mRNA_S-dermatodea_contig11556.995.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11556.995.1
Unique NamemRNA_S-dermatodea_contig11556.995.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: D7G1Y6_ECTSI (Polyketide Synthase III n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y6_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 2.060e-68
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 VCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLAVLDNRSWLV 333
            VCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVN+AILHAIFGDGCAVAVV G TARNA+PGSLAVLDNRSWLV
Sbjct:   66 VCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 176          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: A0A6H5L6U2_9PHAE (PKS III protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U2_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 8.670e-67
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 VCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLAVLDNRSWLV 333
            VCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVN+AILHAIFGDGCAVAVV G TARNA+PGSLAVLDNRSWLV
Sbjct:  207 VCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNDAILHAIFGDGCAVAVVAGRTARNAEPGSLAVLDNRSWLV 317          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: A0A8J2SDG4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDG4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.610e-30
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKP-GSLAVLDNRSWLV 333
            GPGLD  L+K++GL  SV+R ++ F GC A +NG R+A+ YA +HPG+LAL+V VE+ S+H    D VN+AILHAIF DGCA AV+ G    +AK  G   ++D   WL+
Sbjct:  170 GPGLDCSLIKTLGLERSVDRSLIGFMGCAAAMNGFRVANDYAASHPGKLALMVCVEISSVHTTFDDNVNDAILHAIFADGCAAAVISGEKPGSAKAKGKFGIVDTHGWLM 279          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: A0A6V1RDH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDH2_HETAK)

HSP 1 Score: 120 bits (300), Expect = 4.590e-30
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLAVLDNRSWLV 333
            GPGLD EL+KS+GL+  V+R ++ F GC A +NG R+ + Y   +PG+LALL  VEL S H    +  N++ILHAIFGDG A AV+ G T   A PG+LA++D+ +WL+
Sbjct:  164 GPGLDCELIKSLGLSRGVDRSLIGFMGCAAAMNGFRVCNDYVKANPGKLALLCCVELSSPHTTFNNDTNDSILHAIFGDGAAAAVISGETKETAAPGALAIVDDHAWLM 272          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: D8LJ35_ECTSI (Polyketide Synthase III n=3 Tax=Phaeophyceae TaxID=2870 RepID=D8LJ35_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.780e-30
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLAVLDNRSWLV 333
            GPGLD EL+K++GL  SV+R ++ F GC A +NG R A+ Y   +PG+ AL++ VEL S+H    D +N+AILHAIF DGCA AV+ G        G+LA++DN +WL+
Sbjct:  167 GPGLDCELIKNLGLTRSVDRTLIGFMGCAAAMNGFRNANDYVTANPGKYALMICVELSSVHTTFDDNINDAILHAIFADGCAAAVLKGARKSECPKGTLAIVDNHAWLM 275          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: F0Y6J5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J5_AURAN)

HSP 1 Score: 117 bits (292), Expect = 1.010e-29
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLA------VLDNRSWLV 333
            GPGLD EL+K++GL   V+R ++ F GC A +NG R+A+ +A++HPG++AL+V VE+ S+H    D VN+AILHAIF DGCA AV+ G      KPGS A      ++D   WL+
Sbjct:   49 GPGLDAELIKTLGLWRGVDRSLIGFMGCAAAMNGFRVANDFAMSHPGKMALMVCVEISSVHTTFDDNVNDAILHAIFADGCAAAVISG-----EKPGSAAAKGKFGIVDTHGWLM 158          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: A0A836CMD8_9STRA (Polyketide synthase III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.440e-28
Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLAVLDNRSWLV 333
            GPGLD E++K + +  SV+R ++ F GC A +NG R+A+ Y   HPG+ AL++ VEL S+H    D +N+AILHAIF DGCA  V+ G TA +A  G+LA++D+ + L+
Sbjct:  175 GPGLDCEIIKRLRMKRSVDRSLIGFMGCAAAMNGFRIANDYVRCHPGKFALMLCVELSSVHTTFEDNINDAILHAIFADGCAACVLSGETASSAAKGTLAIVDDHAELM 283          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: A0A7S2V1U6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1U6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.070e-27
Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLAVLDNRSWLV 333
            GPGLD EL+  +GL  SV+R ++ F GC A +NG R+A+ Y   + G+ ALLV VE+ S+H    D +N++ILHAIF DGCA AV+ G T  +   G+LA++D+ +WL+
Sbjct:  206 GPGLDCELINQLGLARSVDRSLIGFMGCAAAMNGFRIANDYCKANAGKYALLVCVEISSVHTTFDDDINDSILHAIFADGCAAAVLSGETKDSIPKGTLAIVDDHAWLM 314          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: A0A7S3NPW3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPW3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.030e-27
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLT--ARNAKPGSLAVLDNRSWLV 333
            GPGLD EL+K++GL+ SV+R ++ F GC A +NG R+A+ YAV +PG+LAL+  VE+ S+H    D VN+AILHAIF DGCA AV+ G    A  AK G   ++D  + L+
Sbjct:  165 GPGLDCELIKTLGLSRSVDRSLIGFMGCAAAMNGFRVANDYAVANPGKLALMCCVEISSVHTTFDDNVNDAILHAIFADGCAAAVISGEKPGAPRAK-GKFGIIDTHACLM 274          
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Match: A0A7S2WPY4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPY4_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.070e-27
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    7 GPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGRLALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGSLAVLDNRSWLV 333
            GPGLD  +++ IGL+  V+R ++ F GC A +NG R+   Y  +H  + AL+  VEL S+H    D +N+AILHAIFGDGCA AV+GG TA+ A  G  A++D+ +WL+
Sbjct:  199 GPGLDCHIIQEIGLSRGVDRALIGFMGCAAAMNGFRVGMDYVRSHD-KAALVCCVELSSVHTTFDDNINDAILHAIFGDGCAAAVLGGRTAKTAPKGGFAIVDDHAWLM 306          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11556.995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y6_ECTSI2.060e-6896.40Polyketide Synthase III n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6U2_9PHAE8.670e-6796.40PKS III protein n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
A0A8J2SDG4_9STRA3.610e-3050.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V1RDH2_HETAK4.590e-3050.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LJ35_ECTSI4.780e-3049.54Polyketide Synthase III n=3 Tax=Phaeophyceae TaxID... [more]
F0Y6J5_AURAN1.010e-2948.70Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CMD8_9STRA6.440e-2847.71Polyketide synthase III n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1U6_9STRA1.070e-2747.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3NPW3_9STRA5.030e-2750.45Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2WPY4_9STRA5.070e-2747.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11556contigS-dermatodea_contig11556:339..4113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue9.6e-26
Seed eggNOG ortholog2880.D8LJ35
KEGG rclassRC00004,RC02726,RC02970
KEGG koko:K00660,ko:K13234,ko:K21384
KEGG ReactionR01613,R06568,R07987,R07988,R07989,R08808,R08810
KEGG Pathwayko00941,ko00945,ko01100,ko01110,ko04712,map00941,map00945,map01100,map01110,map04712
KEGG ModuleM00137
GOsGO:0000325,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006810,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009314,GO:0009411,GO:0009416,GO:0009611,GO:0009628,GO:0009629,GO:0009705,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009812,GO:0009813,GO:0009889,GO:0009914,GO:0009926,GO:0009962,GO:0010033,GO:0010224,GO:0010817,GO:0012505,GO:0016020,GO:0019222,GO:0031090,GO:0031537,GO:0031540,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0098588,GO:0098805,GO:1901576,GO:1901700
EggNOG free text desc.naringenin-chalcone synthase activity
EggNOG OGs2S4A6@2759,COG3424@1
EC2.3.1.177,2.3.1.208,2.3.1.217,2.3.1.74
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01008
Hectar predicted targeting categoryother localisation
Exons3
Model size333
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11556.995.1prot_S-dermatodea_contig11556.995.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11556 339..4113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.1194003-CDS-S-dermatodea_contig11556:338..4641622924208.1194003-CDS-S-dermatodea_contig11556:338..464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11556 339..464 +
1694079093.5639396-CDS-S-dermatodea_contig11556:338..4641694079093.5639396-CDS-S-dermatodea_contig11556:338..464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11556 339..464 +
1622924208.1286979-CDS-S-dermatodea_contig11556:2103..21751622924208.1286979-CDS-S-dermatodea_contig11556:2103..2175Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11556 2104..2175 +
1694079093.586592-CDS-S-dermatodea_contig11556:2103..21751694079093.586592-CDS-S-dermatodea_contig11556:2103..2175Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11556 2104..2175 +
1622924208.136891-CDS-S-dermatodea_contig11556:3978..41131622924208.136891-CDS-S-dermatodea_contig11556:3978..4113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11556 3979..4113 +
1694079093.602749-CDS-S-dermatodea_contig11556:3978..41131694079093.602749-CDS-S-dermatodea_contig11556:3978..4113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11556 3979..4113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11556.995.1

>prot_S-dermatodea_contig11556.995.1 ID=prot_S-dermatodea_contig11556.995.1|Name=mRNA_S-dermatodea_contig11556.995.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
VCGPGLDGELVKSIGLNHSVEREVVSFQGCGAGINGLRLASQYAVTHPGR
LALLVSVELPSLHMHKGDTVNEAILHAIFGDGCAVAVVGGLTARNAKPGS
LAVLDNRSWLV
back to top

mRNA from alignment at S-dermatodea_contig11556:339..4113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11556.995.1 ID=mRNA_S-dermatodea_contig11556.995.1|Name=mRNA_S-dermatodea_contig11556.995.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3775bp|location=Sequence derived from alignment at S-dermatodea_contig11556:339..4113+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTGCGGACCCGGGCTGGACGGGGAGTTGGTGAAGAGCATCGGACTTAA CCACTCGGTGGAGAGAGAGGTGGTATCTTTTCAGGGCTGCGGAGCGGGGA TCAACGGCCTCCGACTCGCATCACAGGTGTGTGTACGCGCCCGATTTTGT TTTTTTTTTCGTTTTTTTTCTTCGTTTTCGGCGTTCGGTGTTTTGTTTTT ATTAAAAAACGTCATGTAGTTCAGTTCACCTGTACATCCCTAACACTAAC TCACGGGCACACTAATTATTAGTATAGTTTCAGGGGAAATCGAGAGTAGG TACTGTACGTCCTTTAATCTCTCAGTAAGGCATATATATGTGCAGGGGGG GACTATAGGTGTACAGTTGAACTAGTGTTTATACATCGCGCGGCAAGAAA AACACCATCTCCAAATCGTGAGTCGTCGTGAATCCCCACCTATGTGTGTA CCGGCGGTCAAGTATCCCACCAGTGATTCTGCACATGTGCTACTATTTGG GTATGGGGAGACTAGACATTCCAAGCGGGAGTCTAGCGGCTGTATAGTAT ATACTATACACTGCTGTTGTTGTAGATGGCCCATGTTGTGGTGCGGAAGC GTTCGGTATTTCTGTTTTGGCGTTCGGTGTTTCTGTGTTGGCCTTCAGTA GTTTTGTTTTAGCGTTTTGGCGTTTTGGCGGGGTTTTTTTTCGTTCTGTG TGGAGATCAAATCCGCCACCGCCGCCGCAGTTTTCGAATTTAAGGTTCGG GAGGTGTGTGCGCGCGAATTTGTCTTTCCTTCCAGCTGCAGCCACCAGCA CACGGGCTGACCTCCCGCCGTAGATCCACGTTTTTAAACCTTTAATGATT TGCACACCCTGGACAAACATGCAAATTAATTTTCGGTTAGTGTAATTGTG TAGTGGAGAAAATATTGGTGTCGGGCGGGCCGGGCCGGTCGTGGTCGTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTT TCCCCTTTTTTTTCCTTTGGTTTTTTTTTTTCTTTTTGTTTTGTCCTTCC CCCTCTTTTTCCCTTTTTNNNNNNNNNNTTCTCTCTTGTGTTTTTTTTTT TTTTTTTTTTCCTGTTCCGTTCTTGTTCTTTTTTTTTTTTTTTTTTTTTT TTTTTGTGGTCACGATGGATCATCCCATCTCTCCCCCCGGTTCTCACCTT GGATTTTTATTGCGCATTGGGTTCGGCACTCCCGCAGCTCTCGCCGATTT ATCGGATTTTTGGTTGCATGTGTTAAAATCAACCAATCAATCAATCAATC AATCAATCACATTATTATTACTAATACTTTTTTGTTTTCGCTCGCATGCG ATAGACCAGCAGCTATGTTCGAAGGGCATTTGGTTAGCAGTCAATGAGTT GCTCTACTTTTAGACTCCGCATTTGCTTGGGGGAGCAAATGAGCTCCTAT ACACTATTTGTGTTGGCACGGTTTGGGATCCTTACGATAACATTCAGTTG GTGTGCGCCGGCATGCGCTCCGCTCCACACGAGCAGAGTGCACGCTCAGT TGGTGTCGTAATCGCAGCCATGCACAAGTTATGCCCAGGCTGATCGGTAT GACCTGCCCGGCCGATGTCGGTGACGGTTTTTAGACGCCCATCGGCACTT CCTAGATCCCATGCACATGTTCACCTTGAGCTGCTTGATCGGTGTAATCT ATAATTGATGCACGCCATACCGTCCACCCGATGTTTTATTTCTTCTTCTT TTTCTATTCCGGCAGTACGCGGTGACGCACCCTGGGCGGCTAGCCCTTCT CGTCTCGGTGGAACTCCCTTCTCTGCACATGCACAAGGTGATTTGACTCT CGGACCCTCCTGAGTTTAATTAAGTGGACCAGATTGGTTGTGTTCACTGC TGTACAGTATACAAGTATGTGTGTGTGTGTTTGATTGTTCATGTCCTTCT CTATTAATGTGGTAATATTTTTTGTTATTTTCGCGTCGAGGACGGCAATT CAGGAAGCAAAAAATATATATTTTTCGTGCTCGGTTTCTGAAAAGTTTAA ATGTCGCCGAATGGGTTGGGCTACAGAGAAAGGGGAGGGGGGGGCGTGGG AATGGCAAAATGCATTTAACAGAGCAATCTCGAGAATGAGTCCGGGGAAT CGAGATGAGTCTCGAACCTGCTCGCGGTCTCGATTAAATTTTCCAAATAG TTGCCACCGCGATAACTATAATAGATATTGGGGGAGTTTGGACGTGTAGC GCACCAGGTACCACATCACACGCTTGACGTGGAGATCACCGTGTTCGCGG GCATGCCCCTTCTCGCACCCACGGTAGCCTACGCCCCCACCGCGCTGCCA GAGAAGAGTAGAGCGCGGCTGTTGGCGTGTGTGTGTTGTCGATGAGAGGC ATGGTGATGGCGGGCAGCAGTGGTCGGTTGGGTTTCAGAAAATCACAAAA CAAATCAACGCTCTCTGTCTGTCAAATACAAAGTACAGCAGCAGCAGCAG CAGCATTTATTGCAGCAACACTGCTGCTACGAGTGGAGCGAAAAATATTA ACAAAAATATTAACAGGGGAACCATAGCAGTAAAAATATTAACAAAAATA TTGACACAAATATTAGCAAAAATATTAACAGTTCCATCGAGACAGCGATA GGCACACAGAATCACCGCCATCTAGCTTCGTGTGAGCGGTGTGCTCGGCG CCTCCCTCGCCAATTATGCCCTGCGTGCATGCACCCTGCACTCTGTGCTC GGAGCACCATGCATCGGTGTATGACCAGGGTGTGCCCTGTTGTGTGGGGT ACCCCACCATGTATCGGTATATGGCCAGGGCATACCCTGTTGTGTCGGCC ACCCTTGCTTGTTTTATAAAACACCAAATCCAGGTCACATGTACAGCCCT CACTCACTGGCACACTCCAGGGGAGACTGAAAGTAGTTTGTTTTGTAGGA GACAAGCCATGGTCCGGCTGTGATATGCGACAGCTTGAAACGATTACTAC TCTAGGTCGTTCGTGAACCCCCCCCCCCCCCTCCCCCCCCGGCATATCGC TCCTTCCCGGCATTATGGCGATGCGTTCCAAGCTCGTGTGGATACGACGT GCGTTTAACATAAATATAAATACCCCCCCCTGGGAGATAATAACTGTCCC GAAAAGGCGATAATTGAGGCATGTAGAATAGGAAAAACCTTTTTGCGCCA CCTTTGGCAAAGTAGGAAGGAACGATTGGCCATGGGCTATGGATCGATCC TGTGGGAACAATGCTCCGTCCTCTCGACGACGCGTGGTCAATGGTCTAAC AGCTAAGGCAGGCAAAACATGAGTACGCCCCCCCCCCCGGCATATCGCCC CTTCCCGGCATTGTGGCGATGCGTGGTCTATGTTCGTGTGGGTACGACAT TCGTTTAACATAAGCACACACCCCCCTGGTGGATAAGAATTGGCCCGAAA AGGCGCTAATTGAGGCATGCAGAATAGGAAAAACATTTTTGAACCACCTT TGGCAAAGCAGGAAAGGGACGATTAGCCATCGGCGATCGAGGGATCGATC CTGTGGGAACAGGGAACAATGCTCCGCCCTCCCAAAAGGCATGCAAACAT GGAGACCCCCCCCCTCTCCCCCATCCCCGGAAACGTGCAGGGTGACACCG TGAATGAGGCTATATTGCACGCGATTTTCGGAGACGGGTGTGCCGTAGCG GTGGTTGGGGGGTTGACGGCGAGGAACGCGAAGCCGGGGTCCCTGGCCGT CCTGGACAACCGCTCGTGGCTGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11556:339..4113+

>mRNA_S-dermatodea_contig11556.995.1 ID=mRNA_S-dermatodea_contig11556.995.1|Name=mRNA_S-dermatodea_contig11556.995.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig11556:339..4113+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTGCGGACCCGGGCTGGACGGGGAGTTGGTGAAGAGCATCGGACTTAA
CCACTCGGTGGAGAGAGAGGTGGTATCTTTTCAGGGCTGCGGAGCGGGGA
TCAACGGCCTCCGACTCGCATCACAGGTGTGCGGACCCGGGCTGGACGGG
GAGTTGGTGAAGAGCATCGGACTTAACCACTCGGTGGAGAGAGAGGTGGT
ATCTTTTCAGGGCTGCGGAGCGGGGATCAACGGCCTCCGACTCGCATCAC
AGTACGCGGTGACGCACCCTGGGCGGCTAGCCCTTCTCGTCTCGGTGGAA
CTCCCTTCTCTGCACATGCACAAGTACGCGGTGACGCACCCTGGGCGGCT
AGCCCTTCTCGTCTCGGTGGAACTCCCTTCTCTGCACATGCACAAGGGTG
ACACCGTGAATGAGGCTATATTGCACGCGATTTTCGGAGACGGGTGTGCC
GTAGCGGTGGTTGGGGGGTTGACGGCGAGGAACGCGAAGCCGGGGTCCCT
GGCCGTCCTGGACAACCGCTCGTGGCTGGTGGGTGACACCGTGAATGAGG
CTATATTGCACGCGATTTTCGGAGACGGGTGTGCCGTAGCGGTGGTTGGG
GGGTTGACGGCGAGGAACGCGAAGCCGGGGTCCCTGGCCGTCCTGGACAA
CCGCTCGTGGCTGGTG
back to top