mRNA_S-dermatodea_contig11433.928.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11433.928.1
Unique NamemRNA_S-dermatodea_contig11433.928.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11433.928.1 vs. uniprot
Match: A0A6T5NUG8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NUG8_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 1.990e-13
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 1 
Query:    1 MSSVLSTDGLTEKVETRVMGLGIGVFLIFFFSLVALVICLVGATTPRPGAFSCGGASLLGFVVLLLLVAEQDSRYIEDKSDQLEEYDQAFYPRILLVFIFALAALVGLGSVCVTHLAKPVHATPMYDQRTDVRR 402
            M+ +L T  + E   TRV+G+GIGVFLI FF  +AL++ +VGA   + G F   G  +   V  +L  A++ S+Y+    + +++Y   FYPR++   I    AL+   +  V  L + VH   M D  T  +R
Sbjct:    1 MTILLQTAEVVEAEPTRVLGVGIGVFLIAFFFALALLLSVVGAALGKKGIFFGIGTGIFLLVCAILFGADRGSQYVI-VEETVQDYSALFYPRVVFAAILGAGALMA-AAPAVQMLTEQVHTEVMDDLETRRKR 132
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BLAST of mRNA_S-dermatodea_contig11433.928.1 vs. uniprot
Match: A0A2J8A4F0_9CHLO (Transmembrane protein 218 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4F0_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 2.000e-11
Identity = 34/110 (30.91%), Postives = 62/110 (56.36%), Query Frame = 1 
Query:   46 TRVMGLGIGVFLIFFFSLVALVICLVGATTPRPGAFSCGGASLLGFVVLLLLVAEQDSRYIEDKSDQLEEYDQAFYPRILLVFIFALAALVGLGSVCVTHLAKPVHATPM 375
            TRV+G+G+GVFL+FFF  ++LV+CLVG+ T    A      ++ G + L+L+ + +  + ++      E YD    P +++  +  +  L+G   + V H+   V+A P+
Sbjct:   42 TRVVGVGLGVFLVFFFLALSLVVCLVGSRTKYRWAIYMASTAMFGIIALVLIASPKGEKPVKPP----EGYDLTIIPVVIITAVVCIGVLLGAVGMLVFHVLPTVYARPL 147
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BLAST of mRNA_S-dermatodea_contig11433.928.1 vs. uniprot
Match: D8TRS0_VOLCA (Transmembrane protein 218 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRS0_VOLCA)

HSP 1 Score: 59.7 bits (143), Expect = 7.920e-9
Identity = 33/109 (30.28%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:   49 RVMGLGIGVFLIFFFSLVALVICLVGATTPRPGAFSCGGASLLGFVVLLLLVAEQDSRYIEDKSDQLEEYDQAFYPRILLVFIFALAALVGLGSVCVTHLAKPVHATPM 375
            RV G+G+GVFL+FFF  ++++ICL+G+ +          A++ G V L+LL + +  +    ++   E YDQ   P ++++ I A+  L+    + +  L   V+A P+
Sbjct:    4 RVAGVGVGVFLLFFFLALSVLICLLGSRSKLRWIVFTASAAMFGIVALVLLASPKGPK----RTKPPEGYDQTIVPLVVVMVILAIGVLMSAVGMLIFALLPTVYARPL 108
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BLAST of mRNA_S-dermatodea_contig11433.928.1 vs. uniprot
Match: A0A8J2SSJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSJ6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.440e-8
Identity = 39/134 (29.10%), Postives = 65/134 (48.51%), Query Frame = 1 
Query:   22 DGLTEKVETRVMGLGIGVFLIFFFSLVALVICLVGATTPRPGA----FSCGGASLLGFVVLLLLVAEQDSRYIEDKSDQLEEYDQAFYPRILLVFIFALAALVGLGSVCVTHLAKPVHATPMYDQRTDVRRPIF 411
             GL    + RV+G+G+GVFL+ FF +    +C  GA  P+       F+  G    G V  +L +A++   Y  ++  +  E+D      I++  + A AA  GLG+V   H+  PV A  +  +    R+ +F
Sbjct:   40 QGLRRAGKERVLGVGLGVFLLSFFFIAMCALCWAGALLPQERGEQWIFNVVGTLGFGVVACVLFLADERPEYASEERAE-REHDDNLIGLIVVAGLLACAAAFGLGAVLCYHVCAPVEAPLVQKRPAGDRQGLF 172
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BLAST of mRNA_S-dermatodea_contig11433.928.1 vs. uniprot
Match: A0A507FMQ4_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FMQ4_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 2.450e-6
Identity = 32/110 (29.09%), Postives = 57/110 (51.82%), Query Frame = 1 
Query:   37 KVETRVMGLGIGVFLIFFFSLVALVICLVGATTPRPGAFSCGGASLLGFVVLLLLVAEQDSRYIEDKSDQLEEYDQAFYPRILLVFIFALAALVGLGSVCVTHLAKPVHA 366
            K   R+MGLG G+F+      + L+  L+ +     G F  G A  +  VV+LL    +    +    D +  +D  +YPR+ ++ + ++ A+VG G+V   ++A PV+A
Sbjct:   88 KPAARMMGLGWGLFICVAIGALLLMANLIASVHDSAGFFYFGSAVFMAAVVILLACLPRAP--VGSVPDTVTSFDLTYYPRVGIMLLISIGAMVGAGNVMAYYVAVPVYA 195
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11433.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6T5NUG8_HETAK1.990e-1334.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2J8A4F0_9CHLO2.000e-1130.91Transmembrane protein 218 n=1 Tax=Tetrabaena socia... [more]
D8TRS0_VOLCA7.920e-930.28Transmembrane protein 218 n=1 Tax=Volvox carteri f... [more]
A0A8J2SSJ6_9STRA1.440e-829.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A507FMQ4_9FUNG2.450e-629.09Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11433contigS-dermatodea_contig11433:879..3545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_008840.1
Exons4
Model size414
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11433.928.1prot_S-dermatodea_contig11433.928.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11433 879..3545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.2509766-CDS-S-dermatodea_contig11433:878..9291622924203.2509766-CDS-S-dermatodea_contig11433:878..929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 879..929 -
1694079089.874674-CDS-S-dermatodea_contig11433:878..9291694079089.874674-CDS-S-dermatodea_contig11433:878..929Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 879..929 -
1622924203.2605083-CDS-S-dermatodea_contig11433:1857..19681622924203.2605083-CDS-S-dermatodea_contig11433:1857..1968Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 1858..1968 -
1694079089.8830736-CDS-S-dermatodea_contig11433:1857..19681694079089.8830736-CDS-S-dermatodea_contig11433:1857..1968Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 1858..1968 -
1622924203.2710044-CDS-S-dermatodea_contig11433:2534..26401622924203.2710044-CDS-S-dermatodea_contig11433:2534..2640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 2535..2640 -
1694079089.8937352-CDS-S-dermatodea_contig11433:2534..26401694079089.8937352-CDS-S-dermatodea_contig11433:2534..2640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 2535..2640 -
1622924203.2820024-CDS-S-dermatodea_contig11433:3399..35451622924203.2820024-CDS-S-dermatodea_contig11433:3399..3545Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 3400..3545 -
1694079089.9017093-CDS-S-dermatodea_contig11433:3399..35451694079089.9017093-CDS-S-dermatodea_contig11433:3399..3545Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11433 3400..3545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11433.928.1

>prot_S-dermatodea_contig11433.928.1 ID=prot_S-dermatodea_contig11433.928.1|Name=mRNA_S-dermatodea_contig11433.928.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
MSSVLSTDGLTEKVETRVMGLGIGVFLIFFFSLVALVICLVGATTPRPGA
FSCGGASLLGFVVLLLLVAEQDSRYIEDKSDQLEEYDQAFYPRILLVFIF
ALAALVGLGSVCVTHLAKPVHATPMYDQRTDVRRPIF*
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mRNA from alignment at S-dermatodea_contig11433:879..3545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11433.928.1 ID=mRNA_S-dermatodea_contig11433.928.1|Name=mRNA_S-dermatodea_contig11433.928.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2667bp|location=Sequence derived from alignment at S-dermatodea_contig11433:879..3545- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGTCCGTACTAAGCACAGACGGACTGACTGAGAAGGTCGAGACACG
CGTCATGGGCCTCGGTATCGGCGTCTTCCTCATCTTCTTCTTCTCGCTCG
TGGCGCTCGTCATCTGTCTCGTAGGCGCGACTACCCCAAGACCCGGGTAC
GCGTGGGTGTGGGCGTAGGAAACGAAGCGCGATGTTGCCGTTGCCCTTGT
GTATGGGCCTTCGTTGAGTGCCATGCTACCTGATTGCAGTGCGGTTTGCC
GGTGAAGACCTCCTCCTTCGTGTGAGTTAAGCGGGGAAATCCTTGGGTTT
CAGTTGGAACCCATCCATGAAATGGTGGATCGGATGCTCAACAAAAATAT
CGCAGAATCAGTGATGGTGACGTCGGGCAACCAGCCGCGATCGATCGTCC
GAACGACCGTCTGTGCACACACTATATAATGCCAACGAAGGACTTGATAC
CTCCACGTATGTCGTATCCTTAGGTTAATACCTGGTTCAAAACCTTATGG
GCGAGTTATAAGCCAAAAAAAGAACAGGGAATACAGACCCTCCTCAAGTG
AGTACTATTAGTACGATTATCATACTCTGCACAACGCGTTCGTTCATATC
CGACTTCTTCACGTCCTGCCGAAACATCGGCCACATCAGAGTCGCCGTAC
TCAAATACGACTACCAACTTAAACTGGCACCTCATCCATATACTTGTACA
TGTTGTACCTGGAACGACTGGGACCGATGGTCAGGTTCAACCTCATTTAT
TGGATACGGAAGTGTACGGAAAGTGCTCGCCAAAGTCGTTGTTTATGCAA
GTACTGCCTTCGCTTCTCCACTACCGTACCAGAGTATGAAGGACCCATGA
CGCGTTCCTTTATCGCGATGTGTGGTTCTCCTCTGCACGGCGTATACGAC
CCCAGGGCATTTTCCTGCGGAGGAGCAAGTCTTCTGGGGTTCGTAGTCCT
TCTCCTTCTCGTCGCAGAGCAAGACTCTAGATACATTGAGGACAAGAGCG
ACCAATTAGAGGTGCGGGTGTAGCATGTACCATGTATTGATTAATGTAAC
CCGCAGCACCGCAGTTGCCATCACACCACAACGGCGACCTTGCCGCCATC
TCCCTATGGATATGCTGTTTATAGAGCTATGTGCGCGTGGCCTGCGGCTC
GTGTATTAAATGTAGGATATCCAGGGAAGGAGGTTGGGTGCACTGTCATG
AATACCTCAGAAGAGGTTTTTGTCCAAAGGGTTGGCACTCATAATATTGC
TTGTTGTTGCTGCCTGGCCGTAGATATCAGCTCACACGACCCGGCTCATC
ATCCACCCCGGACATGTCGCATATAATAATGTCATGCGCTGAGGCAACCC
GATGAAGTGGATATTGGAGCCACTTGTGATATAATAGAGTGAAGCTCCTT
TGGCAAGCCTCCTCTGAAGGTTCCAGATCGAAGTATCATGTGCATCGATC
GCTACAGAGAAATACACGACGTTGAACGATATATATGCGTGCGGTGTGAC
GAGGTTGTTAGTCAAAGACCTGCCAGCTACCTGCACATCCATTAACAATG
ACGCCCATGTTGGTTCTTTTATGCCAGGAGTACGACCAAGCTTTCTATCC
AAGGATTTTGCTGGTCTTTATCTTCGCACTGGCGGCTTTGGTGGGTCTGG
GAAGCGTGTGCGTCACTCACCTGGCGAAACCTGTTCACGTGAGTGCAACC
CGTCTAGTTCGCGCGGCGGTGGCGCTGCCGGGCGCAAAAGTACTCTCACG
GAGGTACACAGCATTCGAGACGAAATGTCACGACCGTAAATACCCAACTG
TTCCGGCCAATGAATACCCAAGCAAACAAAACACTTACCTCATGAAAACA
AAACGCGCGGTCTGGCCTATGTAACAACATCAACCATGAATACCTACTGT
AATAATTTCTGCCTTTTTCTAAGTTGAGATTTGTGACGAATGTTGACCTC
ATACCCATATTCTCCTGTAATATCTACACTGACTGTTGATCGCGGCACAG
ACCGTTCTTTTTACGTGTTTCGTTTTTTTCTCCCTCATTGCCCCAAGTGC
CGTCGAGAAGTGAAGGTTGACAGCAGGTCGTTGGTGGGGGGTCTCGACCA
TGGTGCCTAGTTTATAGGGGCCTGTTGGGTCGCCTGCTATAGTAATATAT
ATGCAAGCTGGTTGAACCTGGCATGAAATTGAGGCATACCGCATCGCTAA
CCACATTTTGAATCCAGATTTGAAACAAGTCGCCGACGCCAGCTATAATA
CTACAACAGCCCCCTCAGTCGTTCGTGCCTCCGGCCTGCCAGGGCTCCAA
ACATCACACAACTCCCAATGACCCTTTTGCCGCAACCAGCTACTTTTATC
GGGCGCATGGATTACCTATCATATGGGCTCGTGCTTGGGGAGACCCACCT
CTACTATCAATCATGTATTATGGTGTGCTGCTCTCAGAGCTCGATACGCC
GTTCCGCGGCTTGCGAATAGTATCCCTCTAGGTCGTGGCCACCCTAAACT
TTACCACCACCACCCCCTCACCCCCCTCCACGCCCGCATCTCCCTCCCGC
ACCGCCGGCTTTTGCTACCGCCCGATGGATGTACTTCGTACGTCGGGTGG
TGTTTTGTTTTCGCAGGCGACTCCAATGTACGATCAGCGAACAGACGTGC
GCAGGCCCATCTTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11433:879..3545-

>mRNA_S-dermatodea_contig11433.928.1 ID=mRNA_S-dermatodea_contig11433.928.1|Name=mRNA_S-dermatodea_contig11433.928.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig11433:879..3545- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGTCCGTACTAAGCACAGACGGACTGACTGAGAAGGTCGAGACACG
CGTCATGGGCCTCGGTATCGGCGTCTTCCTCATCTTCTTCTTCTCGCTCG
TGGCGCTCGTCATCTGTCTCGTAGGCGCGACTACCCCAAGACCCGGATGT
CGTCCGTACTAAGCACAGACGGACTGACTGAGAAGGTCGAGACACGCGTC
ATGGGCCTCGGTATCGGCGTCTTCCTCATCTTCTTCTTCTCGCTCGTGGC
GCTCGTCATCTGTCTCGTAGGCGCGACTACCCCAAGACCCGGGGCATTTT
CCTGCGGAGGAGCAAGTCTTCTGGGGTTCGTAGTCCTTCTCCTTCTCGTC
GCAGAGCAAGACTCTAGATACATTGAGGACAAGAGCGACCAATTAGAGGG
CATTTTCCTGCGGAGGAGCAAGTCTTCTGGGGTTCGTAGTCCTTCTCCTT
CTCGTCGCAGAGCAAGACTCTAGATACATTGAGGACAAGAGCGACCAATT
AGAGGAGTACGACCAAGCTTTCTATCCAAGGATTTTGCTGGTCTTTATCT
TCGCACTGGCGGCTTTGGTGGGTCTGGGAAGCGTGTGCGTCACTCACCTG
GCGAAACCTGTTCACGAGTACGACCAAGCTTTCTATCCAAGGATTTTGCT
GGTCTTTATCTTCGCACTGGCGGCTTTGGTGGGTCTGGGAAGCGTGTGCG
TCACTCACCTGGCGAAACCTGTTCACGCGACTCCAATGTACGATCAGCGA
ACAGACGTGCGCAGGCCCATCTTTTGAGCGACTCCAATGTACGATCAGCG
AACAGACGTGCGCAGGCCCATCTTTTGA
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