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Homology
BLAST of mRNA_S-dermatodea_contig1147.954.1 vs. uniprot
Match: D7FP21_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP21_ECTSI) HSP 1 Score: 122 bits (306), Expect = 4.620e-30 Identity = 68/104 (65.38%), Postives = 74/104 (71.15%), Query Frame = 1
Query: 25 MQVLAACVMSQCKRAQADGGGEGLDPAPLSQEWVEVFDFLGPYVFEALCDPECVPLALGVLRRFLHGSQLRDATMREGGFAAATQKLFSLERTGDKRCQRQVEE 336
MQVLAACV SQC R G GLD APL QEWVEVF+ LG VFEAL DPE V LAL VLR FLHGSQLRDA +REGGF A Q ++S E GDK+C VE+
Sbjct: 655 MQVLAACVASQCNRE----GDAGLDQAPLGQEWVEVFERLGHRVFEALFDPEGVALALRVLRSFLHGSQLRDAALREGGFVGALQAMYSSE-AGDKKCAVAVEQ 753
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 124.0 |
| Seed ortholog evalue | 4.3e-26 |
| Seed eggNOG ortholog | 2880.D7FP21 |
| EggNOG free text desc. | CH-like domain in sperm protein |
| EggNOG OGs | 2C2V1@1,2QU8V@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Protein of unknown function DUF1042 |
| Ec32 ortholog | Ec-05_001720.1 |
| Exons | 4 |
| Model size | 336 |
| Cds size | 327 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1147.954.1 >prot_S-dermatodea_contig1147.954.1 ID=prot_S-dermatodea_contig1147.954.1|Name=mRNA_S-dermatodea_contig1147.954.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MEVSNMQVLAACVMSQCKRAQADGGGEGLDPAPLSQEWVEVFDFLGPYVF
EALCDPECVPLALGVLRRFLHGSQLRDATMREGGFAAATQKLFSLERTGD
KRCQRQVEE back to topmRNA from alignment at S-dermatodea_contig1147:8774..11259+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1147.954.1 ID=mRNA_S-dermatodea_contig1147.954.1|Name=mRNA_S-dermatodea_contig1147.954.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2486bp|location=Sequence derived from alignment at S-dermatodea_contig1147:8774..11259+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGGCAGGATGGAGGTTTCGAACATGCAGGTCGGAACGGAGAACAAAGA
GCGCCCAATGAATGACACACTTCTTATCTGAGTTTGGGGTGAGCGGTTGT
TGCGTTTGGTCGAAAAAGGTTAGGTGGGCCGATGCCCCAGTAACGTGGAG
GCCGCGGGTTCAATTTTCGGCACATTGAAACCCCCCTGCTTTCTCAGCTC
TGCCTTTTGCAAAGCGCCCTATTGTGTGAGTAACAAAAAACGAGGAGTCG
GCGGAGTGGCGGGTGCGATGAACGCACTGCCCGATATTTACTCCAAGCAT
ATCCCGGGGAGAGATGGGACGGTCCCTCGTCAACGCAGGAGACATTCGGA
TGAGCACCGCAAGCCGTACGCAAGCCACACACCCGGACGAACACGCGGTC
GAACGGATGGATTAAAAAAACTAAATAAAGAGCAATTGATGGGTGACTTT
GCTGGCTGACGTGGTTGACTGCTTGGTCAACTGCTCTGTAGGTTTGCTAG
GGGATGCATGAAAAATTTATCGGCATGTTTGGGTGGATGGAGCCTTGATA
CGATGAGAACATAATGAATCCTCGCCCTGGCGTCCTCTCGGGTCCATGAT
GACCACCACTCCGTTCCTTTTCCGTTCTTTGCGCCGAAAACATTTCAACA
ACCTGGAAAAGGTTTTGGCGGCTTGTGTGATGTCACAGTGCAAGCGCGCC
CAGGCTGACGGAGGAGGCGAAGGACTTGACCCTGCCCCCCTAAGCCAAGA
GGTATGTATGCGGACGGACGGCATCACCGATACAGTATTGATACGTTGCT
TTACAGAAAAGTACGTGTGGATTTGTCCGGAGGTGCTAAGAAGTTGGCAG
CATGAGCACAGACGAAGAGAAACGCGCTAAAGCACGCTCATTGCACTCGC
GCGTTGTTTGTCCGCATGCAAATGGCACCCCACGCAAGTCCATAGCAATT
CCTACTATTCGCTCCCTTCTCACTGGGATGGATTGCTTCTTCACACATCG
ACCTACCCCAATTCATACCGTATAGTCAGTGGTTGGGGTTTTGTGGAAGT
GGCCAATGGCATCGGGGTTTCAGTCAAATGATCGACCTCGACGGGTAGTT
TCCCGTCCACGAGACATTTATCATACAGGCCACAGCGCTAAGCAATTCTT
ATATGTTTTGCTCAGGTCGGCCTTGTCCATGCTGAAACGATGGACTTTTC
AGGCCGCCTCTCCCCCGACCCCTTCTTGCTTCCTCTCAATTCCGAACAAT
GTTGTCCCTGACAGTGGGTAGAGGTGTTCGATTTCCTGGGGCCCTACGTC
TTCGAGGCCCTGTGCGACCCGGAATGCGTCCCTTTAGCGCTGGGAGTTCT
CAGAAGGTTCCTCCACGGCTCGCAGCTCAGGGATGCCACCATGAGGTCCG
AAAACCCAACAATTGTCAAGCAAGAAGCGGGGAAATGAGATGACATCCTT
TATAATGTCGGACGTGCCGCCTGATGATGCATAGCTAGTTCTAAGCTTTG
CCGTGCAACGTGCTCCATCAGACCGTGCGGCCTCATATCAAGTAGACCAG
GCAAGAGGCAGATGCTTGCACCTGGTGGCACAAGCGACACGAACATACTT
GTACGAAATACAAGCCTGGACACGCTTCGTGTTGTCAGAGGGCTAAAGGG
GTACACGTTGGGACGAAAGAGGAGGCCCGCGTTTCGTACCCTTCACTGCT
TCCGTGGTGTGCCCCCCCCCCCGTGCTGTATCATAGGAGAAGGGGCTGTT
TAGCAGACTTGACTTCCGACGTGTGTCCGCTCTGAGTCGGAGCAATGTGT
TGATTCTCTCGTAAGTATGTATGATACTACATAGATTATTCCATAGGTTG
TTCGACTTCTCGAATTATCATGTGACCATGAGCGGGATCAGCAACCATTG
GCGGGCCGGTCGATTGCAAGTGCGATGCTCAATCAATCAATCCATCAATA
AATCAATAAATCAATAAATCAATCAAACAACCAATCACTCAATCAATCAA
AGGGCGACCGCCACCGCCTTATCTTCTTGTCTTCGTCCCTGGGTGGCCTT
TCGAGAACGATACGTCGCTCGTAGCTTGTCGCATGCTAAACTACACACGT
TCCACATCGATTGACTTCGTACACAGCACAGGTTCCCTCCCCGTGGAAGG
ACAGGCAGCCATTTGTCTTCTCTGCGCACATACGCAGCGCAGAGGAGGCA
GCGTTGCCCATTTTCTGAAGAGGCTCTCCAAGCGGCGAACTATCATGTGT
ACCGCCCCTTTAGGCAGGTTACACTTCTACTGCGTTTGTCAAAACACGTT
AAGACAGCAAGCGTGACAGGGCCCCGGAATGTATTTATGCATCGTGTAGA
CCCTTGCCCCCCTCGCCGATAATTTTCTTCCGCTGTGTCGCACATGCTCA
GGGAGGGCGGATTCGCAGCAGCAACACAAAAGCTTTTCTCGCTGGAGAGG
ACAGGGGACAAGCGGTGCCAACGACAGGTCGAGGAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1147:8774..11259+ >mRNA_S-dermatodea_contig1147.954.1 ID=mRNA_S-dermatodea_contig1147.954.1|Name=mRNA_S-dermatodea_contig1147.954.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig1147:8774..11259+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGTTTCGAACATGCAGATGGAGGTTTCGAACATGCAGGTTTTGGC
GGCTTGTGTGATGTCACAGTGCAAGCGCGCCCAGGCTGACGGAGGAGGCG
AAGGACTTGACCCTGCCCCCCTAAGCCAAGAGGTTTTGGCGGCTTGTGTG
ATGTCACAGTGCAAGCGCGCCCAGGCTGACGGAGGAGGCGAAGGACTTGA
CCCTGCCCCCCTAAGCCAAGAGTGGGTAGAGGTGTTCGATTTCCTGGGGC
CCTACGTCTTCGAGGCCCTGTGCGACCCGGAATGCGTCCCTTTAGCGCTG
GGAGTTCTCAGAAGGTTCCTCCACGGCTCGCAGCTCAGGGATGCCACCAT
GAGTGGGTAGAGGTGTTCGATTTCCTGGGGCCCTACGTCTTCGAGGCCCT
GTGCGACCCGGAATGCGTCCCTTTAGCGCTGGGAGTTCTCAGAAGGTTCC
TCCACGGCTCGCAGCTCAGGGATGCCACCATGAGGGAGGGCGGATTCGCA
GCAGCAACACAAAAGCTTTTCTCGCTGGAGAGGACAGGGGACAAGCGGTG
CCAACGACAGGTCGAGGAGGGAGGGCGGATTCGCAGCAGCAACACAAAAG
CTTTTCTCGCTGGAGAGGACAGGGGACAAGCGGTGCCAACGACAGGTCGA
GGAG back to top
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