mRNA_S-dermatodea_contig11388.896.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11388.896.1
Unique NamemRNA_S-dermatodea_contig11388.896.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11388.896.1 vs. uniprot
Match: D7FTE2_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.600e-19
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 QMTADKPDNTGTLWSRSTIGVSEFSLEWRFRISGSEPSKYGDTIALVISPTKYKA 165
            ++T DKP   GTLWSRSTI  S+FSLEW+FRISG+E  KYGDTIALVI+P KYKA
Sbjct:   79 RLTPDKPQELGTLWSRSTIATSDFSLEWKFRISGTEKVKYGDTIALVIAPMKYKA 133
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BLAST of mRNA_S-dermatodea_contig11388.896.1 vs. uniprot
Match: A0A835YWL8_9STRA (Legume-like lectin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.500e-7
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 QMTADKPDNTGTLWSRSTIGVSEFSLEWRFRISGSEPSKYGDTIALVIS 147
            ++T DKP   G +WSR+T+   +FS+ W+FRISG +   +GD +AL I+
Sbjct:   46 RVTPDKPHQLGHVWSRTTLDSDDFSVIWKFRISGRQSETFGDFLALSIT 94
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11388.896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTE2_ECTSI3.600e-1972.73L-type lectin-like domain-containing protein n=2 T... [more]
A0A835YWL8_9STRA7.500e-744.90Legume-like lectin family-domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11388contigS-dermatodea_contig11388:4750..7326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.2e-15
Seed eggNOG ortholog2880.D7FTE2
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3839@1,KOG3839@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionLectin domain
Ec32 orthologEc-21_001000.1
Exons2
Model size166
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11388.896.1prot_S-dermatodea_contig11388.896.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11388 4750..7323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.6919048-CDS-S-dermatodea_contig11388:4749..48131622924200.6919048-CDS-S-dermatodea_contig11388:4749..4813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11388 4750..4813 -
1694079087.956952-CDS-S-dermatodea_contig11388:4749..48131694079087.956952-CDS-S-dermatodea_contig11388:4749..4813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11388 4750..4813 -
1622924200.71073-CDS-S-dermatodea_contig11388:7225..73231622924200.71073-CDS-S-dermatodea_contig11388:7225..7323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11388 7226..7323 -
1694079087.96804-CDS-S-dermatodea_contig11388:7225..73231694079087.96804-CDS-S-dermatodea_contig11388:7225..7323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11388 7226..7323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.7202127-UTR-S-dermatodea_contig11388:7323..73261622924200.7202127-UTR-S-dermatodea_contig11388:7323..7326Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11388 7324..7326 -
1694079087.976936-UTR-S-dermatodea_contig11388:7323..73261694079087.976936-UTR-S-dermatodea_contig11388:7323..7326Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11388 7324..7326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11388.896.1

>prot_S-dermatodea_contig11388.896.1 ID=prot_S-dermatodea_contig11388.896.1|Name=mRNA_S-dermatodea_contig11388.896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
MTADKPDNTGTLWSRSTIGVSEFSLEWRFRISGSEPSKYGDTIALVISPT
KYKA
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mRNA from alignment at S-dermatodea_contig11388:4750..7326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11388.896.1 ID=mRNA_S-dermatodea_contig11388.896.1|Name=mRNA_S-dermatodea_contig11388.896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2577bp|location=Sequence derived from alignment at S-dermatodea_contig11388:4750..7326- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATGACGGCGGACAAGCCCGACAACACCGGGACATTGTGGTCGCGCTC
TACGATCGGGGTGTCGGAGTTCTCGCTGGAGTGGAGGTTCCGCATCAGTG
GGTAAGCCAGCCGTCGCTACACAGAACAGGCAGTAGGTTGATTGGCGGAC
GCCTCGCCTCGCCTCTGATGGAAGTCTGTTGTCTTTTCTTGTTTTTCGTC
TCCCGTGTGTACCTGTCTCTTTCTCGTGGTTGGTGTTTTCGGCTCGGGTG
CCGTCCTTTCCGACTATTAAGACTTGTATTATATTAATGCTGTACAGTAC
TCGTAACTCTTTCGGATTGAGTAATTTTGGGGTTAGGCCATCTTTCTGTC
TATGTCTATCTGGCAGCGAAGTATTAGTGTTTTACATGGAACCGCGACGG
AACGGTGCCTTCTATATACTATATTATGTATACTACAGTACATACGATTT
GCCTCGCCATATAGCCGCGGTGGAAAGGCGATGGTAACCTAGCCACGCTT
TATAGCTTGTATCCACGGTGGTTGCTCTTGTGCACCCCCCACCCTGATAA
GCTGTACAGAATACCCGCAGTACCGGTATTCTGCTCGAAAATGGAATCAG
TCCCAAAAGTGTTATACTATTAAAATGTACCACAGAATACCCGCAGTACC
TGTAATCTGCGAATCTGAACTCAAGACCCAAAAGGGTTCACGGTACACAG
AGTGCCCGTAGTATCATTCACCGCATACAGTGCCCGTACATGATATAATA
CCTACATTCTGCGCGAAAAATGTGGTACTCAAGACCCGACAACGTTAATT
ACTACTGTAGTAACATTTGTACTCAGTCCGTGGGGGACACTCCTCGGTTT
TCTCCGTGTGTGCTTGTGTTCATGTTTTAACACCGCGCACGCAGATGAAG
CCGGGTATGTATAAAATCACTCAACGGTGCCGAGGACTATGATAGGCCGC
CATCGCCATGACCGTACCACTGTAGTAGTTTTCCGGGTAGTTTTTTTCTT
CTGAGGTTTGTGCTGAATGATTGGCTTGGCTTTTGCTTAGTCGGACTATA
TATTTGTACTGCAATTCAATCGCCTGATTCCGACCCGATGTGTGTGTAGA
TGTGCAAAGAGTCAACAGGGAAATCACGTACCTAGGGACAGGAACACTTG
CTGCTGTGGTTTGTGGACTGCTGTTTTTAACAGGGCGACGCAGGGAAGCT
CTGCCAACACTAGTCCTCTGTAGGATAACGTGCACGTTGGTTGGTTGCTC
CCCCTGGTTCGCGAGTTTGTCTCTGGGGTTTTCCTTGTGGCTTGGCGGCG
TTTCGCGAGGTGGGCATCCCGCTCAAACGCCCCCCTCCTGCGATCGTTGG
CATCGAGGGAAATACGTACTGGTATTAATATAATGGTAGAGAAATGTACT
GCGATACCCTCCCGCTGACGAGGAACATCAACATCAAATTAGACACGGGA
CGCTTTCTTGAATAGCCTACGGCGCTTTTCCCTTCTAGCTGGCATTCAAT
GGATATTATCTTATAGTTGGGGTTTTCGAGTGCCGTCCTGTGAAATAGCG
CGGAAAAACCTTGCTCCTTCTTGTAATGTATAATAGTTGTTTATGATAGC
TCCATGGTTTTAGCACCTCTTTTGCAGTACGCAGTGCGGTAGGTATCCTG
TATGTTGTATGCGACTGACCCGACTCCTTGTTTCCTGTGCTTACATACAT
ATACATGCTCAGTACCTTTGTGGTGGCCTGCTTATTTCTGATCGGGGGCG
GGGGGGGGGGGTCGTAACGTCAACCTCATAGGCGATGTCGTAGCTTGGAA
CACCTTCAAAGGTGGACCCCAACGCTCGATGTATTAGGTGTTTTTGAAAC
AAGTTATTGTTTTAGGCCCCGACACAATGATCCCATAGCATCTATATATA
CAGCAGTATATGCTACGTGACATAAAAAGCATCTGTACCATCGTACGTAA
CGCAAGGGTCCATAAATGGTTGCTCGAACCATGTTCCCTTCCTTAAAAAT
GGTGTGGACCCCAGCGCTCCCTCTTCTATTTTTGAAACACGTACAGGTAT
ATGTTTGTTTCGAATCTTAGGCAGTCGGGGCAGGTGCTCTTTGTGTGCCA
TGAGACTCTCGGCGGTTGTTTTTGACATGGTTATTAATTAATACAAGAGT
GTTAGTGTGGACCGCATATACGATTTGAGGCGTACGCCGATGGTTGTTCA
TAGTTATTTTAGTGTGGACCGCATACACGACTTGAGGCCTACGCCGATGA
TTTGTCATAGTGGTTTTAGTGTAGCCCACAGCCGTACGCTGAAGCCCGAT
TGGGTATACTAAATCCGATACGATTTACATTTTCAAATGCACCACAGTGA
ACGATACGCCTGCCGTGGGTCATCACACCGTGTCCTCCAAACCTAACCCG
CACATCGTCCTTCCAACGCACACCTCATGGGCGACAGCCGTGGCTTGCAA
CTAGTTACTGATTATTACTATAATAACCTTATTTCTTTCTTTTTTCGCCG
GCGCTATTTCCAGGTCTGAACCATCCAAGTACGGGGACACCATCGCCCTC
GTCATATCGCCCACCAAGTATAAGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11388:4750..7326-

>mRNA_S-dermatodea_contig11388.896.1 ID=mRNA_S-dermatodea_contig11388.896.1|Name=mRNA_S-dermatodea_contig11388.896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig11388:4750..7326- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGCGGACAAGCCCGACAACACCGGGACATTGTGGTCGCGCTCTAC
GATCGGGGTGTCGGAGTTCTCGCTGGAGTGGAGGTTCCGCATCAGTGGAT
GACGGCGGACAAGCCCGACAACACCGGGACATTGTGGTCGCGCTCTACGA
TCGGGGTGTCGGAGTTCTCGCTGGAGTGGAGGTTCCGCATCAGTGGGTCT
GAACCATCCAAGTACGGGGACACCATCGCCCTCGTCATATCGCCCACCAA
GTATAAGGCGGTCTGAACCATCCAAGTACGGGGACACCATCGCCCTCGTC
ATATCGCCCACCAAGTATAAGGCG
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