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Homology
BLAST of mRNA_S-dermatodea_contig11376.887.1 vs. uniprot
Match: D8LD29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD29_ECTSI) HSP 1 Score: 175 bits (444), Expect = 2.870e-46 Identity = 86/127 (67.72%), Postives = 105/127 (82.68%), Query Frame = 3
Query: 6 GPDKEQMLKMAKKMSKVVKKQLRNPGTQQFVCSFLKQAEPDTIKSLAGAAGVP-VSEAIIAKVSTYLKEADGKTLESWISFGEISSGIYRRLSQLAVLWSRGSALAGVWLIWVWLRACFAPIALASA 383
GPD +QMLKMAKKMSK VKKQLRNPGTQQ VC+FL QA+P+T+ SLA AG P +EAI+ +S YL++ADGKTLESWI +GEI++ +RRL Q +VLWSRG ALAG+WL+WVW+RACFAPI + A
Sbjct: 312 GPDPKQMLKMAKKMSKGVKKQLRNPGTQQMVCAFLNQAKPETLMSLATTAGFPGANEAIVNGLSGYLQKADGKTLESWIDYGEIATCAFRRLKQFSVLWSRGIALAGIWLVWVWVRACFAPIVVQKA 438
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1380 |
| Cds size | 369 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11376.887.1 >prot_S-dermatodea_contig11376.887.1 ID=prot_S-dermatodea_contig11376.887.1|Name=mRNA_S-dermatodea_contig11376.887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
MLKMAKKMSKVVKKQLRNPGTQQFVCSFLKQAEPDTIKSLAGAAGVPVSE
AIIAKVSTYLKEADGKTLESWISFGEISSGIYRRLSQLAVLWSRGSALAG
VWLIWVWLRACFAPIALASAKA* back to topmRNA from alignment at S-dermatodea_contig11376:436..2935+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11376.887.1 ID=mRNA_S-dermatodea_contig11376.887.1|Name=mRNA_S-dermatodea_contig11376.887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2500bp|location=Sequence derived from alignment at S-dermatodea_contig11376:436..2935+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGGGGTCCTGACAAGGAGCAGATGCTGAAGATGGCCAAGAAGATGAGC
AAGGTGAACAGCAGACCGTGGTAGTCTCTACCTTTGTGCTTGCGCTCTGT
TGAAATATGACGAGGATGGAGGGGCGGGGAGGGGGAGGGGGGGGGAGGGC
GTTCCGGCCAGAGATGACAATCACTATTGGTATTTTCGACGTTTCGCGGT
CTCAACACGGGCGTCCCTATAGCCGACCGAGTGCTTCTTTGTGGTGTATC
ATTCCCGATCGATCGGAAAAAGACGTTAGTGCGCTCGCCAATGCGCACCC
TTTAACACCTTTTCCTTCTATTCCCCCCCCCTCCCCTGCGAGGTCTATGG
TCTAACGACTACGGCATGCACGATGAATGAGTACACCCTCCCCCGCCCCT
CCCCCGCTCTTGCGTGAATGCTTTGACACTCGTGACAGGTGGTCAAGAAG
CAGCTGCGCAATCCCGGCACGCAGCAGTTCGTCTGTTCGTTCCTCAAGCA
GGCTGAGGTGAGTTTGCCTCAAGCACGCCTAAGGCCTCCCGCCAGATCGT
TTGTACATATGAGTGGTCTCTACAGTGGCCTAGTCGGAGTATGTGTGCTA
ATTCGCCGCCGTGGTGACCAGGTGTAACAACCACCGTTTGGAACTTGGCA
TTACTCAAGAAGGGAGTATCATATACGAGAGAAGCAGCCCCACAAATCTA
GAAGTGTTGATGGCGTACTCGTATCGTTTCTCGACGGCGCAGCTTTTGGG
GAGACCGGCGCCTTGCTTACTGACGCGATCGAGCTCTAAATAGCTGCGAG
CCCACAAAGGTGTGGTCTACCCCACCCGTCCTCCCCGCCCCCGCTCATGA
GCGTATTTGTTCGTCAGAGCCCCCACGCCATCCGCCCCGCCCCCTCCCCC
ACGTGCTCCCATACCATCCATGATACCCGTGTTGGTAAATGCTGCTGATG
TATGCTGACGTCTGCTGACGTCGCAGCATCGCGCCGTTGGCAATTTGTTC
GGACACGCCGGATTCCGTCGTGTTTGAAAACAGCACGTGACACATAATCC
GGGGGCGACTTTTTCCCAAGTTATCCCCGAAAGCACGAAAAGTTTAACCG
CGGAGCAGGCTTCTTCCCGGTGGGACAACCCTCACCTCGCCTTGTGATGC
TCGTCGGCGGCCTATGATAGATAACCCTGTATACCGCCTGTGCTTTCACC
CTCGAAACGCCCTCGTACTGTTGGTATCTCCTGCCCCCCCAGCCGGACAC
CATCAAGTCCCTGGCGGGCGCGGCGGGCGTCCCTGTTAGTGAGGCAATTA
TCGCGAAAGTCAGCACGTACCTCAAGGAGGCCGATGGCAAGACCCTAGAG
AGCTGGATCAGTTTCGGCGAGATATCGTCAGGAATCTACCGCCGCCTGTC
CCAGCTAGCCGTGCTCTGGTCAAGAGGGAGCGCGCTTGCCGGCGTGTGGC
TGATCTGGGTGTGGCTGCGGGCTTGCTTTGCGCCCATTGCGCTGGCGAGC
GCCAAGGCGTAGCGTTGACGGCACCCGCTGGCTTGGAGATTCGTGCTGGT
TGCTGTGATGCTTGAGCTGCAGCGATTCTGCTAGGGCGATACCTAGTAGG
GCTGGTAGTAACATCGATGGCATCGATAGCCCCAAGATATTTTTAGGGTG
ATTGATGATGGTGACGGCATCGGCGTGTGGCTCGTGACTCGCTCAGAGGG
CATGTATATCTATCTGGGCTGTGTCGCTTCGGTCTTTTGTCGTGTATCGT
GCGAGTGTTCATTCATGCACACCTCAGTCAGACGACGTGGGTGAAATTTG
TTGGTGTTGTTGGTGCATTCAGAATACTTTGAACACCTGCCAACGCTTCG
GAGTCGTCGTTTACTTGTACGTAGTACTCTTGCACGCGTGGTTGGTGCGC
GTCGGGAGGCACCCATCTGTCTTGTTTGTCTGGTTTTGGTCACCGCGTTC
TTCTCCAGGATCTATTCTATTATGTTGCAGACGCCCGTAAACACGAACTT
ATTGCTTTGCAAGCAGGCGACCATTTCCGTTGAATTGTGTCGCCGATTTT
CTGTGCAGCACCCTGCCGTGGATGCCACCCACGAGGATTGTTTTCCTTCC
AGTGAACCGCCCGTCGAGGTTACCGTAAAAAAAACAGGCGTACGTGGCGG
GCATGTTCTTAGGGCCTTTTGGCAGCGCACTTTGAACCGATTGCCGTTCG
ACGCAGCAGCTAGCTGCGAAGGAATCCCAACGCAAACAGGATGTGAACGG
GGGGAAGAGGATAGGAAATTATATGTGTGAAAAACTTGTAACACTACAAG
TAGTAAATACTATAGTCTGCATTGTCTACACTGACTGGTGTGTCCACCTG
TGATTTAACAACTAACTGACTTATAATGTAGACAGTTTCCCGTACACACG
GTGTTGTTGTTGTGGCGGTCTCACTCTTTGCGCAAGAACATGGTTGTTCA
TGACAATGTATTATGTTACCATTGCTTGGATGGATGGAAGCAAAGAGCCT
back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11376:436..2935+ >mRNA_S-dermatodea_contig11376.887.1 ID=mRNA_S-dermatodea_contig11376.887.1|Name=mRNA_S-dermatodea_contig11376.887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig11376:436..2935+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGAAGATGGCCAAGAAGATGAGCAAGATGCTGAAGATGGCCAAGAA
GATGAGCAAGGTGGTCAAGAAGCAGCTGCGCAATCCCGGCACGCAGCAGT
TCGTCTGTTCGTTCCTCAAGCAGGCTGAGGTGGTCAAGAAGCAGCTGCGC
AATCCCGGCACGCAGCAGTTCGTCTGTTCGTTCCTCAAGCAGGCTGAGCC
GGACACCATCAAGTCCCTGGCGGGCGCGGCGGGCGTCCCTGTTAGTGAGG
CAATTATCGCGAAAGTCAGCACGTACCTCAAGGAGGCCGATGGCAAGACC
CTAGAGAGCTGGATCAGTTTCGGCGAGATATCGTCAGGAATCTACCGCCG
CCTGTCCCAGCTAGCCGTGCTCTGGTCAAGAGGGAGCGCGCTTGCCGGCG
TGTGGCTGATCTGGGTGTGGCTGCGGGCTTGCTTTGCGCCCATTGCGCTG
GCGAGCGCCAAGGCGTAGCCGGACACCATCAAGTCCCTGGCGGGCGCGGC
GGGCGTCCCTGTTAGTGAGGCAATTATCGCGAAAGTCAGCACGTACCTCA
AGGAGGCCGATGGCAAGACCCTAGAGAGCTGGATCAGTTTCGGCGAGATA
TCGTCAGGAATCTACCGCCGCCTGTCCCAGCTAGCCGTGCTCTGGTCAAG
AGGGAGCGCGCTTGCCGGCGTGTGGCTGATCTGGGTGTGGCTGCGGGCTT
GCTTTGCGCCCATTGCGCTGGCGAGCGCCAAGGCGTAG back to top
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