mRNA_S-dermatodea_contig1169.1074.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1169.1074.1
Unique NamemRNA_S-dermatodea_contig1169.1074.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1169.1074.1 vs. uniprot
Match: A0A6H5KQ23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ23_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.960e-35
Identity = 101/227 (44.49%), Postives = 119/227 (52.42%), Query Frame = 1 
Query:    1 MFKRRSSKDLSAKIGYDHVNAKPSKKLDPAAQQA---ASSSTAAPVANVTLHSHQPHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISASNGESPLASLKALPPQGGGPSTSSQLVPSALSSRPPASRSATSGSVSKHAVPAEPPAKSLVIGEGVLFEGTTEGCAAAVVGGRMKGTVKSRRLEITRAGKMEGTGIAETAEIAGLFEGNLTVTKALKV 672
            MF+RRSSK+LSAKIGYDHVN K SK    ++  +   A+S+  APVA++       H                                        SA+   SPLA+LK LPP                                     AEPP+ SLVIGEGVLFEG TEGCAAAVVGG++ GTVKS+RLE+TRAGKMEGT + E AEIAG FEGNLTVTKALK+
Sbjct:    1 MFRRRSSKELSAKIGYDHVNGKASKNTSVSSMSSSTPAASNAVAPVASIPPPGGHLHHKQGSCSPGSSSSRKTTGMPSPEADSGVDP----------SATERPSPLAALKPLPPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV--AEPPSNSLVIGEGVLFEGATEGCAAAVVGGKLVGTVKSKRLEVTRAGKMEGTAVVEMAEIAGAFEGNLTVTKALKI 215
[Close]
BLAST of mRNA_S-dermatodea_contig1169.1074.1 vs. uniprot
Match: A0A2E3XDE6_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XDE6_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 2.030e-7
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  466 LVIGEGVLFEGTTEGCAAAVVGGRMKGTVKSRRLEITRAGKMEGTGIAETAEIAGLFEGNLTVTKALKV 672
            + IG G+  +G    CA  V+ G ++GTV+ ++LEI   G  +GT   ETAEI G+F+G+L V+  LK+
Sbjct:   41 MTIGPGIEMKGEISKCAVLVIEGEVEGTVQCQQLEILSRGVFKGTAQVETAEIEGIFDGDLNVSGLLKI 109
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1169.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ23_9PHAE1.960e-3544.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E3XDE6_9PROT2.030e-742.03Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1169contigS-dermatodea_contig1169:3584..4330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size684
Cds size684
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924214.0844598-CDS-S-dermatodea_contig1169:3583..38691622924214.0844598-CDS-S-dermatodea_contig1169:3583..3869Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1169 3584..3869 -
1694079097.9388719-CDS-S-dermatodea_contig1169:3583..38691694079097.9388719-CDS-S-dermatodea_contig1169:3583..3869Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1169 3584..3869 -
1622924214.0950618-CDS-S-dermatodea_contig1169:3932..43301622924214.0950618-CDS-S-dermatodea_contig1169:3932..4330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1169 3933..4330 -
1694079097.9469054-CDS-S-dermatodea_contig1169:3932..43301694079097.9469054-CDS-S-dermatodea_contig1169:3932..4330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1169 3933..4330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1169.1074.1prot_S-dermatodea_contig1169.1074.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1169 3584..4330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1169.1074.1

>prot_S-dermatodea_contig1169.1074.1 ID=prot_S-dermatodea_contig1169.1074.1|Name=mRNA_S-dermatodea_contig1169.1074.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=228bp
MFKRRSSKDLSAKIGYDHVNAKPSKKLDPAAQQAASSSTAAPVANVTLHS
HQPHSSSSSSSSSSRKTTATTSPDQRGPGAGGGNEHHQGGGSSISASNGE
SPLASLKALPPQGGGPSTSSQLVPSALSSRPPASRSATSGSVSKHAVPAE
PPAKSLVIGEGVLFEGTTEGCAAAVVGGRMKGTVKSRRLEITRAGKMEGT
GIAETAEIAGLFEGNLTVTKALKVSFG*
back to top

mRNA from alignment at S-dermatodea_contig1169:3584..4330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1169.1074.1 ID=mRNA_S-dermatodea_contig1169.1074.1|Name=mRNA_S-dermatodea_contig1169.1074.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at S-dermatodea_contig1169:3584..4330- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCAAGCGACGGTCATCAAAGGACCTCTCCGCGAAGATCGGTTACGA
TCACGTGAACGCGAAGCCTTCCAAGAAGCTAGACCCGGCGGCACAGCAGG
CCGCGTCCTCGTCGACCGCGGCGCCGGTGGCGAACGTCACGCTCCACAGC
CATCAGCCTCACTCCTCGTCCTCCTCATCGTCATCCTCCTCCCGAAAAAC
CACCGCGACCACATCTCCCGACCAGCGAGGGCCGGGAGCAGGGGGAGGAA
ACGAGCACCACCAGGGAGGGGGATCTTCGATTTCCGCATCAAATGGCGAA
TCTCCGCTCGCGTCGCTCAAGGCGCTGCCGCCGCAGGGCGGCGGCCCGTC
TACCTCCTCGCAGCTGGTGCCAAGCGCTCTCAGCAGCAGGCCTCCCGCGT
CGGCTGCTCCCTCGGCGGCCGCTTCGGCCGCTGGCGGTGGAGCCCCGCTC
CCGAGGGGTAGCTCGCGATCCGCGACGTCGGGGTCGGTCTCGAAGCACGC
TGTGCCCGCCGAGCCTCCTGCGAAGAGCTTGGTGATCGGAGAAGGGGTAT
TGTTCGAGGGCACCACGGAGGGGTGCGCTGCGGCCGTGGTTGGGGGCCGA
ATGAAGGGGACCGTGAAGTCGCGGAGGCTGGAGATCACGCGCGCGGGCAA
GATGGAGGGTACGGGCATCGCGGAGACTGCCGAGATCGCGGGGCTCTTCG
AGGGTAACCTCACTGTCACGAAGGCGCTAAAGGTGAGTTTTGGCTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1169:3584..4330-

>mRNA_S-dermatodea_contig1169.1074.1 ID=mRNA_S-dermatodea_contig1169.1074.1|Name=mRNA_S-dermatodea_contig1169.1074.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at S-dermatodea_contig1169:3584..4330- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCAAGCGACGGTCATCAAAGGACCTCTCCGCGAAGATCGGTTACGA
TCACGTGAACGCGAAGCCTTCCAAGAAGCTAGACCCGGCGGCACAGCAGG
CCGCGTCCTCGTCGACCGCGGCGCCGGTGGCGAACGTCACGCTCCACAGC
CATCAGCCTCACTCCTCGTCCTCCTCATCGTCATCCTCCTCCCGAAAAAC
CACCGCGACCACATCTCCCGACCAGCGAGGGCCGGGAGCAGGGGGAGGAA
ACGAGCACCACCAGGGAGGGGGATCTTCGATTTCCGCATCAAATGGCGAA
TCTCCGCTCGCGTCGCTCAAGGCGCTGCCGCCGCAGGGCGGCGGCCCGTC
TACCTCCTCGCAGCTGGTGCCAAGCGCTCTCAGCAGCAGGCCTCCCGCAT
GTTCAAGCGACGGTCATCAAAGGACCTCTCCGCGAAGATCGGTTACGATC
ACGTGAACGCGAAGCCTTCCAAGAAGCTAGACCCGGCGGCACAGCAGGCC
GCGTCCTCGTCGACCGCGGCGCCGGTGGCGAACGTCACGCTCCACAGCCA
TCAGCCTCACTCCTCGTCCTCCTCATCGTCATCCTCCTCCCGAAAAACCA
CCGCGACCACATCTCCCGACCAGCGAGGGCCGGGAGCAGGGGGAGGAAAC
GAGCACCACCAGGGAGGGGGATCTTCGATTTCCGCATCAAATGGCGAATC
TCCGCTCGCGTCGCTCAAGGCGCTGCCGCCGCAGGGCGGCGGCCCGTCTA
CCTCCTCGCAGCTGGTGCCAAGCGCTCTCAGCAGCAGGCCTCCCGCCTCG
CGATCCGCGACGTCGGGGTCGGTCTCGAAGCACGCTGTGCCCGCCGAGCC
TCCTGCGAAGAGCTTGGTGATCGGAGAAGGGGTATTGTTCGAGGGCACCA
CGGAGGGGTGCGCTGCGGCCGTGGTTGGGGGCCGAATGAAGGGGACCGTG
AAGTCGCGGAGGCTGGAGATCACGCGCGCGGGCAAGATGGAGGGTACGGG
CATCGCGGAGACTGCCGAGATCGCGGGGCTCTTCGAGGGTAACCTCACTG
TCACGAAGGCGCTAAAGGTGAGTTTTGGCTAGCTCGCGATCCGCGACGTC
GGGGTCGGTCTCGAAGCACGCTGTGCCCGCCGAGCCTCCTGCGAAGAGCT
TGGTGATCGGAGAAGGGGTATTGTTCGAGGGCACCACGGAGGGGTGCGCT
GCGGCCGTGGTTGGGGGCCGAATGAAGGGGACCGTGAAGTCGCGGAGGCT
GGAGATCACGCGCGCGGGCAAGATGGAGGGTACGGGCATCGCGGAGACTG
CCGAGATCGCGGGGCTCTTCGAGGGTAACCTCACTGTCACGAAGGCGCTA
AAGGTGAGTTTTGGCTAG
back to top