mRNA_S-dermatodea_contig11479.961.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11479.961.1
Unique NamemRNA_S-dermatodea_contig11479.961.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: D7G2C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C7_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 8.320e-110
Identity = 192/257 (74.71%), Postives = 209/257 (81.32%), Query Frame = 2
Query:    2 VPTPAKRDLSMVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLR----------QVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKG 742
            VPTPAKRDLSMVY+EAFRHSTIVVR+EL VGQ AL+PDA AL+DPE TTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGS  GL+GLV+TALT QAVAQGYKVVGSMELLGDPLSLV KLGDSVVQFF KTKAEMTGDADT+GAGAKVLVKGLVGGTFGSAAKITG    +      +         +R+        ++          +VFYE+MKAG++GLID P EGAKEEGLAGFIAGMAKG
Sbjct: 1049 VPTPAKRDLSMVYVEAFRHSTIVVRVELWVGQAALSPDAAALEDPETTTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGSLEGMIRGLSGTAIAENESEMEREEDGQLQREVKGLEHGVKQGGKVFYETMKAGITGLIDRPAEGAKEEGLAGFIAGMAKG 1305          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 3.810e-103
Identity = 190/284 (66.90%), Postives = 209/284 (73.59%), Query Frame = 2
Query:    2 VPTPAKRDLSMVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFLTVLSVLGS---------------------------SIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLR----------QVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKG 742
            VPTPAKRDLSMVY+EAFRHSTIVVR+EL VGQ AL+PDA AL+DPE TTGGLTVLGGGFLTVLSVLGS                           SIAHVNPTFVFDELVVTHYCGS  GL+GLV+TALT QAVAQGYKVVGSMELLGDPLSLV KLGDSVVQFF KTKAEMTGDADT+GAGAK+LVKGLVGGTFGSAAKITG    +      +         +R+        ++          ++FYE+MKAG++GLID P EGAKEEGLAGFIAGMAKG
Sbjct: 2683 VPTPAKRDLSMVYVEAFRHSTIVVRVELWVGQAALSPDAAALEDPETTTGGLTVLGGGFLTVLSVLGSRRVPCSLIVIALACRCSWVTILWAETLSIAHVNPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKLLVKGLVGGTFGSAAKITGSLEGMIRGLSGTAIAENESEMEREDDGQLQREVKDLEQGVKQGGKIFYETMKAGITGLIDRPAEGAKEEGLAGFIAGMAKG 2966          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: A0A835YJU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU6_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.190e-61
Identity = 138/326 (42.33%), Postives = 174/326 (53.37%), Query Frame = 2
Query:   11 PAKRDLSMVYLEAFRHSTIVVRLELLVGQGALAPDA-----------------------------------------MALDDPEATTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYK---------------------------VVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLRQ------------VFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIV 748
            PA+ D S+VYLE FRH+ I V+LEL VGQ AL+ +                                          +A +DP+A  GGL VLGG FL+ + VLG ++A ++PTFVFDEL+VTHY GS R L+  +   L  Q VAQGYK                           VVGSMELLGDPL+LV+KL DSV+QF   T+AE  G+  T GAGA++LV G+VGG FGSAAKI G   ++      SG          D+   HL    Q            V Y+S++ G+SGL+D P EGAKEEG+AGF+ GMAKGIV
Sbjct:  210 PARHDHSLVYLEMFRHAPIAVQLELYVGQRALSLETTPAIEDTDAARSMLAHEDLDAAAQAHALPFYRKISLTFNKTLANEDPDAA-GGLAVLGGSFLSAVGVLGGTLARISPTFVFDELLVTHYFGSARELAAALARGLVQQGVAQGYKXXXXXXXXXXXXXXXXXXXPGSERSYKVVGSMELLGDPLALVNKLSDSVLQFLRTTQAEFRGEEPTFGAGARMLVSGVVGGAFGSAAKIAGSLEDVIRGL--SGTEVADAEGGGDTRVRHLKHGFQRGGQXXXXXXXXVLYDSIQQGISGLVDRPMEGAKEEGVAGFLTGMAKGIV 532          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: A0A7S2GN42_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN42_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.250e-50
Identity = 103/250 (41.20%), Postives = 153/250 (61.20%), Query Frame = 2
Query:    2 VPTPAKRDLSMVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLRQVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG 751
            +  P   +  ++Y+E   HS+IVV+LE++VG   L  D +A D+      G+ ++G    ++L VLGSS+AH+NPTF F+EL +    G    L+  +  +L  Q VAQGYKVVGSMELLGDP+SLVS +G  V QFF KT A+M G+++T G G K L +G+VGGTFGS AKITG    L +    +GQ+      + +     +    +  +  +  G++G++  P EGA++ G+ GF+ G+ KG+VG
Sbjct:  205 IKAPHYTNSGLIYIETLYHSSIVVQLEVMVGSRNLNTDDLADDEQR----GVWLMGSSLWSMLVVLGSSLAHINPTFQFNELKLADSFGQRWDLASSIFMSLVKQGVAQGYKVVGSMELLGDPVSLVSNMGVGVYQFFRKTGADMLGESETRGEGVKHLFQGVVGGTFGSVAKITGAADTLLSA--VTGQNERDNWQRPEHVGQGIVIGSERVWRGVTEGITGIVVRPIEGAQQNGVPGFLFGLGKGVVG 448          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: W7U3K2_9STRA (Ph domain containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3K2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.050e-40
Identity = 101/292 (34.59%), Postives = 151/292 (51.71%), Query Frame = 2
Query:   32 MVYLEAFRHSTIVVRLELLVGQGALAP----------------DAMALDDP--EATTGGLTVLGGGFLTVLSVLGSSIAHVNP-TFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVEL---------HANWFPSGQHSFTIPSQ--------------------RDSPTPHLA----RLRQVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG 751
            +VY+E F HS+++V +EL+ G G                     ++ LD    EA   GL ++G G + +L+ +  S+A ++  T VF+EL+ THY GS   L  +V+ +L  QA+ Q YK++G+M+LLG+PL+L    G  VV+FF +T+AE+ GDAD+ G G + L K ++GG F S +KITG    L          A     G       S                     R  P  HL     +  +VFY+S+K+G+  + DLP +GA  EG +GF+ GM KG+VG
Sbjct: 3904 LVYIELFHHSSLIVGMELVPGGGNFPSRKERAKQTGLPGNRMDGSLGLDQELDEALVSGLELIGTGVVQLLADMARSLAQLSGLTLVFNELLFTHYFGSHYDLGHIVVLSLRQQAITQSYKLLGAMDLLGNPLNLFLGFGSGVVEFFRRTQAELVGDADSKGEGLRRLAKAVIGGPFSSVSKITGTVASLLEEVVGVREMAAMAEEGMRDELSSSTARAIGHQTEDGGSSADGWRGRAPPPQHLGEGILKGGEVFYKSVKSGVKNIYDLPQQGASREGFSGFLKGMGKGVVG 4195          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 9.600e-27
Identity = 87/267 (32.58%), Postives = 129/267 (48.31%), Query Frame = 2
Query:   14 AKRDLSMVYLEAFRHSTIVVRLELLVGQ---GALAPDAMALDDPEATTGG---------LTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGV---------CVELHANWFPSGQHSFTIPSQRDSPTPHLARLRQVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG 751
            A   +  +Y+  +    I V ++  +G      L+    A  D E   GG         L  +GG    +LS  G+ IA+ +PTF FD   + HY GS      LV+ +   Q V Q YKV+G +++LGDPLSL   +   V+ F  KT       A  +G G+K LVKG+VGGT  SA+K+T           C++  A   PSG  S   P         L +    F  ++K G++G++  P  GA++ G AGF+ G+ +G+VG
Sbjct: 2553 ADATVDRIYIGEYFQEEIEVAVDFHLGTKVAALLSSKPPADGDEEKDEGGFGASLAMMPLGAVGGVVWGLLSSFGAGIANASPTFNFDAYELEHYYGSKTQAVTLVVMSFVKQGVVQAYKVLGHIDILGDPLSLGMNISSGVIGFVTKT------GAGHIGEGSKDLVKGVVGGTASSASKMTDALDNFVREAGCMDAEA---PSGMESTKAPEHLGQG---LTQGMMYFGHTVKDGITGVVMKPVRGARKNGAAGFVKGVGQGVVG 2807          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: G5AC94_PHYSP (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=G5AC94_PHYSP)

HSP 1 Score: 116 bits (291), Expect = 6.010e-26
Identity = 78/240 (32.50%), Postives = 124/240 (51.67%), Query Frame = 2
Query:   32 MVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLRQVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG 751
            +VY +  R S++ V LE  + +          D   +T GG +V+ G    V+ ++GS+++  +PTF F E+V+     + + L   ++     Q V Q Y++VGS +++G+P+ LV  LG  VV+F   TK E+TGDA T G G KVL K +V     S AKITG   +    +  +   S +     DS +   A L+  F + +  G +G+   P EGA + G+ G + G  +GI G
Sbjct: 2256 LVYFDILRISSLSVDLEYSITRK---------DIVSSTGGGHSVIFGFLSQVVGLIGSNLSG-SPTFSFSEIVIVRCFSTKQRLQSQLVANYVQQGVMQAYRLVGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITGSLDKFVGEF--ADDSSASASGGNDSSSNDNAGLK--FAKDLGRGFTGIFTKPVEGAMKGGVTGLVQGTVQGIAG 2481          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: A0A662X4E4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4E4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.770e-25
Identity = 76/240 (31.67%), Postives = 121/240 (50.42%), Query Frame = 2
Query:   32 MVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLRQVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG 751
            +VY +  R S++ V LE  + +          D   +T GG +V+ G    ++ ++GS+++  +PTF F E+V+     + + L   ++     Q V Q Y++VGS +++G+P+ LV  LG  VV+F   TK E+TGDA T G G KVL K +V     S AKITG   +    +     +S          T + A L+  F + +  G +G+   P EGA   G+ G + G  +GI G
Sbjct: 2280 LVYFDILRISSLSVDLEYSITRK---------DIVSSTGGGHSVIFGFISQIIGLIGSNLSG-SPTFNFSEIVIVRCFSTKQRLQSQLIANYVQQGVMQAYRLVGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITGSLDKFVGEFADDSANSXXXXXXXXXXTDN-AGLK--FAKDLGRGFTGIFTKPVEGAMRGGVTGLVQGTVQGIAG 2506          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: A0A484EGV5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGV5_BRELC)

HSP 1 Score: 114 bits (284), Expect = 5.120e-25
Identity = 73/240 (30.42%), Postives = 124/240 (51.67%), Query Frame = 2
Query:   32 MVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLRQVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG 751
            +VY +  R S++ V LE  + +          D   +T GG +++ GG   ++ ++GS+++  +PTF F E+V+     + + L   ++     Q V Q Y+++GS +++G+P+ LV  LG  VV+F   TK E+TGDA T G G KVL K +V  +  S AKITG   +    +    + +        S +   A ++  F + +  G +G+   P EGA + G+ G + G  +GI G
Sbjct: 2257 LVYFDLLRISSLSVDLEYSITRK---------DIVSSTGGGHSIVFGGLSQIIGLIGSNLSG-SPTFSFSEIVIVRCFTTKQRLQSQLVANYVQQGVLQAYRLIGSADIIGNPIGLVEDLGSGVVEFLKITKGEITGDAQTRGEGVKVLGKTIVKSSASSVAKITGSLDKFVGEFADENRQN----DDDGSMSTDNAGIK--FAKDLGRGFTGIFTKPVEGAMKGGVTGLVQGTVQGITG 2480          
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Match: W2QD77_PHYPN (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2QD77_PHYPN)

HSP 1 Score: 114 bits (284), Expect = 5.120e-25
Identity = 76/245 (31.02%), Postives = 119/245 (48.57%), Query Frame = 2
Query:   32 MVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLVKGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLRQ-----VFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG 751
            +VY +  R S++ + LE  + +          D   +T GG +V+ G    ++ ++GS+++  +PTF F E+V+     + + L   ++     Q V Q Y++VGS +++G+P+ LV  LG  VV+F   TK E+TGDA T G G KVL K +V     S AKITG                F      D P P +  L        F + +  G +G+   P EGA + G+ G + G  +GI G
Sbjct: 2257 LVYFDILRISSLSIDLEYSITRK---------DIVSSTGGGHSVIFGFLSQIIGLIGSNLSG-SPTFSFSEIVIVRCFSTKQRLQSQLVANYVQQGVMQAYRLVGSADIIGNPIGLVEDLGSGVVEFLKITKGELTGDAQTRGEGVKVLGKTIVKSGASSVAKITG------------SLDKFVGEFSDDKPDPSVEDLSNDNAGIKFAKDLGRGFTGIFTKPVEGAMKGGVTGLVQGTVQGIAG 2479          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11479.961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C7_ECTSI8.320e-11074.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU7_9PHAE3.810e-10366.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJU6_9STRA3.190e-6142.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GN42_9STRA1.250e-5041.20Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
W7U3K2_9STRA6.050e-4034.59Ph domain containing protein n=4 Tax=Monodopsidace... [more]
D8LB75_ECTSI9.600e-2732.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G5AC94_PHYSP6.010e-2632.50Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A662X4E4_9STRA3.770e-2531.67Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A484EGV5_BRELC5.120e-2530.42Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W2QD77_PHYPN5.120e-2531.02Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11479contigS-dermatodea_contig11479:3802..6852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.0
Seed ortholog evalue6e-89
Seed eggNOG ortholog2880.D7G2C7
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
EC6.1.1.5
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size751
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11479.961.1prot_S-dermatodea_contig11479.961.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11479 3802..6821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.9816313-CDS-S-dermatodea_contig11479:3801..40211622924204.9816313-CDS-S-dermatodea_contig11479:3801..4021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 3802..4021 -
1694079091.0219738-CDS-S-dermatodea_contig11479:3801..40211694079091.0219738-CDS-S-dermatodea_contig11479:3801..4021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 3802..4021 -
1622924204.991761-CDS-S-dermatodea_contig11479:4740..48831622924204.991761-CDS-S-dermatodea_contig11479:4740..4883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 4741..4883 -
1694079091.0343924-CDS-S-dermatodea_contig11479:4740..48831694079091.0343924-CDS-S-dermatodea_contig11479:4740..4883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 4741..4883 -
1622924205.0017867-CDS-S-dermatodea_contig11479:5508..56891622924205.0017867-CDS-S-dermatodea_contig11479:5508..5689Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 5509..5689 -
1694079091.043214-CDS-S-dermatodea_contig11479:5508..56891694079091.043214-CDS-S-dermatodea_contig11479:5508..5689Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 5509..5689 -
1622924205.0109618-CDS-S-dermatodea_contig11479:5896..59541622924205.0109618-CDS-S-dermatodea_contig11479:5896..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 5897..5954 -
1694079091.0573814-CDS-S-dermatodea_contig11479:5896..59541694079091.0573814-CDS-S-dermatodea_contig11479:5896..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 5897..5954 -
1622924205.0232813-CDS-S-dermatodea_contig11479:6703..68211622924205.0232813-CDS-S-dermatodea_contig11479:6703..6821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 6704..6821 -
1694079091.0732224-CDS-S-dermatodea_contig11479:6703..68211694079091.0732224-CDS-S-dermatodea_contig11479:6703..6821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 6704..6821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.0333607-UTR-S-dermatodea_contig11479:6821..68521622924205.0333607-UTR-S-dermatodea_contig11479:6821..6852Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11479 6822..6852 -
1694079091.083884-UTR-S-dermatodea_contig11479:6821..68521694079091.083884-UTR-S-dermatodea_contig11479:6821..6852Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11479 6822..6852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11479.961.1

>prot_S-dermatodea_contig11479.961.1 ID=prot_S-dermatodea_contig11479.961.1|Name=mRNA_S-dermatodea_contig11479.961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=240bp
MVYLEAFRHSTIVVRLELLVGQGALAPDAMALDDPEATTGGLTVLGGGFL
TVLSVLGSSIAHVNPTFVFDELVVTHYCGSVRGLSGLVLTALTHQAVAQG
YKVVGSMELLGDPLSLVSKLGDSVVQFFHKTKAEMTGDADTMGAGAKVLV
KGLVGGTFGSAAKITGVCVELHANWFPSGQHSFTIPSQRDSPTPHLARLR
QVFYESMKAGLSGLIDLPTEGAKEEGLAGFIAGMAKGIVG
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mRNA from alignment at S-dermatodea_contig11479:3802..6852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11479.961.1 ID=mRNA_S-dermatodea_contig11479.961.1|Name=mRNA_S-dermatodea_contig11479.961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3051bp|location=Sequence derived from alignment at S-dermatodea_contig11479:3802..6852- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCCCACGCCAGCCAAGCGCGACCTCTCCATGGTGTACCTGGAGGCAT TCCGACACTCCACCATAGTGGTGCGCTTAGAGCTGCTGGTGGGACAGGGG GCGCTGGCGCCTGATGCTATGGCGTTAGATGATCCCGAGGCGACCACAGG TGTGCAGCTGACCATGCCGGCTTGCCAACGTGCCCTGATACCCTTTCATT TTACCCATTTGTATTGCGCTGCTCTTCTGGTCGTGCTCGCGTGAACCTTG GTGGTGGTGGGTATCTTGAGGCTGCACGATTCGCGTTGTCCGGATACCGT ACATGAGTGGTACAGCGTTTACCAGCCAGGGCTTGATCGTCTAAAGAACG TGGGAGGTTGATGCTTTTTCGTATTATGTAGATACAAACTAATGTTTATT AGGTAATAGCGCTTTGAACGTTTTTTTCCTTTATGATTTTGTCCAACAAA CTCCTATGCGACTTTTGATGCCAAAGAACTTGATGTTTGCGTTGAGCCAA ACAAGTCGATTTTACACCACACGGGCGTAGCCGTGGCTACCTACTAGTCA GGGCCAAATGTGCCAACCAGTATACGCCTCATGATATACCAGGAGTCTGC CTGCTCTGGCGACTCTTAAAGCATCTGCGATCTTCCGGCCTGGGATGTCC ATAAACAAAAAAAAAACTTGCAAGGTGTTGGGACCAGCGTTAAAACAAAA AAAAAAGTCTTGAATACGCCATTGAGCAAGATTTTGGCCCTGATTACTGT CTACCCCCGTGAGAGTTGGTTCCACGTTCGCCTGCACGGGAACAGGGTCA AGACTTCCTCCTCGAATGTGTTGGATGAGAAGTTGGAATTTTCTCCGTGT TTGCCGCTCCAACGTCTCCTCGCCCCTCCCCTCCATTGTCGTTTTCAGGG GGTCTAACCGTCCTCGGCGGGGGGTTCCTGACGGTACTGTCAGTTCTCGG CAGCAGGTAAGAGGATACTGTCGTTTGCGGCTAAGGGCCACACTTCGTAG GTGTCCTTGTGGATGTTGGAGGTATCGGTCGCGCTGTGGTGCGGTTTCCG TACGGTAGGGGTGTCTATCCAGGCGTTGCTACAGCATTTATAGCAGTGTG TTGACCGCCCCATTTAAGCCGCGCTCTTCCCCCCCCCCCCACCGCCTCCG CACGCTGCTGCAGCATCGCCCACGTCAACCCTACGTTTGTGTTTGACGAG CTTGTGGTCACGCACTACTGCGGCAGCGTGCGCGGGCTGTCTGGGCTAGT GCTGACTGCCCTGACCCACCAGGCCGTAGCGCAGGGGTACAAGGTTGTCG GGTCCATGGAGCTTCTCGGCGATCCGCTGTCCCTCGTCAGCAAGGTAAAG TGGGGGTATGTTGTGTGCGTGTGACTGCCGGTGGTGGGGTTTGATACCAG CGCGATGTTGTTGGGCTGGGGGGAGTACATGTGATATCATGTACGCTACC ATCGAATGTATGTCGTGTTATGTATCTGCGGTACTACCGGGGTGAGTCTC GTATTTCATAATTGCCGCACCACCCCCCTCCCCCTCCCTACCCCCGACCC CCCTAAAAAAAGTAAAGATTTCAGAAGCATAGAGCGAGCGTTGGGGTCTC ACATTTTCAAGAGGGAAGATGGTCCAAGCTAAACCTATGGAGGCTCACTT GTTACAGATGATGCTATGGTGTCTTTTCGTGTACCATGGTATGATGTTAT ATGGTTATGGTATCATAGAGGACATGAGTCTATGTCCTGAGGTATATCCT GGTGATATATATTTGCTGCGTTTTTATGAGCCAATAATAAAGAATGATCC TTTCCTACCACATACTTTTATTATATCTATTAGCTTGATTGAGCCTTCTG TTCGATTATTTGGTAAGTTTTCCCCGACCCCCCTCCCCCGCCCAGATCCT CACCCAACATGCCCATTTCCTGCCTCGTTATTTGCCGTTTGTTTACGTAC TTGGCCTTGTCCATGACAGCTGGGAGACAGCGTGGTCCAGTTCTTCCACA AGACCAAGGCGGAGATGACTGGGGACGCCGATACGATGGGGGCAGGCGCG AAAGTCCTGGTGAAGGGCCTCGTGGGAGGCACATTTGGCAGCGCCGCCAA GATAACGGGTGTGTATGTTGTTCTTGTGTGTTTGTTTACAGTACAATGTT TTGTCGGGGGCTGCTGTATGTCGAGAAAATGGAGACGAAGCCGTGGCTGA AACATGGCCAAGCCTTCCTCGCGATAATTTGGGGAGGGAAGCCTTTGGCA AACGCATTGTTTGCCTACGACAACTAGGTCTGAGATCAAAGATTAATGGA TGCGATAGCCAAAGGATATCCCCCAGTCCCCGGCAACATCGTGGGGACGG AAGAAGAAGCGCTGCACTCGTGTGACTTTCTACTTTCGTTTTTAGGTCCC AGCATTATTGGAAGGCACTGCACGCTTGACTCGAAATGTTGCTTGGGGTA CTGGCATACGCGGCGTATTTCGTTTGCTTTCCAGGATCCTTGGAAGGTAT GATCCGGGGGCTCAGCGGGACAGCGATTGCTGAAGGCGAGGCGGGGATGC GGGGCGAGGACGGGGGGCAGGGGGAGGTAAAGGACTTGGAGCACGGGGTG AAGCAAGGTGGCAAGGTGAGAGAAGATCCATTTATCGGTTTCCAAAACAC GACTGTAATCCAGTAGGGGTACAGGGTTTTTTTACAGACACGGAGGTGGA GGTGAGGGACTGGGTTGAGGGTAAGCCCCCACAGGCGTGGTAGCGTACGG GCAAGCGAACTCTGGCTGGGACCTTTCCTGTCCGATTGCAGATATTTTCA AGGCGGAAAGTATCCCCATAATAGCGTCTAGCTGCGTAGAGCTCCATGCA AATTGGTTCCCAAGCGGCCAACACTCCTTCACCATTCCTTCTCAACGCGA TTCTCCCACCCCACATCTTGCACGTTTACGACAGGTTTTCTACGAAAGCA TGAAAGCGGGACTCTCCGGGTTGATAGACCTCCCTACCGAGGGTGCGAAG GAAGAGGGCTTGGCCGGCTTTATCGCTGGCATGGCCAAGGGGATCGTAGG C
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Coding sequence (CDS) from alignment at S-dermatodea_contig11479:3802..6852-

>mRNA_S-dermatodea_contig11479.961.1 ID=mRNA_S-dermatodea_contig11479.961.1|Name=mRNA_S-dermatodea_contig11479.961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at S-dermatodea_contig11479:3802..6852- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGTACCTGGAGGCATTCCGACACTCCACCATAGTGGTGCGCTTAGA
GCTGCTGGTGGGACAGGGGGCGCTGGCGCCTGATGCTATGGCGTTAGATG
ATCCCGAGGCGACCACAGATGGTGTACCTGGAGGCATTCCGACACTCCAC
CATAGTGGTGCGCTTAGAGCTGCTGGTGGGACAGGGGGCGCTGGCGCCTG
ATGCTATGGCGTTAGATGATCCCGAGGCGACCACAGGGGGTCTAACCGTC
CTCGGCGGGGGGTTCCTGACGGTACTGTCAGTTCTCGGCAGCAGGGGGTC
TAACCGTCCTCGGCGGGGGGTTCCTGACGGTACTGTCAGTTCTCGGCAGC
AGCATCGCCCACGTCAACCCTACGTTTGTGTTTGACGAGCTTGTGGTCAC
GCACTACTGCGGCAGCGTGCGCGGGCTGTCTGGGCTAGTGCTGACTGCCC
TGACCCACCAGGCCGTAGCGCAGGGGTACAAGGTTGTCGGGTCCATGGAG
CTTCTCGGCGATCCGCTGTCCCTCGTCAGCAAGCATCGCCCACGTCAACC
CTACGTTTGTGTTTGACGAGCTTGTGGTCACGCACTACTGCGGCAGCGTG
CGCGGGCTGTCTGGGCTAGTGCTGACTGCCCTGACCCACCAGGCCGTAGC
GCAGGGGTACAAGGTTGTCGGGTCCATGGAGCTTCTCGGCGATCCGCTGT
CCCTCGTCAGCAAGCTGGGAGACAGCGTGGTCCAGTTCTTCCACAAGACC
AAGGCGGAGATGACTGGGGACGCCGATACGATGGGGGCAGGCGCGAAAGT
CCTGGTGAAGGGCCTCGTGGGAGGCACATTTGGCAGCGCCGCCAAGATAA
CGGGTGTCTGGGAGACAGCGTGGTCCAGTTCTTCCACAAGACCAAGGCGG
AGATGACTGGGGACGCCGATACGATGGGGGCAGGCGCGAAAGTCCTGGTG
AAGGGCCTCGTGGGAGGCACATTTGGCAGCGCCGCCAAGATAACGGGTGT
CTGCGTAGAGCTCCATGCAAATTGGTTCCCAAGCGGCCAACACTCCTTCA
CCATTCCTTCTCAACGCGATTCTCCCACCCCACATCTTGCACGTTTACGA
CAGGTTTTCTACGAAAGCATGAAAGCGGGACTCTCCGGGTTGATAGACCT
CCCTACCGAGGGTGCGAAGGAAGAGGGCTTGGCCGGCTTTATCGCTGGCA
TGGCCAAGGGGATCGTAGGCCTGCGTAGAGCTCCATGCAAATTGGTTCCC
AAGCGGCCAACACTCCTTCACCATTCCTTCTCAACGCGATTCTCCCACCC
CACATCTTGCACGTTTACGACAGGTTTTCTACGAAAGCATGAAAGCGGGA
CTCTCCGGGTTGATAGACCTCCCTACCGAGGGTGCGAAGGAAGAGGGCTT
GGCCGGCTTTATCGCTGGCATGGCCAAGGGGATCGTAGGC
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