mRNA_S-dermatodea_contig11424.922.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11424.922.1
Unique NamemRNA_S-dermatodea_contig11424.922.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11424.922.1 vs. uniprot
Match: D7FLT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT0_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.010e-10
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   58 SEHEQKIMSMEVFDSVLKEM-PDADVETRLKRADEVMLERLKIAYPKEYEPKPKPRSQ---SDDVWENGNAVRYMAYAIALLLAMTGIYAFRD 324
            S  ++++  M  + + ++EM  DAD    LKR +E+  + L+ ++P  Y+P P  R +   SDDVWENG  VRY+A  +ALLLA  G+YA+ D
Sbjct:   45 STRDKELAKMRAYKAAVQEMGEDADELAMLKRVEEITDKLLRESFPDAYKPAPAKRPKAVDSDDVWENGTVVRYLARVMALLLAAAGLYAWND 137
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11424.922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT0_ECTSI3.010e-1040.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11424contigS-dermatodea_contig11424:331..3128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001380.1
Exons3
Model size630
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11424.922.1prot_S-dermatodea_contig11424.922.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11424 352..2894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.7871022-UTR-S-dermatodea_contig11424:330..3511622924202.7871022-UTR-S-dermatodea_contig11424:330..351Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11424 331..351 +
1694079089.469436-UTR-S-dermatodea_contig11424:330..3511694079089.469436-UTR-S-dermatodea_contig11424:330..351Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11424 331..351 +
1622924202.8316782-UTR-S-dermatodea_contig11424:2894..31281622924202.8316782-UTR-S-dermatodea_contig11424:2894..3128Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11424 2895..3128 +
1694079089.5074322-UTR-S-dermatodea_contig11424:2894..31281694079089.5074322-UTR-S-dermatodea_contig11424:2894..3128Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11424 2895..3128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.7988427-CDS-S-dermatodea_contig11424:351..4501622924202.7988427-CDS-S-dermatodea_contig11424:351..450Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11424 352..450 +
1694079089.4789426-CDS-S-dermatodea_contig11424:351..4501694079089.4789426-CDS-S-dermatodea_contig11424:351..450Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11424 352..450 +
1622924202.809149-CDS-S-dermatodea_contig11424:1329..14281622924202.809149-CDS-S-dermatodea_contig11424:1329..1428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11424 1330..1428 +
1694079089.4884913-CDS-S-dermatodea_contig11424:1329..14281694079089.4884913-CDS-S-dermatodea_contig11424:1329..1428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11424 1330..1428 +
1622924202.8176117-CDS-S-dermatodea_contig11424:2717..28941622924202.8176117-CDS-S-dermatodea_contig11424:2717..2894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11424 2718..2894 +
1694079089.4978437-CDS-S-dermatodea_contig11424:2717..28941694079089.4978437-CDS-S-dermatodea_contig11424:2717..2894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11424 2718..2894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11424.922.1

>prot_S-dermatodea_contig11424.922.1 ID=prot_S-dermatodea_contig11424.922.1|Name=mRNA_S-dermatodea_contig11424.922.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
MPRPKKGGPKGPSEHEQKIMSMEVFDSVLKEMPDADVETRLKRADEVMLE
RLKIAYPKEYEPKPKPRSQSDDVWENGNAVRYMAYAIALLLAMTGIYAFR
DAITGKESFDPRRGPHASDERKNR*
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mRNA from alignment at S-dermatodea_contig11424:331..3128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11424.922.1 ID=mRNA_S-dermatodea_contig11424.922.1|Name=mRNA_S-dermatodea_contig11424.922.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2798bp|location=Sequence derived from alignment at S-dermatodea_contig11424:331..3128+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTACTCGCAAGGAGGACCGATGCCGAGGCCGAAGAAAGGTGGACCAAA
GGGGCCGAGTGAGCACGAACAGAAAATAATGTCGATGGAAGTGTTCGACT
CGGTTCTCAAAGAGATGCCGGTGCGTGGGTCCCCTCTTCGTGGTGGTTTA
TGAGGCTTGTGCGCAAGGGCGGTTTCATCGGGTGCTCACGGAAGTTGCCT
CTTCCACTCTGAGGAGTCCTGGCGCCTCTCGAGAGTCGCGTTTTACTCTG
CTGCAGTCTGTGCAGTAGGCGTGTCAGTTGCCGCAACCCTCTAGGCCGCT
ATCATATGCTTTCAGGCCTGAACGTGAGACGTTTACATCTCAGGAATAGC
ATGGGTTTTGCTGTGTGACCGACTGGCGCATCGTTCGCCCCAAAAACTGC
GCTGCGAGCCACCGGTAAGAGATGCCCTGCGAGCAATCTCTACTTGAGCG
CGCGCGTGCCTTCGCGCTGTGAAGGTGTGCATAGAAACGCCTCGGTGGAC
ATATATTTGACCTTTGTTGTTGCTTTCTTGAATACACAAGGCCCGAACCC
TGCATGTTGGACGTGCCGGATGTGCAGCGCCTCAATGCCACGTTTTTCGC
GATTTTACCGACCTCAAGTACGCCGTGCGCGACGTCTCGTCGTTGTCTCA
CAGCGCGTGTCATCAATCGATTAGCAGGCTCCAGACGAACTCCTGCCATG
GTTACCGCTTTAAACCTGGCGGGAGAATCGGCGAATGCGCCCCCTTGGCG
TGTACTTCGTATACTGTAGCCGGGCTGTCACTTACTCCCCTCTCGGATTC
CTGGGCGTAGGGCGCTGACTATTCGCTGCTTTACATGTCATAATCGAACT
CCGAGGAACGTTGGCACGCCGCTTTTCGTCCGCTTTCACTATGATATCAT
AAGTACCCTCAGCATAGAGTGTCGGCCATTTCGCTCTTTCCATTGCGGTT
GCCAAGTTGCCGCCACCTCTTCGCTCTGGTGCCGTTTCCGTCCCCCCAGG
ACGCCGACGTCGAGACAAGGCTGAAGCGGGCGGATGAGGTCATGCTGGAG
CGCTTGAAGATAGCCTATCCCAAGGAGTACGAGCCAAAGCCGAAACCGGT
GAGATTATTGATGCCACGCGCGAGAGACGGGAAGCGCGCTACCCCAACCG
CTCCGCGCCTTGCTGAGATCGCCGATGCCTACATGCTCCGCGAAGCTTGT
GCTCGGAGCGTGGCGCCTTTCGATGAAGGCTGCAAGCTCTCTCACCCAAC
ACCTCAGCCGGGTAGGTGTTGTGGTTAAGTCTGCGGTTCGAACGCAGTTA
AACGCGCGATTCTTCCAAGGCTGCGCGTGGAATTGCGAACTCGCAGTGAT
TGCCCGGAAACGAAATCGAGCGTTTGGCGCTCGAGTATGTGGCACGCGCC
AAATGGCATACCTGGGAGAAAACCCAACGACGCCCGAACGTGGAGGGTCT
GCCACACAGACGCCAGAGATGTTGGCTGAGAGTGTGGCCCCACCTGTTTT
TCCCTGCGGCTTGGTCGCAAATCGCGAACGCAACGCTTCGGAGTTGAGGC
TGGTTGCGGTGGATGATCTTCGCATTGCGGTTGGTTGTTTTTCGATTTAT
TAATAGTTGCCACAGGTTGATATGAATACCGAATGTCCATACCCAACATA
ACAAACCAGATGTGAATCTGGCATGTCTGGCCTTATGATATGATATTCAT
AGTATACAACATCTGCAATCTTCCGGTCTGAAATATCAATAAAATCTATA
CCTGGTACTACATACCAGTATATATACTGTGTTACGAGGTGTTGAGGCCA
ACGTTTAAGGGGTTGAATACTCCATCGAGCAGAAGCTTGCTTCTGATTAC
TACGATTATGATTACTACTATAATATAATACTGTGTGTACCTCCGTACTG
GGAAGTTTGCTAAGAAAATGCCGTGAAATTGAGTGTACGGTGAGCACACG
GGGACGGATAATTTAATTTTAGGTGGTAAGGGCTCCCCCCCACCACGAGA
GCAGTTCTCAAATTCAGAGAGGAGAGAGGATCACCGATTTTTTCTCCTAG
GGGGTGTTATAGTATGCTTTTCGACACCCTCTCGCCCGCAACCGGTTGCC
ATTTTAACATCCTGTCAGTGTATCTGTCTTGACAGTTTCCCTATGCACCC
TATTGGTGGTGGAGCTGGTGGCGGGCGGCATTTTATCAGGCATGATGTCC
TCTTCAGGGCGGTTTGAAGTTGTTCTCAGTCGGCTTTTCCTTCGTGTTCA
CTGCAGATGCTTGCAACACCACTCCCCACGCCCTCCTAAACTCCAGAAAA
CCTATCTATGTACAAGTCGTAATCGTGCTCAGATTCTCGCTTTGCGCTCT
ACCACCCGCCACACGACGCGTTTTGTTATGCACGCAGCGCTCACAGAGCG
ATGATGTATGGGAGAATGGCAATGCCGTACGGTACATGGCTTACGCCATC
GCGCTCCTTCTGGCGATGACGGGAATTTACGCGTTCAGGGACGCGATCAC
GGGGAAAGAATCGTTTGACCCCAGGAGGGGACCTCATGCCTCGGACGAGA
GAAAGAACCGGTAGAGCCGAAATCGGGCAGCAGCCGACGACCGCTGGTTT
CCTATCCGTAGTTCTCTCGAGTTGCTTTACAGAATGTGGATTGTTCGTGT
GTGTGATTGGCAATCGAGACGGACCGGGGCGCATGGCATTGCCCCATGTT
CCACGATTTGCGATCGTTGGCACGCGTCAGGCCGCTTATTGTTTGTATAT
ATCTAACGGCGAGGTTACGTAGGGCAGGCGGTGGGAGATTTTCGGTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11424:331..3128+

>mRNA_S-dermatodea_contig11424.922.1 ID=mRNA_S-dermatodea_contig11424.922.1|Name=mRNA_S-dermatodea_contig11424.922.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig11424:331..3128+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGAGGCCGAAGAAAGGTGGACCAAAGGGGCCGAGTGAGCACGAACA
GAAAATAATGTCGATGGAAGTGTTCGACTCGGTTCTCAAAGAGATGCCGA
TGCCGAGGCCGAAGAAAGGTGGACCAAAGGGGCCGAGTGAGCACGAACAG
AAAATAATGTCGATGGAAGTGTTCGACTCGGTTCTCAAAGAGATGCCGGA
CGCCGACGTCGAGACAAGGCTGAAGCGGGCGGATGAGGTCATGCTGGAGC
GCTTGAAGATAGCCTATCCCAAGGAGTACGAGCCAAAGCCGAAACCGGAC
GCCGACGTCGAGACAAGGCTGAAGCGGGCGGATGAGGTCATGCTGGAGCG
CTTGAAGATAGCCTATCCCAAGGAGTACGAGCCAAAGCCGAAACCGCGCT
CACAGAGCGATGATGTATGGGAGAATGGCAATGCCGTACGGTACATGGCT
TACGCCATCGCGCTCCTTCTGGCGATGACGGGAATTTACGCGTTCAGGGA
CGCGATCACGGGGAAAGAATCGTTTGACCCCAGGAGGGGACCTCATGCCT
CGGACGAGAGAAAGAACCGGTAGCGCTCACAGAGCGATGATGTATGGGAG
AATGGCAATGCCGTACGGTACATGGCTTACGCCATCGCGCTCCTTCTGGC
GATGACGGGAATTTACGCGTTCAGGGACGCGATCACGGGGAAAGAATCGT
TTGACCCCAGGAGGGGACCTCATGCCTCGGACGAGAGAAAGAACCGGTAG
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