mRNA_S-dermatodea_contig11529.984.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11529.984.1
Unique NamemRNA_S-dermatodea_contig11529.984.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11529.984.1 vs. uniprot
Match: D8LN23_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN23_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.900e-8
Identity = 41/75 (54.67%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:  511 PTGRNSQSIGGMTAPDCSHDSDRESFVSRVGSYALTDIGVGASERPGGAPGTTLVTGNGXXXXGTYSPTSTVLRS 735
            P+GRNSQS+GGMTA   S     ESFVSR GSYALTDIGVG S++     G       G    G  SPTST++RS
Sbjct:  185 PSGRNSQSMGGMTAE--SDGDGGESFVSRAGSYALTDIGVGHSDQ---GRGNQAGKAGGDSGAGALSPTSTLMRS 254
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BLAST of mRNA_S-dermatodea_contig11529.984.1 vs. uniprot
Match: A0A6H5KYE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.440e-8
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:  511 PTGRNSQSIGGMTAPDCSHDSDRESFVSRVGSYALTDIGVGASERPGGAPGTTLVTGNGXXXXGTYSPTSTVLRS 735
            P+GRNSQS+GGMTA   S     ESFVSR GSYALTDIGVG S++     G       G    G  SP ST++RS
Sbjct:  177 PSGRNSQSMGGMTAE--SDGDGGESFVSRAGSYALTDIGVGHSDQ---GRGDQAGKAGGASGAGALSPASTIMRS 246
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11529.984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN23_ECTSI1.900e-854.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KYE0_9PHAE6.440e-853.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11529contigS-dermatodea_contig11529:1087..3965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_002180.1
Exons2
Model size743
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.2013676-CDS-S-dermatodea_contig11529:1087..13111622924207.2013676-CDS-S-dermatodea_contig11529:1087..1311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11529 1088..1311 -
1694079092.8955057-CDS-S-dermatodea_contig11529:1087..13111694079092.8955057-CDS-S-dermatodea_contig11529:1087..1311Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11529 1088..1311 -
1622924207.2125943-CDS-S-dermatodea_contig11529:3448..39651622924207.2125943-CDS-S-dermatodea_contig11529:3448..3965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11529 3449..3965 -
1694079092.9042666-CDS-S-dermatodea_contig11529:3448..39651694079092.9042666-CDS-S-dermatodea_contig11529:3448..3965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11529 3449..3965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11529.984.1prot_S-dermatodea_contig11529.984.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11529 1088..3965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11529.984.1

>prot_S-dermatodea_contig11529.984.1 ID=prot_S-dermatodea_contig11529.984.1|Name=mRNA_S-dermatodea_contig11529.984.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=247bp
PLGSAEVAAAATASGGNDRGEATLGRPSLDSAAESVGVSSVAVHPRRGGD
GGAKGETRNLLHEGTMAAGRSGRGVGGGDVEGYGNRASNKELDAAIGAAG
GGLRVVHDDDAASHYTGSSVAAGRCGLGRGMDKRHESSFVGGEEDSCLGS
VGPVPGELFPPRFGAMAAVVPTGRNSQSIGGMTAPDCSHDSDRESFVSRV
GSYALTDIGVGASERPGGAPGTTLVTGNGGGGGGTYSPTSTVLRSAT
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mRNA from alignment at S-dermatodea_contig11529:1087..3965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11529.984.1 ID=mRNA_S-dermatodea_contig11529.984.1|Name=mRNA_S-dermatodea_contig11529.984.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2879bp|location=Sequence derived from alignment at S-dermatodea_contig11529:1087..3965- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTTGGTTCTGCCGAAGTTGCTGCCGCCGCCACCGCCTCTGGAGGCAA
TGATCGCGGGGAGGCCACGTTGGGAAGGCCGTCGCTGGACTCAGCTGCGG
AGTCTGTCGGCGTCAGTTCGGTTGCTGTTCACCCTCGACGCGGTGGAGAC
GGCGGGGCGAAAGGCGAGACGAGGAACCTCCTGCACGAAGGCACTATGGC
AGCAGGCAGAAGTGGTCGTGGTGTTGGCGGTGGTGATGTCGAGGGTTATG
GCAACCGGGCTAGCAACAAGGAATTGGATGCGGCGATCGGGGCCGCGGGA
GGAGGGCTGCGAGTGGTTCACGATGATGATGCCGCGTCGCATTATACGGG
TTCGTCGGTCGCCGCTGGTCGTTGCGGTCTCGGGCGAGGAATGGATAAGC
GGCACGAGTCTTCCTTTGTTGGCGGCGAGGAGGACAGCTGCCTTGGTTCG
GTAGGGCCAGTCCCCGGAGAGTTATTTCCGCCGAGATTTGGTGCGATGGC
GGCGGTCGTGCCAACCGGTGGGTGAAGGGAGAGTGGGGTGGGGTGTCGCC
GTGCGTGTTTACTGTGGTTAAGCCATGGCATGGCGTCCATGAACCAACCG
ACTTTATCATTTAGAAGGCTTTATTCAACCAATTTGACTGCACATCAGGT
TGTCGTTGCTCGGCAGGAGTCTGGGGGGGGCTTGGCGCGGGTTTGTGGGT
GACTTGTCAATCCCTCTCGTAATACTTGTAGGGCTTGACAGATGTATGAA
GGCAACCTGATGTTTCCCATCTTGGTACGTGTTTAACCTATTTACGTAGT
TTCTGGTTTTAGGTCGTAATTTTTAAGGAGATATGAGGCGACGTACCAAA
GGAATATCGGTTGTTGTGGCATCGTGTAGAAGAAACCGAATTGCTTAAAC
AAATGTGACCCCCACGCAACGCTTAATGCGTTTTCTTTTTCCCCTCCCGA
TATTGTCCGAAACCGCATATATACACCGTATGTGATGTATACATCTTTTA
GTATATTTAACGGCCGCAAGCAGTATGTGGTGTCGCCGGTCGGTGTTTAG
TTTGTTGTGGCTGTGTCAACTGGGGAGAGAAGTGGGGACTTTCAGCCACG
TTTTAGGAAGGTCGTGGTGAAGCTAGCCCTTCCAGTGTCCTCCTGTATTT
TCTGGTTGCGCATGCGCCGCAACCTTACTCAATGGCCGACGTGCGCACGG
GTGGGGCTTGCAGTCTCGGCGCCAAACCGCTTGAGCTTCTTGTTTCGGTA
TCACCTGTTCCTTCCCACTCTTCTACTAACTGTTTTAGGGGCACACAAGG
CTGAGTGCAGGAACTTTGCGTGTCGCTTTTTCGAGTCAAGGGTGCTGTGT
TCATATATGGCGATTGGCCACAGTTGGCCTTGGCGGGATTCATCGTTGGC
CGCCTCGATCGTTTCCGACGTTTTGCGAACTTCACGCGATTCGCGAATGA
AATGTATCGAAATTATGTTCTAGATATCCCTGTCCGGTGATCATGTGTTC
AGCTTTTTTAGTTTATTTTACAGGTACCCTCTTCGCTAGATTTTAATCAC
ATCAGTTTGCGGACGATCGGTTGTACGTGGAAAGGGTTACGGTATTTGTG
CTTGTTGATGCTCCTCGGACGATTGCGGCGACCTTATCAGGGCTTGCATT
TTATGCTGTTGCGGGATTGCTCTCTGGTTGCAAAGTATCAAGGCTTGGCA
CGGCGGTCGGCTGGGGGGGAATACCGTTGTGAGTAAACCATGGGGGGTCG
TGAGTTTCGGGGCACCCCAGCAGTTGCTGGCTCCCCTTCCAATTCCGTGC
CACCCCAGGGAAAAAGGTGTTTTCGTAGTTCCAAATGCAGTTGGAGGACT
TGCCCCCCGGTTTTAGCCGAACCCACCCCAATGCAAAATTTCACCCACGG
TCCGCACCCGGTCGAGGAATTTGCCCCAGTTGTCATTCAGTCCAGCCCAG
GGCAAACACGACAATCCAATTTTTCACTTCAATCCAGGCGGAGAATTCGC
TCGAGTTACAGGCGAAGCCATCCCAGTGCAAAACAGTAGCCGTACTTGTA
CACCATAACCAGTCCGTGAATCGGCCCCAACTTCAAAACTGTTCTACTCC
TCTTTTTGGGTGGAACTCCCAGAGACCACCCCATCTTAAAACAAACTCAG
CTCAGTGCGATTATGTTTCAGAACAAAACAGACGCGCAGGCGAAGAACTC
TTCGCGCGTATTGTCAAAGATTTTAGGAAGAAGTTTATTTTCTGTTCATT
GTAGCACATGTCGTCTCCCATCCAGGAAATACGTTCCCGTGAGGTTGACG
TGTCTCACAACAATCGTATTTGGGGGAAACCCGTGTCGCGTTTGGTGTAT
CAGTGAAGTCGTCGTATTCCGCAATACTAGTTTGCTACGCCCGTGAGGTG
TGCGTTGGTGGTAAGTGGTGGCAGGGAACACAGTTTTATCCAAAAAACCT
TAGAAGTCCGCTCTGTAAGCCTCTTGATCAATGCAGTTAATAGGCATTCC
CCAAATTATCATTTGGCAGTATCGAAAATGCCACTGATGTTGGAACCCTG
TTCTTCCCCCTAACGACACGCCTGTTTTTTTCTTTGCTCGCTGCCGGTCG
CGTGTCCTCTGGTATAATTTTCACACATGCATCTTCATTGTTTATCATCT
CCAGGCCGAAACTCGCAATCAATCGGAGGTATGACCGCCCCGGACTGCTC
GCACGATTCGGACCGGGAGAGCTTTGTTTCGCGTGTGGGTTCGTACGCCC
TGACCGATATCGGCGTCGGTGCGAGCGAACGGCCGGGGGGGGCGCCTGGG
ACTACTCTGGTGACGGGGAACGGAGGCGGTGGTGGAGGCACTTACTCGCC
CACGTCGACCGTCCTGCGATCGGCAACTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11529:1087..3965-

>mRNA_S-dermatodea_contig11529.984.1 ID=mRNA_S-dermatodea_contig11529.984.1|Name=mRNA_S-dermatodea_contig11529.984.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at S-dermatodea_contig11529:1087..3965- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTTGGTTCTGCCGAAGTTGCTGCCGCCGCCACCGCCTCTGGAGGCAA
TGATCGCGGGGAGGCCACGTTGGGAAGGCCGTCGCTGGACTCAGCTGCGG
AGTCTGTCGGCGTCAGTTCGGTTGCTGTTCACCCTCGACGCGGTGGAGAC
GGCGGGGCGAAAGGCGAGACGAGGAACCTCCTGCACGAAGGCACTATGGC
AGCAGGCAGAAGTGGTCGTGGTGTTGGCGGTGGTGATGTCGAGGGTTATG
GCAACCGGGCTAGCAACAAGGAATTGGATGCGGCGATCGGGGCCGCGGGA
GGAGGGCTGCGAGTGGTTCACGATGATGATGCCGCGTCGCATTATACGGG
TTCGTCGGTCGCCGCTGGTCGTTGCGGTCTCGGGCGAGGAATGGATAAGC
GGCACGAGTCTTCCTTTGTTGGCGGCGAGGAGGACAGCTGCCTTGGTTCG
GTAGGGCCAGTCCCCGGAGAGTTATTTCCGCCGAGATTTGGTGCGATGGC
GGCGGTCGTGCCAACCGCCTCTTGGTTCTGCCGAAGTTGCTGCCGCCGCC
ACCGCCTCTGGAGGCAATGATCGCGGGGAGGCCACGTTGGGAAGGCCGTC
GCTGGACTCAGCTGCGGAGTCTGTCGGCGTCAGTTCGGTTGCTGTTCACC
CTCGACGCGGTGGAGACGGCGGGGCGAAAGGCGAGACGAGGAACCTCCTG
CACGAAGGCACTATGGCAGCAGGCAGAAGTGGTCGTGGTGTTGGCGGTGG
TGATGTCGAGGGTTATGGCAACCGGGCTAGCAACAAGGAATTGGATGCGG
CGATCGGGGCCGCGGGAGGAGGGCTGCGAGTGGTTCACGATGATGATGCC
GCGTCGCATTATACGGGTTCGTCGGTCGCCGCTGGTCGTTGCGGTCTCGG
GCGAGGAATGGATAAGCGGCACGAGTCTTCCTTTGTTGGCGGCGAGGAGG
ACAGCTGCCTTGGTTCGGTAGGGCCAGTCCCCGGAGAGTTATTTCCGCCG
AGATTTGGTGCGATGGCGGCGGTCGTGCCAACCGGCCGAAACTCGCAATC
AATCGGAGGTATGACCGCCCCGGACTGCTCGCACGATTCGGACCGGGAGA
GCTTTGTTTCGCGTGTGGGTTCGTACGCCCTGACCGATATCGGCGTCGGT
GCGAGCGAACGGCCGGGGGGGGCGCCTGGGACTACTCTGGTGACGGGGAA
CGGAGGCGGTGGTGGAGGCACTTACTCGCCCACGTCGACCGTCCTGCGAT
CGGCAACTGCCGAAACTCGCAATCAATCGGAGGTATGACCGCCCCGGACT
GCTCGCACGATTCGGACCGGGAGAGCTTTGTTTCGCGTGTGGGTTCGTAC
GCCCTGACCGATATCGGCGTCGGTGCGAGCGAACGGCCGGGGGGGGCGCC
TGGGACTACTCTGGTGACGGGGAACGGAGGCGGTGGTGGAGGCACTTACT
CGCCCACGTCGACCGTCCTGCGATCGGCAACT
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