mRNA_S-dermatodea_contig11481.962.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11481.962.1
Unique NamemRNA_S-dermatodea_contig11481.962.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11481.962.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.880e-17
Identity = 63/131 (48.09%), Postives = 72/131 (54.96%), Query Frame = 3 
Query:   15 SVVMCDDLGKLPGYDDLEPKRKGLRRLRKAERALLQNIQHNQPSPLAAGGGQNQPTGKANQAFATSAAESTENSEAIPATT--RGEGRQWKRRRWKTAGLSDLTRVLLAAGT---AAAAAGEATANFETVL 392
            SVVM DDLGKLPG DDLEPKR+GLRRLRKAER  L+                                        +P+ T  RG+GRQW+RRRW+T GLSDLTRV+LAAGT   A A    AT +F  VL
Sbjct: 1827 SVVMVDDLGKLPGDDDLEPKRRGLRRLRKAERTFLKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG---LPSRTDMRGKGRQWERRRWRTIGLSDLTRVILAAGTTTEATAGMASATESFRAVL 1954
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BLAST of mRNA_S-dermatodea_contig11481.962.1 vs. uniprot
Match: A0A6H5KI97_9PHAE (DUF4456 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI97_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.830e-16
Identity = 61/131 (46.56%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:   15 SVVMCDDLGKLPGYDDLEPKRKGLRRLRKAERALLQNIQHNQPSPLAAGGGQNQPTGKANQAFATSAAESTENSEAIPATT--RGEGRQWKRRRWKTAGLSDLTRVLLAAGTAAAAAG---EATANFETVL 392
            SVVM DDLG LPG D LEPKR+GLRRLRKAER  L+                                        +P+ T  RG+GRQW+RRRW+T GLSDLTRV+LAAGT   A G    AT  F  VL
Sbjct:  427 SVVMVDDLGNLPGDDGLEPKRRGLRRLRKAERTFLKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXDGGLPSRTEMRGKGRQWERRRWRTIGLSDLTRVMLAAGTTTEATGGMESATGKFRAVL 554
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11481.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNW1_ECTSI1.880e-1748.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI97_9PHAE2.830e-1646.56DUF4456 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11481contigS-dermatodea_contig11481:365..759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D7FNW1
Preferred nameCCDC180
EggNOG free text desc.Domain of unknown function (DUF4455)
EggNOG OGs2CN0H@1,2QT47@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.0934536-UTR-S-dermatodea_contig11481:364..3871622924205.0934536-UTR-S-dermatodea_contig11481:364..387Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11481 365..387 +
1694079091.1037803-UTR-S-dermatodea_contig11481:364..3871694079091.1037803-UTR-S-dermatodea_contig11481:364..387Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11481 365..387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.1058972-CDS-S-dermatodea_contig11481:387..7591622924205.1058972-CDS-S-dermatodea_contig11481:387..759Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 388..759 +
1694079091.115289-CDS-S-dermatodea_contig11481:387..7591694079091.115289-CDS-S-dermatodea_contig11481:387..759Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 388..759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11481.962.1prot_S-dermatodea_contig11481.962.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11481 388..759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11481.962.1

>prot_S-dermatodea_contig11481.962.1 ID=prot_S-dermatodea_contig11481.962.1|Name=mRNA_S-dermatodea_contig11481.962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
MCDDLGKLPGYDDLEPKRKGLRRLRKAERALLQNIQHNQPSPLAAGGGQN
QPTGKANQAFATSAAESTENSEAIPATTRGEGRQWKRRRWKTAGLSDLTR
VLLAAGTAAAAAGEATANFETVLK
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mRNA from alignment at S-dermatodea_contig11481:365..759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11481.962.1 ID=mRNA_S-dermatodea_contig11481.962.1|Name=mRNA_S-dermatodea_contig11481.962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=395bp|location=Sequence derived from alignment at S-dermatodea_contig11481:365..759+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCTCCTCGCGTCAGTGTTGTTATGTGCGATGATCTCGGGAAGCTTCCG
GGCTACGATGACCTAGAACCAAAACGAAAAGGACTCCGTCGTTTAAGAAA
GGCCGAACGGGCACTCCTTCAGAACATCCAACACAACCAGCCCTCGCCGC
TTGCAGCGGGAGGAGGGCAAAATCAACCAACGGGCAAGGCTAATCAAGCT
TTCGCTACTTCTGCCGCGGAAAGCACCGAAAACTCGGAAGCCATCCCCGC
CACGACTCGCGGGGAAGGACGGCAATGGAAGCGGCGACGGTGGAAGACGG
CAGGCTTGTCCGACCTTACTCGAGTGTTGCTTGCGGCAGGGACAGCAGCG
GCGGCAGCTGGGGAGGCTACCGCAAACTTCGAAACCGTTCTGAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11481:365..759+

>mRNA_S-dermatodea_contig11481.962.1 ID=mRNA_S-dermatodea_contig11481.962.1|Name=mRNA_S-dermatodea_contig11481.962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig11481:365..759+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCGATGATCTCGGGAAGCTTCCGGGCTACGATGACCTAGAACCAAA
ACGAAAAGGACTCCGTCGTTTAAGAAAGGCCGAACGGGCACTCCTTCAGA
ACATCCAACACAACCAGCCCTCGCCGCTTGCAGCGGGAGGAGGGCAAAAT
CAACCAACGGGCAAGGCTAATCAAGCTTTCGCTACTTCTGCCGCGGAAAG
CACCGAAAACTCGGAAGCCATCCCCGCCACGACTCGCGGGGAAGGACGGC
AATGGAAGCGGCGACGGTGGAAGACGGCAGGCTTGTCCGACCTTACTCGA
GTGTTGCTTGCGGCAGGGACAGCAGCGGCGGCAGCTGGGGAGGCTACCGC
AAACTTCGAAACCGTTCTGAAAATGTGCGATGATCTCGGGAAGCTTCCGG
GCTACGATGACCTAGAACCAAAACGAAAAGGACTCCGTCGTTTAAGAAAG
GCCGAACGGGCACTCCTTCAGAACATCCAACACAACCAGCCCTCGCCGCT
TGCAGCGGGAGGAGGGCAAAATCAACCAACGGGCAAGGCTAATCAAGCTT
TCGCTACTTCTGCCGCGGAAAGCACCGAAAACTCGGAAGCCATCCCCGCC
ACGACTCGCGGGGAAGGACGGCAATGGAAGCGGCGACGGTGGAAGACGGC
AGGCTTGTCCGACCTTACTCGAGTGTTGCTTGCGGCAGGGACAGCAGCGG
CGGCAGCTGGGGAGGCTACCGCAAACTTCGAAACCGTTCTGAAA
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