mRNA_S-dermatodea_contig11402.904.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11402.904.1
Unique NamemRNA_S-dermatodea_contig11402.904.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11402.904.1 vs. uniprot
Match: D7FVT9_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 8.170e-11
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  214 LSLEEVKSLTVPKLKAELTRLDQPTGGLKRKAQYVDALTALIEQQNHN 357
            +S++EV SLTVPKLKAELTRL+QP GGLKRKAQ V+ALTA IE+Q  +
Sbjct:    6 VSIDEVSSLTVPKLKAELTRLNQPVGGLKRKAQLVEALTAYIEKQQQD 53
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BLAST of mRNA_S-dermatodea_contig11402.904.1 vs. uniprot
Match: A0A6H5JTQ3_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.070e-10
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  214 LSLEEVKSLTVPKLKAELTRLDQPTGGLKRKAQYVDALTALIEQQNHN 357
            +S++E+ SLTVPKLKAELTRL+QP GGLKRKAQ V+ALTA +E+Q  +
Sbjct:    6 VSIDELSSLTVPKLKAELTRLNQPVGGLKRKAQLVEALTAYMEKQQQD 53
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11402.904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVT9_ECTSI8.170e-1172.92SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JTQ3_9PHAE5.070e-1068.75SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11402contigS-dermatodea_contig11402:1830..3016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue4e-10
Seed eggNOG ortholog2880.D7FVT9
Preferred nameACIN1
KEGG koko:K01278,ko:K12875,ko:K13781,ko:K15559,ko:K16519,ko:K18732
KEGG TC2.A.3.8.6
KEGG Pathwayko03013,ko03015,ko03040,ko04974,map03013,map03015,map03040,map04974
KEGG ModuleM00430
GOsGO:0000003,GO:0000018,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000398,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003006,GO:0003674,GO:0003676,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006323,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008406,GO:0009653,GO:0009887,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010528,GO:0010529,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022411,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030261,GO:0030262,GO:0030263,GO:0030334,GO:0031323,GO:0031324,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033119,GO:0034101,GO:0034641,GO:0035262,GO:0040012,GO:0042592,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045655,GO:0045657,GO:0045910,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050684,GO:0050686,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051270,GO:0051276,GO:0060255,GO:0061458,GO:0061574,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097194,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1903311,GO:1903312,GO:1903706,GO:1903708,GO:2000026,GO:2000145
EggNOG free text desc.apoptotic chromosome condensation
EggNOG OGsKOG2416@1,KOG2416@2759
EC3.4.14.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03019,ko03021,ko03041,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size686
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.6120784-CDS-S-dermatodea_contig11402:1831..21851622924201.6120784-CDS-S-dermatodea_contig11402:1831..2185Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11402 1832..2185 -
1694079088.6601014-CDS-S-dermatodea_contig11402:1831..21851694079088.6601014-CDS-S-dermatodea_contig11402:1831..2185Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11402 1832..2185 -
1622924201.622331-CDS-S-dermatodea_contig11402:2686..30161622924201.622331-CDS-S-dermatodea_contig11402:2686..3016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11402 2687..3016 -
1694079088.6734254-CDS-S-dermatodea_contig11402:2686..30161694079088.6734254-CDS-S-dermatodea_contig11402:2686..3016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11402 2687..3016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11402.904.1prot_S-dermatodea_contig11402.904.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11402 1832..3016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11402.904.1

>prot_S-dermatodea_contig11402.904.1 ID=prot_S-dermatodea_contig11402.904.1|Name=mRNA_S-dermatodea_contig11402.904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=228bp
RGSRVEAWLCVSVGTRSRRGVCLCLCPRRLPVPRSALVSLCLCSGERANC
CFLLPFRLCVRRSNMGDKWCPLSLEEVKSLTVPKLKAELTRLDQPTGGLK
RKAQYVDALTALIEQQNHNHAEDQASPAADAAGGNVGALYTDAASDNVGQ
PEYQPGDPNEADATEVDETTGGVTAAAADAAGMGESPRPHDEPEPAPEAE
DGESAPGGKAQEGEGLYALGEESVTGSG
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mRNA from alignment at S-dermatodea_contig11402:1830..3016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11402.904.1 ID=mRNA_S-dermatodea_contig11402.904.1|Name=mRNA_S-dermatodea_contig11402.904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1187bp|location=Sequence derived from alignment at S-dermatodea_contig11402:1830..3016- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGGCTCCCGCGTGGAAGCCTGGTTGTGTGTGAGCGTAGGCACCCGATC
CCGTCGTGGCGTGTGTCTCTGCCTCTGTCCTCGACGTTTGCCCGTGCCTA
GATCTGCCCTCGTTTCGCTTTGTTTGTGTTCAGGTGAAAGGGCCAATTGC
TGTTTTTTGCTCCCGTTCCGGCTGTGTGTGCGGCGCTCGAACATGGGCGA
CAAATGGTGCCCTCTGTCCCTGGAGGAAGTGAAATCGCTCACCGTGCCGA
AGCTCAAGGCAGAGCTAACGAGGCTAGACCAACCCACGGGTGGTCTCAAG
CGGAAGGCCCAGTACGTGGACGCGCTAACCGTGAGTGCCCTTTGGGTAGA
AAAGTGTGGAGCAAAAAAGATCGACTCTAGTTTTGGGTGCTCGTATCTGG
TTCACCGCCTTCAAAGGGTCGCCAGATGTGCGACGTGGGGGGGAGGGCCT
GGGCGGGGGTAGATTGGGTGGGATCTTCGCCTGGTTCTTCGTATATAAAC
CACGTATAAGCTGTTGTTTCTTTGTGATAGTATGCATAGTCGACGCGGAA
TTGTGATTGTCGTGGTTACATTTGAAAATCGACGATATGCGGCGCGCGCG
TGCGGCAAACAGCAAACGCGATGCTCTTTCCAGAGAGAGACAGAGAGAGG
AGACTCAAGAAATTCGAGTTAAAAAAAAAAATCCAATCATACATAATCCT
TTGTCATAATCCTTTGTACTATCATATTATACAAGTATACTGGTTGTAGA
TATGGTTCAGCATTTCTGCTAAGAAACCGACTGGTATGATCTGTGATACT
TAAAAAAAAAAAACGTGTCCGCATCCGTCAGGCGTTGATCGAGCAACAAA
ACCATAACCACGCCGAGGACCAAGCCTCGCCCGCTGCGGACGCAGCCGGA
GGCAACGTGGGCGCTCTCTACACCGACGCCGCCTCCGACAATGTTGGGCA
GCCCGAATATCAACCCGGTGATCCGAATGAGGCCGATGCCACTGAAGTAG
ACGAAACGACGGGAGGCGTTACAGCGGCAGCAGCAGACGCTGCCGGCATG
GGCGAGTCACCCCGCCCCCATGACGAGCCCGAGCCCGCACCTGAGGCCGA
GGACGGAGAAAGCGCGCCTGGCGGGAAAGCGCAGGAGGGAGAAGGGTTGT
ACGCGCTCGGGGAGGAGAGTGTGACTGGAAGCGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11402:1830..3016-

>mRNA_S-dermatodea_contig11402.904.1 ID=mRNA_S-dermatodea_contig11402.904.1|Name=mRNA_S-dermatodea_contig11402.904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at S-dermatodea_contig11402:1830..3016- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGGCTCCCGCGTGGAAGCCTGGTTGTGTGTGAGCGTAGGCACCCGATC
CCGTCGTGGCGTGTGTCTCTGCCTCTGTCCTCGACGTTTGCCCGTGCCTA
GATCTGCCCTCGTTTCGCTTTGTTTGTGTTCAGGTGAAAGGGCCAATTGC
TGTTTTTTGCTCCCGTTCCGGCTGTGTGTGCGGCGCTCGAACATGGGCGA
CAAATGGTGCCCTCTGTCCCTGGAGGAAGTGAAATCGCTCACCGTGCCGA
AGCTCAAGGCAGAGCTAACGAGGCTAGACCAACCCACGGGTGGTCTCAAG
CGGAAGGCCCAGTACGTGGACGCGCTAACCAGGGGCTCCCGCGTGGAAGC
CTGGTTGTGTGTGAGCGTAGGCACCCGATCCCGTCGTGGCGTGTGTCTCT
GCCTCTGTCCTCGACGTTTGCCCGTGCCTAGATCTGCCCTCGTTTCGCTT
TGTTTGTGTTCAGGTGAAAGGGCCAATTGCTGTTTTTTGCTCCCGTTCCG
GCTGTGTGTGCGGCGCTCGAACATGGGCGACAAATGGTGCCCTCTGTCCC
TGGAGGAAGTGAAATCGCTCACCGTGCCGAAGCTCAAGGCAGAGCTAACG
AGGCTAGACCAACCCACGGGTGGTCTCAAGCGGAAGGCCCAGTACGTGGA
CGCGCTAACCGCGTTGATCGAGCAACAAAACCATAACCACGCCGAGGACC
AAGCCTCGCCCGCTGCGGACGCAGCCGGAGGCAACGTGGGCGCTCTCTAC
ACCGACGCCGCCTCCGACAATGTTGGGCAGCCCGAATATCAACCCGGTGA
TCCGAATGAGGCCGATGCCACTGAAGTAGACGAAACGACGGGAGGCGTTA
CAGCGGCAGCAGCAGACGCTGCCGGCATGGGCGAGTCACCCCGCCCCCAT
GACGAGCCCGAGCCCGCACCTGAGGCCGAGGACGGAGAAAGCGCGCCTGG
CGGGAAAGCGCAGGAGGGAGAAGGGTTGTACGCGCTCGGGGAGGAGAGTG
TGACTGGAAGCGGGGCGTTGATCGAGCAACAAAACCATAACCACGCCGAG
GACCAAGCCTCGCCCGCTGCGGACGCAGCCGGAGGCAACGTGGGCGCTCT
CTACACCGACGCCGCCTCCGACAATGTTGGGCAGCCCGAATATCAACCCG
GTGATCCGAATGAGGCCGATGCCACTGAAGTAGACGAAACGACGGGAGGC
GTTACAGCGGCAGCAGCAGACGCTGCCGGCATGGGCGAGTCACCCCGCCC
CCATGACGAGCCCGAGCCCGCACCTGAGGCCGAGGACGGAGAAAGCGCGC
CTGGCGGGAAAGCGCAGGAGGGAGAAGGGTTGTACGCGCTCGGGGAGGAG
AGTGTGACTGGAAGCGGG
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