mRNA_S-dermatodea_contig11466.952.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11466.952.1
Unique NamemRNA_S-dermatodea_contig11466.952.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 6.530e-26
Identity = 75/120 (62.50%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:  244 GLELPSDLLLKVKSGGLQRMEADALAARRAEEDARDAESAASADAGRL-SRRKAADAPRSDNFRLVVLDGDDGEAADSADGKAQASENANKFLRQRVDRQKRVSHNLFKARKRLGPSPDF 600
            GLELPSDLLL+VKSGGLQRMEAD L    AEE A           GR  +R KA DA RSDNFRLVVLD DDG      + KA A+E+A  FLR R+  +KRVSH+LFKARKRLGPSP+F
Sbjct:  100 GLELPSDLLLRVKSGGLQRMEADVL---EAEEQAXXXXXXXXXXXGRRKARAKAGDASRSDNFRLVVLDEDDGGVDADDESKAHAAESAKNFLRDRMGSRKRVSHSLFKARKRLGPSPNF 216
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BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.380e-7
Identity = 36/52 (69.23%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT*-VRPPPPATPLFLEST 967
            SR  RLAIGDRS GNNAPSS GRV+NGLTA ACKT  VRPP P    F  +T
Sbjct:  413 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPPHPPHRTFFPTT 464
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BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.450e-6
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLA GDRS GNNAPSS GRV+NGLTA ACKT
Sbjct:  136 SRKERLAFGDRSCGNNAPSSRGRVVNGLTAKACKT 170
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BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.000e-6
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLAIGDRS GNNAPSS GRV+NGLTA ACKT
Sbjct:  464 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498
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BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.500e-6
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLAIGDRS GNNAPSS GRV+NGLTA  CKT
Sbjct:  229 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 263
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BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5K0I7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-5
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLAIGDRS GNNAPSS GRV+NGLTA ACKT
Sbjct:  596 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAEACKT 630
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BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.140e-5
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLAIGDRS GNNAPSS GRV+NGLTA ACKT
Sbjct:  486 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 520
[Close]
BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.140e-5
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLAIGDRS GNNAPSS GRV+NGLTA ACKT
Sbjct:  663 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 697
[Close]
BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.190e-5
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLAIGDRS GNNAPSS GRV+NGLTA ACKT
Sbjct:  749 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 783
[Close]
BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Match: A0A6H5KBA0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.360e-5
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  815 SRT*RLAIGDRSSGNNAPSSIGRVMNGLTATACKT 919
            SR  RLAIGDRS GNNAPSS GRV+NGLTA  CKT
Sbjct:  270 SRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 304
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11466.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FIC2_ECTSI6.530e-2662.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LRL5_9PHAE1.380e-769.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJX4_9PHAE2.450e-680.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVX2_9PHAE9.000e-682.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ0_9PHAE9.500e-680.00Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0I7_9PHAE1.070e-582.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JD24_9PHAE1.140e-582.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE77_9PHAE1.140e-582.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4L1_9PHAE1.190e-582.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBA0_9PHAE1.360e-580.00Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11466contigS-dermatodea_contig11466:1408..4097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001350.1
Exons2
Model size1949
Cds size603
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11466.952.1prot_S-dermatodea_contig11466.952.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11466 2754..4097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.454714-UTR-S-dermatodea_contig11466:1407..27531622924204.454714-UTR-S-dermatodea_contig11466:1407..2753Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11466 1408..2753 -
1694079090.645848-UTR-S-dermatodea_contig11466:1407..27531694079090.645848-UTR-S-dermatodea_contig11466:1407..2753Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11466 1408..2753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.469324-CDS-S-dermatodea_contig11466:2753..29371622924204.469324-CDS-S-dermatodea_contig11466:2753..2937Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11466 2754..2937 -
1694079090.6573582-CDS-S-dermatodea_contig11466:2753..29371694079090.6573582-CDS-S-dermatodea_contig11466:2753..2937Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11466 2754..2937 -
1622924204.4829326-CDS-S-dermatodea_contig11466:3678..40971622924204.4829326-CDS-S-dermatodea_contig11466:3678..4097Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11466 3679..4097 -
1694079090.6757247-CDS-S-dermatodea_contig11466:3678..40971694079090.6757247-CDS-S-dermatodea_contig11466:3678..4097Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11466 3679..4097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11466.952.1

>prot_S-dermatodea_contig11466.952.1 ID=prot_S-dermatodea_contig11466.952.1|Name=mRNA_S-dermatodea_contig11466.952.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
DATDEEQSSDDEAPEEVSAAAATALAGRRRKAEQQARQAAPAAKRKRART
SKGGRLASGEEEQEAGLGVARGEDALPSGGGGLELPSDLLLKVKSGGLQR
MEADALAARRAEEDARDAESAASADAGRLSRRKAADAPRSDNFRLVVLDG
DDGEAADSADGKAQASENANKFLRQRVDRQKRVSHNLFKARKRLGPSPDF
*
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mRNA from alignment at S-dermatodea_contig11466:1408..4097-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11466.952.1 ID=mRNA_S-dermatodea_contig11466.952.1|Name=mRNA_S-dermatodea_contig11466.952.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2690bp|location=Sequence derived from alignment at S-dermatodea_contig11466:1408..4097- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGCAACGGACGAGGAGCAGAGCAGTGACGACGAGGCGCCCGAAGAGGT
TAGCGCCGCGGCCGCCACAGCCCTCGCGGGCCGCCGCAGGAAAGCCGAGC
AGCAGGCCCGCCAGGCCGCCCCCGCGGCCAAGAGAAAACGCGCGAGGACC
TCAAAGGGCGGACGCCTCGCGTCTGGGGAGGAAGAGCAAGAGGCAGGGCT
AGGAGTGGCCAGGGGAGAAGATGCGCTCCCCAGCGGTGGGGGCGGGCTTG
AACTGCCGTCGGACTTGCTGCTGAAGGTCAAGTCTGGCGGTTTGCAGCGG
ATGGAGGCGGATGCCTTGGCGGCGCGGCGCGCGGAGGAGGATGCGAGGGA
TGCGGAGTCAGCGGCGTCGGCTGATGCCGGGAGGCTGTCCAGAAGGAAAG
CTGCGGACGCCCCGCGCAGGTGTGTACCGGGGAGGTATGAGTTGACCCTT
CACGACCCCAGACAGGATTCGAACTGGTGTGGATACCAGGTCCCCTTGAT
ATGACCTTGATATGACAATTTCTCTTGAGGATGTAACCACAGGCGCCTCC
ATACGCGCATACACCAGCTCCACGCGGGGCGCTCTTGCCTTGCGGAGGTG
CCCTCGCGGGTGTGGTTGCCCAAGCCCACGTCAGCTTGTCCCAAGACCTC
CACGTCACCCATCAAAGAGTGAATCTGGTGACCTGACGCATCGCGTCATA
ATTCGGGCTCTGTCCACGTTGTACAACCCACATTGGCGTCGACGGCAGTA
TTTCTGAACTGCAAATTTAATGGACGATAGATCGGTCGTAGTGATGGAAG
TAGTTAAAAATAGTTTAAAATACTCGTTTACGATTGTCATGATCATCGCC
GACTCTCTTGTCGACCTCGTCCTGTTTTTCTGCCCATTTTTTTTATATTT
CTTGTTTGATTGAGTGATTGATTGACTAGCACACGTACAGCCGATCGGCT
TATAATCCGACCTGAACCTGACTCATAGTCAAATGCTTTCGCAAAGAGTC
GAGGAGAAAATAACTATTAATAATCGGAACGTACACTTACATCATAATAC
CTTCCCTGGTACTTACTTTTCTGAAATCATAAACAAAAAATATAAAATAA
ACTTCACATGTATTCATACATCCTTCCCTTATCCCGATCACCCGTCCCTA
ATTCCCGCAGCGACAACTTTCGATTGGTGGTGCTGGATGGCGACGACGGC
GAGGCCGCCGATAGCGCGGACGGCAAGGCTCAAGCCTCGGAGAACGCGAA
TAAATTTCTCCGCCAGCGCGTGGACCGCCAAAAACGCGTCAGCCACAACT
TGTTCAAGGCTCGCAAGCGCCTCGGCCCCTCCCCCGATTTTTAGCCCCCC
TCGTCTCGGGCTGGCGTCGCAATTGCAAGGATTGTGACTTTTAATAGCAC
CTGGTATCGCTCTCGTGATACGCAGCCTGGCCGGCGAAAACCAGGCGCAT
CGCTCCACCCCGGCATGGTTGGGACGCGTGGTCTATGTCCGTATGGATAC
GACATGCGTTAAACAGAGGTACACCCCCCCCCTCCCCACCCCGCGCACAC
TGTAAAGTAGGACGTAGCGATTGGCAATCGGCGATCGATCCTCTGGGAAC
AATGCTCCGTCCTCAATAGGACGCGTTATGAATGGCCTAACAGCTACGGC
ATGCAAAACTTGAGTACGCCCCCCGCCCCCCGCCACGCCTCTTTTTTTGG
AGAGTACAAGTATCTGAAGTGTGTGGGCAGAGCCCGAATGATGAGGCGGA
AGAGCTCCAGGCACCCAGATTTTTGTCTTCTTGATACGTGGCGTCGAGTA
CACACGGAGTTGGCGTCTCAGGCGAACACACGCACTCGCGAGGGCACGCT
GAAGAGGCAAGGTGGTGTCCACGGCGAGGTGGTGTTTGCCCGTGAAGAGG
TGTCTGCACGTAACATCCTCAAGAGGCTTGTCATATCTATCATATGTACG
GGACCCTGATTGTATCCTTCTTTTTGCCGTTGTGCTTTTGCCCCAACGAC
GTCTTTTTGTTGCTCAGTTTGCGGGGGCGCCGTTCTCCGCCGCGTTTTTT
TTCCTTCTATGTTTTTGTTGTTCGAGCGTGCGTGTATCTTCTCCTTTGCT
GTTTGTTTTGAGCTACAGAGTAGTACCGCATATATTATAGTGTTGGGTGC
GATACTACTGCTGCATGCAGACAAGAGTGCACGAATCGCGCAGCTGCGTT
TAGCGACGAGCATGTAGCAAGGACAACCGCGGGCCGCGGGCGAAGGCCCC
AAGAGCTATTCTAATTTAGCGGCTGGGGGGCCATCACGTGCTCGACACAG
GGAGTAGCTAAGTGTAGCGCCAACGTGCCATGAATTGGATGCGACCAGGA
CTAACGCGAGCTACCTCTGTAGTGGATGATCTCAGGAGGCCTGTCGGTGC
CGGACGCCCTGGCGGCTAACTTGAGAAAGAAACGGTAACACATAGATGCG
GAATTGTAGCCCGTTGGCCGCACACCGCGCAGCCTCCGTGTGATACAGTT
GAGCCTTGACTTCGATCAAGGCAATAAAACCGGATCCCCTACAGTAGTAT
CATTTATAAGAGCACATGAGCAGGGGTAATGTTATTCCTGTTCTACATAC
CATATTAATATGAAAGACTTAAGTACAACCACGATACTACTGTGTATGAT
AGTACAATTGTAGCATTAGCAAAAATATCTAACTCCGAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11466:1408..4097-

>mRNA_S-dermatodea_contig11466.952.1 ID=mRNA_S-dermatodea_contig11466.952.1|Name=mRNA_S-dermatodea_contig11466.952.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at S-dermatodea_contig11466:1408..4097- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGCAACGGACGAGGAGCAGAGCAGTGACGACGAGGCGCCCGAAGAGGT
TAGCGCCGCGGCCGCCACAGCCCTCGCGGGCCGCCGCAGGAAAGCCGAGC
AGCAGGCCCGCCAGGCCGCCCCCGCGGCCAAGAGAAAACGCGCGAGGACC
TCAAAGGGCGGACGCCTCGCGTCTGGGGAGGAAGAGCAAGAGGCAGGGCT
AGGAGTGGCCAGGGGAGAAGATGCGCTCCCCAGCGGTGGGGGCGGGCTTG
AACTGCCGTCGGACTTGCTGCTGAAGGTCAAGTCTGGCGGTTTGCAGCGG
ATGGAGGCGGATGCCTTGGCGGCGCGGCGCGCGGAGGAGGATGCGAGGGA
TGCGGAGTCAGCGGCGTCGGCTGATGCCGGGAGGCTGTCCAGAAGGAAAG
CTGCGGACGCCCCGCGCAGGACGCAACGGACGAGGAGCAGAGCAGTGACG
ACGAGGCGCCCGAAGAGGTTAGCGCCGCGGCCGCCACAGCCCTCGCGGGC
CGCCGCAGGAAAGCCGAGCAGCAGGCCCGCCAGGCCGCCCCCGCGGCCAA
GAGAAAACGCGCGAGGACCTCAAAGGGCGGACGCCTCGCGTCTGGGGAGG
AAGAGCAAGAGGCAGGGCTAGGAGTGGCCAGGGGAGAAGATGCGCTCCCC
AGCGGTGGGGGCGGGCTTGAACTGCCGTCGGACTTGCTGCTGAAGGTCAA
GTCTGGCGGTTTGCAGCGGATGGAGGCGGATGCCTTGGCGGCGCGGCGCG
CGGAGGAGGATGCGAGGGATGCGGAGTCAGCGGCGTCGGCTGATGCCGGG
AGGCTGTCCAGAAGGAAAGCTGCGGACGCCCCGCGCAGCGACAACTTTCG
ATTGGTGGTGCTGGATGGCGACGACGGCGAGGCCGCCGATAGCGCGGACG
GCAAGGCTCAAGCCTCGGAGAACGCGAATAAATTTCTCCGCCAGCGCGTG
GACCGCCAAAAACGCGTCAGCCACAACTTGTTCAAGGCTCGCAAGCGCCT
CGGCCCCTCCCCCGATTTTTAGCGACAACTTTCGATTGGTGGTGCTGGAT
GGCGACGACGGCGAGGCCGCCGATAGCGCGGACGGCAAGGCTCAAGCCTC
GGAGAACGCGAATAAATTTCTCCGCCAGCGCGTGGACCGCCAAAAACGCG
TCAGCCACAACTTGTTCAAGGCTCGCAAGCGCCTCGGCCCCTCCCCCGAT
TTTTAG
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