
AGCCACACCAGCAGCAACAGAAGCAGCAGCAGCAGCAGCGGCAGCGCAGA
GTAGAGGAGGAGGAGGAGGAGGTCCTCGGCGCGGAGCCGGAAATTCTAGA
CGTAGCAGGTTACGATGATGATGACCACCACGCTGGCAGCAGCAGCAGCA
GCTATCTCCATGGCTCCCGGCACGACATGCGCGAACAACACGCCCCGTCG
TCGCGCCATGACGCCCGCAGAAGCAGCGCTGCAACTGCAAATGTTGACCC
CTTCGCGGGAGGTAGGAAAGCCCGACCGGGGGCAACACAGTCTCCAACTA
CAGGCATGAATGAGGTGGCGAGCGCGGATGAACCGCTGGACTGGCCTGGG
ACGCTGGATATGCTTGGCATGGCAGCGGACGGGCAAAAAGCGGGTTCTTC
GTCTTCGACCGCACCCGCTGTCCCCGCGTCAGAGCTGCCCAGCATGGCCC
CGCCTGCGGCCAGGGAGGAGAGCTTTCCCGACTTCGTGGAGATCCGTGAC
CCGCGCCGCGTGTCGCAGTTTCCCAAGCCCGACAATGTCCTCGCCGCGAA
GGCAGCTGGGAGGCAAGGGAGCGGTGATGCAGGGGCCGGCCCGGGACAGA
GGCAGGTGTTGGCGGCACCTCTGCGAACCGTCGAGGTGTACCTACGGCCT
GATGTGACTTGGGAATCCGTGTCCGATGTGTACATGGCGGTGATGCTCTC
TAGGGGTCTGGTTGTGCGCCAGCAAACCGAGAAGTCGGTGAGTCGATTGT
CTTCTGCCAGGATGTAGTGTATGTAGCGTACTTGTATTCTGATGTAGGGC
TCGACGCATGTAATTGTAATTGTATACCGTACAAAGTGTGATACTTCGAA
GTACGTTATTAGTGCCCCCGCTCTCATGTTGGCGGAAAGTTGAAGTTTGT
GGTGTGCCTTCGTGTGGTCGTGCGCTGTGCTCGCACGCCGTTCGGTTCGC
ACTGATCCCTGCAGCTAGCTCCGCCGCACGCCTCTCGAACGAACGTCGGG
GTGCTTCGTCGCTTTGTTGCCCAACGTATGTATGAAACCATATTGTGTTC
ACACACGGCGCCTCCGACTCGACTTGTACTCCTTCGATCGTGGCACTGGA
AGCCTTGCGGGGGGGGGGGCGGACATTTTACAGTGTGGTGCAGAATAAAC
GTATCACCCTTTGTCTGTGAACTATGCGTACGTGCACACAAACCAAGATG
CAGGCTGCTTTTATATAATAAAATAGAGCCCACAAAGTGCCAACCTCCAC
CCTTACACGACGCGCATATTAGAGGGCCCACACTACCTCCTCGCACACGA
CTACCCTGAGAACTCTCCTCGGGTGCATCGGAGCTCCACGGAATCGCGGA
TCCTACATACTTTCGGGTGCTCAAGCAACCGTCGGCTTTCCCACCGGGGA
AGGATTGCAATCCTCCCCGGGGGGGCAAAGGGGCACGCCCCACTTGTAAC
GTTTCTATTGATTGTATCTCCGCCGCTTGCCGGATACCCGACTACCCACG
ATCCCTGGTTGCTACGGAGGAACCCTCGCACCCGCAGCCCGACTCCGGAC
TCTGGACCAACCTCTGGCGTTCCACACATTTTCCTGCATTCGCATACATT
TTATTTATGCATGTTTTTATCCTTCTTGTGTCAGCTGGGTTGGCATTGGC
CGTACAGCGTAGTACCAGGTATCGTATAACAGGGTGGCGATGATGAGCCT
GTCCCCAAGAGAGGCATACTATAATAGTTCGACTCCGACTCCTCTTGTGT
GCCTGGTGTGTCAGTTGTTATGTTTTTTACTAAATAGGGTGTTGTACGGT
ACTTCCAGACAGTTGTTTTTGTACAAGTACTTTGTGATGTCGTGTTTTCC
TTTTATTATCTGGGCATCTGAGAACGAGTCGGGTCGAACTTCACCGATCG
GCTGTATGTGTGAAAACCTATCAATATATTCATCTATTTAACGAACTGTC
CTCGTTGCGCGCATTTCCAGTTCCATATGTGTTATGTGATGATATGTCCA
AATGCTGTGTCTCCGTCTTCTTGTGCTACACACTTCAGCATTATGCTCAG
AAGCATACAAAGATCAGCCTCCATTTCATACATATATGTTGGTACAAATT
TCACGCTAGACATGTGTGCATTATATTCCATCTATCTTCAGAATTATTTG
CAACCTCGCTGATTTGAGCTTGTTCCATGTTCGCCACAATCACACGCGGT
CAATCGAGCAACGAAACACTGCTGTTGCATCACACCATCACCGGCGACGC
GATTTCTCGTGATTTCTCGTGGTGCAACTCACGATCGCCTGCCGTGATTT
TTGTCGCGGGAAGGTGACAGCGGAAAAGGCGGCGGACGGGTCGGGCGACT
GGGGCACGGTGAAACTGACGGCGGGAGTAACCCGGGACAAGCTCCGGACG
TTGGTCATGCAATTCTACGCCGACACAAGGGTGGGTTGGGTAGGGTTCGC
AACTACGTGAACCGGGCGCTATTTGCGGTTGGGCGGTACGTACATAGTAG
CCTGGAGGGTGTTTTGTGGCGGCCTTTGGGCGCCGCGCACAATTTAGTGG
TGCGATGGTCAAGTTTCGTGCGTGCACCAGTGACGCCCGACTCGCTGCGT
TTTCCAGAGACTGCTGCTTGTTTCGGGGACGAACGGATGCACGGGCGTAT
ACAGGGGGAAGTGCTTTACGCTTTCACGACGCCTTGAGTCCTCGATTGCT
GTAGACGGACTTGTGGCCTTGGCGTGAACCCTTCATGCCGCTATAATACC
TGTCCGCGACTCGAGAACCTGGCCGCCTAAAGCTTGAAATACCGACCATT
CTCGATTGCCAGCAGGCTCCAATCCTCAGCCTCGCGGGGACGATGGCTCG
CTTCTCCGGGCGTGCGGGCGACGAGCTGTACACTGCGATTCGTGACGCGC
TCGTGGAAAGACGAATGCCCCTTAGCATGTTGGCGACGGATGCCGCAGAG
GTGTCGCTGGATCCCCACTACATCCGGTGTGTGCAGGGCCCTTGCCTTTT
GGGGTAGATATGTGGAGGCGGGCGTGTAGCTGCTGTTCTGTACGTGGCGT
CCCAGTCGCGTCGCGCATGCGGCCGCTCTTGGCTGTTAATATGGTTTGGG
TAACATTGCTCTCACTCTGAGTGGCGGTCCTCAACGGCTGGGAGAGATTT
GTCAAAATTTCGCTCTGTCGCCTCTGTTTTGTGACGCTAAATAATCGGTG
AGCGTGCGAAATTTGGGGATACGGTCCCCGTCTCAGCGATCCCGCGACGC
TCAAGGAAACGCATGCTACGCACTGCGCACCGTCGTGCTCCGTGGACTTG
CCGCGCCTGAGACATTCCGGCAGGAGGAGCAGCTGAACGGGCAACGTGTG
TCGGCGCGCCACCGAACCTCTCGACTTCGGATAAGTGCTTCAACTCTTTG
TGGCCCAAGGGAAGGGTTGATACTTCGCTAGACAACACCTGTCGATAAGA
CCATCGAAATCGCCCCCGTATACCCGCCGGATTGTGACTCCGCGTACCTT
TCTTTTTTTCTCTCTCTCGCCCTCTCCGCCGCAGTGATCTCGTGGGCATG
TACGCGCACGAGAACGTGGTGAACCTCACCCGCTACGCCCTACCCCTCGA
GGAGTTCGTGAGGGGGGAGGAGGAGCGGTCGGCGCGGCTGGAAGCCACCC
TGCTCCCGCAGTATCGCGCGACCGGT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11713:2015..6090+ >mRNA_S-dermatodea_contig11713.1094.1 ID=mRNA_S-dermatodea_contig11713.1094.1|Name=mRNA_S-dermatodea_contig11713.1094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3114bp|location=Sequence derived from alignment at S-dermatodea_contig11713:2015..6090+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTCCGCGGGGAGCTTCGTCTACGGCAGCGATGGAAGGAGAAAGAC
GAGCACCGACGAGCAGGACATAGCGGACTTCCTCTCTTCGATAGAGAACG
ACATCGCGGGCGCTGAGGCCGCCGGCGGTGCCCGCGCCGCCGCACCAGAA
GGCATCAGCCTTCGCGGTGGAGGCACCTCTCCCGGGATGGACCTGCTCTT
CGGGCCGGCATCGCCATCCACGCAAGGCGCCGAGTATGGCTCCGACAGAG
CGCTGCTGCTGGGGGACAGTGAAGAAGGAATTGATGCCGCACCAGGGGAC
TGGCTCAGGGATCTGGAGTCGAGCAGCACGGAGCACAGAGGAGATTCCTC
CGCATCGCTTGGAGTAGATCAGCAGGCCACAAGTCGAGACGATGGGGGGC
AGCCACACCAGCAGCAACAGAAGCAGCAGCAGCAGCAGCGGCAGCGCAGA
GTAGAGGAGGAGGAGGAGGAGGTCCTCGGCGCGGAGCCGGAAATTCTAGA
CGTAGCAGGTTACGATGATGATGACCACCACGCTGGCAGCAGCAGCAGCA
GCTATCTCCATGGCTCCCGGCACGACATGCGCGAACAACACGCCCCGTCG
TCGCGCCATGACGCCCGCAGAAGCAGCGCTGCAACTGCAAATGTTGACCC
CTTCGCGGGAGGTAGGAAAGCCCGACCGGGGGCAACACAGTCTCCAACTA
CAGGCATGAATGAGGTGGCGAGCGCGGATGAACCGCTGGACTGGCCTGGG
ACGCTGGATATGCTTGGCATGGCAGCGGACGGGCAAAAAGCGGGTTCTTC
GTCTTCGACCGCACCCGCTGTCCCCGCGTCAGAGCTGCCCAGCATGGCCC
CGCCTGCGGCCAGGGAGGAGAGCTTTCCCGACTTCGTGGAGATCCGTGAC
CCGCGCCGCGTGTCGCAGTTTCCCAAGCCCGACAATGTCCTCGCCGCGAA
GGCAGCTGGGAGGCAAGGGAGCGGTGATGCAGGGGCCGGCCCGGGACAGA
GGCAGGTGTTGGCGGCACCTCTGCGAACCGTCGAGGTGTACCTACGGCCT
GATGTGACTTGGGAATCCGTGTCCGATGTGTACATGGCGGTGATGCTCTC
TAGGGGTCTGGTTGTGCGCCAGCAAACCGAGAAGTCGATGACGTCCGCGG
GGAGCTTCGTCTACGGCAGCGATGGAAGGAGAAAGACGAGCACCGACGAG
CAGGACATAGCGGACTTCCTCTCTTCGATAGAGAACGACATCGCGGGCGC
TGAGGCCGCCGGCGGTGCCCGCGCCGCCGCACCAGAAGGCATCAGCCTTC
GCGGTGGAGGCACCTCTCCCGGGATGGACCTGCTCTTCGGGCCGGCATCG
CCATCCACGCAAGGCGCCGAGTATGGCTCCGACAGAGCGCTGCTGCTGGG
GGACAGTGAAGAAGGAATTGATGCCGCACCAGGGGACTGGCTCAGGGATC
TGGAGTCGAGCAGCACGGAGCACAGAGGAGATTCCTCCGCATCGCTTGGA
GTAGATCAGCAGGCCACAAGTCGAGACGATGGGGGGCAGCCACACCAGCA
GCAACAGAAGCAGCAGCAGCAGCAGCGGCAGCGCAGAGTAGAGGAGGAGG
AGGAGGAGGTCCTCGGCGCGGAGCCGGAAATTCTAGACGTAGCAGGTTAC
GATGATGATGACCACCACGCTGGCAGCAGCAGCAGCAGCTATCTCCATGG
CTCCCGGCACGACATGCGCGAACAACACGCCCCGTCGTCGCGCCATGACG
CCCGCAGAAGCAGCGCTGCAACTGCAAATGTTGACCCCTTCGCGGGAGGT
AGGAAAGCCCGACCGGGGGCAACACAGTCTCCAACTACAGGCATGAATGA
GGTGGCGAGCGCGGATGAACCGCTGGACTGGCCTGGGACGCTGGATATGC
TTGGCATGGCAGCGGACGGGCAAAAAGCGGGTTCTTCGTCTTCGACCGCA
CCCGCTGTCCCCGCGTCAGAGCTGCCCAGCATGGCCCCGCCTGCGGCCAG
GGAGGAGAGCTTTCCCGACTTCGTGGAGATCCGTGACCCGCGCCGCGTGT
CGCAGTTTCCCAAGCCCGACAATGTCCTCGCCGCGAAGGCAGCTGGGAGG
CAAGGGAGCGGTGATGCAGGGGCCGGCCCGGGACAGAGGCAGGTGTTGGC
GGCACCTCTGCGAACCGTCGAGGTGTACCTACGGCCTGATGTGACTTGGG
AATCCGTGTCCGATGTGTACATGGCGGTGATGCTCTCTAGGGGTCTGGTT
GTGCGCCAGCAAACCGAGAAGTCGGTGACAGCGGAAAAGGCGGCGGACGG
GTCGGGCGACTGGGGCACGGTGAAACTGACGGCGGGAGTAACCCGGGACA
AGCTCCGGACGTTGGTCATGCAATTCTACGCCGACACAAGGGTGACAGCG
GAAAAGGCGGCGGACGGGTCGGGCGACTGGGGCACGGTGAAACTGACGGC
GGGAGTAACCCGGGACAAGCTCCGGACGTTGGTCATGCAATTCTACGCCG
ACACAAGGGCTCCAATCCTCAGCCTCGCGGGGACGATGGCTCGCTTCTCC
GGGCGTGCGGGCGACGAGCTGTACACTGCGATTCGTGACGCGCTCGTGGA
AAGACGAATGCCCCTTAGCATGTTGGCGACGGATGCCGCAGAGGTGTCGC
TGGATCCCCACTACATCCGGCTCCAATCCTCAGCCTCGCGGGGACGATGG
CTCGCTTCTCCGGGCGTGCGGGCGACGAGCTGTACACTGCGATTCGTGAC
GCGCTCGTGGAAAGACGAATGCCCCTTAGCATGTTGGCGACGGATGCCGC
AGAGGTGTCGCTGGATCCCCACTACATCCGTGATCTCGTGGGCATGTACG
CGCACGAGAACGTGGTGAACCTCACCCGCTACGCCCTACCCCTCGAGGAG
TTCGTGAGGGGGGAGGAGGAGCGGTCGGCGCGGCTGGAAGCCACCCTGCT
CCCGCAGTATCGCGCGACCGGTTGATCTCGTGGGCATGTACGCGCACGAG
AACGTGGTGAACCTCACCCGCTACGCCCTACCCCTCGAGGAGTTCGTGAG
GGGGGAGGAGGAGCGGTCGGCGCGGCTGGAAGCCACCCTGCTCCCGCAGT
ATCGCGCGACCGGT back to top
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