mRNA_S-dermatodea_contig11332.861.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11332.861.1
Unique NamemRNA_S-dermatodea_contig11332.861.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11332.861.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 4.450e-103
Identity = 155/212 (73.11%), Postives = 180/212 (84.91%), Query Frame = 1 
Query:    1 GYQIVLEGDDFEDRPSWAYHLGAVLITYFCVNASLRMVAEGPVKYIMLWRHSLGMVLNLIGVAFYLGLWFDGEGWRNLYHILQASRLMILWNVLHKIGPTSAEVAKRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCDTPLGKKPLDSIADHSMTQRWLFYKDVVSFESLLQSFASMTDVIMLSNWPIFMDAAADVSNSWLTKLFFYSFKV 636
            GYQIVLEGDD E RP+WAY LG  LI YFCV ASLRM+ +G   YIM WRH+LGM LNLIGV +Y+GLWFDG GW + Y ILQASR++ILWNVLH++G TS+EVA+RLEFVFPAVLRASFVLFSVTYSY+VLA+ MYC TPLG +P+DS+ADHSM QRW +YKDV+SF SL QSFA+MTD++MLSNWP+FMDAA DV N    K+FFYSFKV
Sbjct:  595 GYQIVLEGDDPEGRPTWAYPLGGFLIAYFCVQASLRMIVDGARLYIMQWRHALGMCLNLIGVTYYMGLWFDGTGWHSFYKILQASRVVILWNVLHRLGSTSSEVARRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVLSFASLHQSFAAMTDIVMLSNWPLFMDAAGDVGNVVTAKIFFYSFKV 806
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BLAST of mRNA_S-dermatodea_contig11332.861.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 6.670e-103
Identity = 157/212 (74.06%), Postives = 178/212 (83.96%), Query Frame = 1 
Query:    1 GYQIVLEGDDFEDRPSWAYHLGAVLITYFCVNASLRMVAEGPVKYIMLWRHSLGMVLNLIGVAFYLGLWFDGEGWRNLYHILQASRLMILWNVLHKIGPTSAEVAKRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCDTPLGKKPLDSIADHSMTQRWLFYKDVVSFESLLQSFASMTDVIMLSNWPIFMDAAADVSNSWLTKLFFYSFKV 636
            GYQIVLEGDD E RP+WAY LG  LI YFCV ASL M+ +G   YI  WRH+LGM LNLIGVA+Y+GLWFDG GW + Y ILQASR++ILWNVLH++G TS+EVA RLEFVFPAVLRASFVLFSVTYSY+VLA+ MYC TPLG +P+DS+ADHSM QRW +YKDV+SF SL QSFA+MTDVIMLSNWP+FMDAA DV N    KLFFYSFKV
Sbjct:  462 GYQIVLEGDDPERRPTWAYPLGGFLIAYFCVQASLWMIVDGARLYIRQWRHALGMCLNLIGVAYYMGLWFDGTGWHSFYQILQASRVVILWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVISFASLHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKLFFYSFKV 673
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BLAST of mRNA_S-dermatodea_contig11332.861.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 1.620e-76
Identity = 122/211 (57.82%), Postives = 159/211 (75.36%), Query Frame = 1 
Query:    1 GYQIVLEGDDFEDRPSWAYHLGAVLITYFCVNASLRMVAEGPVKYIMLWRHSLGMVLNLIGVAFYLGLWFDGEGWRNLYHILQASRLMILWNVLHKIGPTSAEVAKRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCDTPLGKKPLDSIADHSMTQRWLFYKDVVSFESLLQSFASMTDVIMLSNWPIFMDAAADVSNSWLTKLFFYSFK 633
            GYQIV  GD+ E RP+WAY LGAVLI YFC+ A+LRM+A G   Y + WR+ L M LN++G+A+Y  LW  G+ + + Y ILQA RL +LW  LH +GPTS++VA RLEFVFPAV+RASFVLF++TY+YAV+AYAMYC TPLG +P+  + D SM +R+   K+V +F +L +S+ASM  V+M SNWP+FMDAA  V N  + K+FFYSFK
Sbjct:  107 GYQIVRAGDNPEGRPAWAYPLGAVLIFYFCLQAALRMIAGGVRPYFLEWRNILEMSLNMVGIAYYAQLWPRGQAFHSFYQILQALRLELLWINLHLLGPTSSDVATRLEFVFPAVIRASFVLFALTYTYAVVAYAMYCSTPLGGEPIGDLKDDSMVKRFAAVKEVANFATLPRSYASMMYVVMFSNWPMFMDAAGVVGNLVVAKVFFYSFK 317
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11332.861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0T6_9PHAE4.450e-10373.11Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR41_ECTSI6.670e-10374.06Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
D7FGS1_ECTSI1.620e-7657.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11332contigS-dermatodea_contig11332:912..5256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size636
Cds size636
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11332.861.1prot_S-dermatodea_contig11332.861.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11332 912..5256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924198.1364145-CDS-S-dermatodea_contig11332:911..10601622924198.1364145-CDS-S-dermatodea_contig11332:911..1060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 912..1060 +
1694079086.078336-CDS-S-dermatodea_contig11332:911..10601694079086.078336-CDS-S-dermatodea_contig11332:911..1060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 912..1060 +
1622924198.1527905-CDS-S-dermatodea_contig11332:2448..26061622924198.1527905-CDS-S-dermatodea_contig11332:2448..2606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 2449..2606 +
1694079086.0883176-CDS-S-dermatodea_contig11332:2448..26061694079086.0883176-CDS-S-dermatodea_contig11332:2448..2606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 2449..2606 +
1622924198.171557-CDS-S-dermatodea_contig11332:4154..43201622924198.171557-CDS-S-dermatodea_contig11332:4154..4320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 4155..4320 +
1694079086.0970578-CDS-S-dermatodea_contig11332:4154..43201694079086.0970578-CDS-S-dermatodea_contig11332:4154..4320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 4155..4320 +
1622924198.1872714-CDS-S-dermatodea_contig11332:5093..52561622924198.1872714-CDS-S-dermatodea_contig11332:5093..5256Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 5094..5256 +
1694079086.1066751-CDS-S-dermatodea_contig11332:5093..52561694079086.1066751-CDS-S-dermatodea_contig11332:5093..5256Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11332 5094..5256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11332.861.1

>prot_S-dermatodea_contig11332.861.1 ID=prot_S-dermatodea_contig11332.861.1|Name=mRNA_S-dermatodea_contig11332.861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=212bp
GYQIVLEGDDFEDRPSWAYHLGAVLITYFCVNASLRMVAEGPVKYIMLWR
HSLGMVLNLIGVAFYLGLWFDGEGWRNLYHILQASRLMILWNVLHKIGPT
SAEVAKRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCDTPLGKKPLDSI
ADHSMTQRWLFYKDVVSFESLLQSFASMTDVIMLSNWPIFMDAAADVSNS
WLTKLFFYSFKV
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mRNA from alignment at S-dermatodea_contig11332:912..5256+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11332.861.1 ID=mRNA_S-dermatodea_contig11332.861.1|Name=mRNA_S-dermatodea_contig11332.861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4345bp|location=Sequence derived from alignment at S-dermatodea_contig11332:912..5256+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTATCAGATTGTGCTTGAGGGAGATGACTTTGAAGACCGGCCGAGTTG
GGCATATCATCTGGGGGCGGTGCTCATCACGTACTTCTGCGTGAACGCCA
GCCTGAGAATGGTGGCCGAGGGACCTGTCAAGTACATCATGCTGTGGCGG
TGAGTGGGTTGGTTGTAAGCGTGCGTTGCGGTTGATTTGATTTGATTTGA
TTGATTGATTGATTGGGTATCGCATTTACAGCCGACCGGCCCACCCATGG
TTGCCGGTCCCGCTCGTGGTCAGACGAGACAGCGAGAAATCGAAAAAAAA
AAACGGAATTATAACTATATGTGTATACCGGAGTACATGAGAAATAATCA
AGACACACAGACGCTCGGAAACAGGGGGAATGTACCTCGGAACTTGAGTC
TGCAAAAATACATGTGTGGGTGTGAGGATTCATGCCCCCTGGCCCTGGCA
TACCGCTCCGTTCCGGCATTGATGGGGTACGAGGTCTATGCCCGTTTGGA
TACGAAATAGTTAAGCACACCCCCACTTCGCACCCCCGTCATTTGCGCCA
GCTGTGTTGTTCGATGAATGAGTACGTGACGTACCGTGTTCTACCCCCGT
CGAGTCTCTGTGCGGTGCTCCAGCCATTCGTGAAACGCACCCGAGCGGGG
TGGCGGCCTGAGATACACAGGCTTGCAACTGAAGCGGACGAGGACACTAA
ACACTTATTAACAGTAGTCGTCTAGACCCCATCTGTGCTCGCAAGGGACC
ATCGTTTCATTCCCCCCGACACGTGCCATTGATGTGTGTGCTGCTCAGTG
AGGGTTTCAGCGCTTTCGCACCTCGCCCGTTTTTTCCCGAATTTCTTGCT
CACGCTCTCGCGCTTTTCTGCGACAGGGCTAAAAACCAAAAACGTATAAT
TTACAACCGAAGAAAGAAAAATAGACAAACCGAAAAAAGTAAAATAGACA
AACGCGAAAAAAAACCCCCGACAAAAACGAAGAAATTAAAAATATGGCAT
CAACACACCCAAAAAAAGGAATAATAGATACCGTCGGGATACAATCTCCC
GACCTCAAAAACCTTCTGGAGCGTGTGTTGCTGTCGGTACACCAGCCCTT
TACAGGTACACCCGCCCTTTACACAATTGGCGGTAAAACGTTCAAGCTTA
ACCGTTTCCGAACCGAGTCCGTTTTGCGCCGAATATAGCCTCTACTACTG
TCGTGTTCTAGTATGCCGGTGACGTGTGCACGGACAGGTGCACCACCGCC
GTGCGTGCGAGCTAAGCCGTGGCAGGCTTATCGTCGCGGAACCTCCGCCA
ATACCGTACAGCGAAGGAGTAGCCACCGTTCGGGTACTGTACCTGTTCGA
TGTGAAATGCGGCGCTGCAGATGACCTAACCCCGAAAACAGCCTCCATCC
CAAAACGATTGAGGCGAGATGTGGGATTATGTAACCAGGACGGCCATAAG
GGCGCACGTTTGTCGTCGGCACCCTCCCCACCCCCGCCTTCGGGCTTACC
TGCATCTCCTCCCTCCACCCCGGCCCCCTCTGGTCAGACACTCGCTCGGT
ATGGTGCTGAACCTGATCGGCGTGGCTTTCTACCTCGGGCTATGGTTTGA
CGGCGAGGGGTGGCGCAACCTTTATCACATCTTGCAGGCCTCTCGCTTAA
TGATTCTGTGGAACGTGCTCCACAAGATCGGGCCCACCAGCGCTGGTAAG
GGTAGGGAAGGGAAAGGCAATGAACGGAATCTGGCAAACGCTTTGGGTCA
CGCCGTTTTGTGCTCGGACCTTGCGGCCCCTCGCGTGAAAATTTGAGTTG
TGGCAATCCTGAGAAATAGTACGCACATAAACGCTTTGACATGTTTTGTT
TCCGCACGCGCATGAGCAATTCTGGCCCAAACGCGGTGCACAACAACCGC
GTTTGATTTGGGCGCTACGGGCGTCGGATTTGGGTCTGATGTGCCTTCAG
GGTTCGGGTTCGCGGTAGGGTTAGCGTGGGTTCGGTCGACGTCCGTGCCT
TGAGCCTGCTCGCACCCGTTCTGTATGAAATGCAAATGGGATGAACAAGT
AGCTCGTGACGATCATCATGAAAAGCTTTCTCAGGATTGCCAAAACAGGT
CTCCCGTCGTGAACGGAGGGTCAATTGTTCCGTCTCTCGGGCGGCGTCGG
CACGTGTTGTACCTAAATTTTGCTGTGAATGTAGATAATCTCCCGTTGGT
GCGCGTGCGCGGGAGATTGCTACATACGCAGCAGCGCAATTACATCGAAA
TATATTTTGAGTAAATATTTCAGGGCGGCTCCGGTTGCGTTGCCGAGGTG
GCATGCGTTCGTCAAGCCTTCGCTACAAGTGGACTATGCTGCCGAGTGCT
AGCGCTCTCTTTATGTGGGTGGTTAGCAAGAGGGTGGCATCTTCCCTTCC
CAAGACGCTTATTATAGCTCGTGGGACGATGCATCGACGAAATAAAACGA
AACCGTCGAGGTACTCTTAGTTGGATAGGCGCATCCGTCGAGGTACACTC
CGTACTTGTAGCATCCCGGAGGAACGCAAGAGTAGTACGCCCGCACACTG
CTGTTGTGCGCTGTGCGGCCGGCGCGGAGGGGTACGACCGAGGCGTGGCC
AGCGGTAAATGCGATTGAGCGGCAACCAAAAAGAAAATACAAATAGTTAA
TAAGCATCTCAACGATACGCAACACTTCAGACGGGACGAGCATGTCTGCA
CATGTCGGATTATTGATCAAGACTTAATCCGTAAGCTGTAGTCAAGTGCC
GTTCCAGTTGTTGGGATTCTTGTTCTTCGTTTGAGGCTGGCTCTTGTTTA
GTGTTTATCTCGTCATGTGTGTGGATGGATGCCCATTTTTGGTTGGATAT
ATCTTCCCTGTGTACCTTGTGTACCTTATTACTGTACCTTCTGTACCTCT
TTTGCGACCACGAGCGGGATCGGAGTGGAGAGGCCAATCGGCTGTACGTG
TGATGATCAGCCTTTCAATTCATCAATCAATCAGTCAATATTTCAAATCA
AGCAATCAAATCAAACATATATCTTCGTGACACATCCCGTGACAGGGCCA
ATGCACAACAGACAAACCCACCAATAACCCGCGCCCCCCTCTCTCCCTCT
GGCGAACCCCCTTGCTCTCGTGTTTGTTGCTTCGTGGCCGCCACCGCCGC
TGCCGCCGCCGCCACAATCCACGCGTGATGTCGGTGTCGCGGCATGGTGC
CGCCGGAAACGTGCTGCTTGTTTTTTACCGACACAAAACGCAGAGGTGGC
GAAGCGCCTGGAGTTCGTATTCCCCGCTGTGCTCCGGGCTTCCTTCGTGC
TTTTTTCGGTCACGTATTCTTACGCGGTGCTTGCTTACGCCATGTACTGC
GACACCCCCCTTGGCAAGAAACCGCTGGACTCCATAGCAGACCACAGCAT
GACACAAAGGTGAATGGGCGGGAAAAGCCGTACGAGAAGGAGGGTGTCAC
ACTTGCGAGGTTTTGAGGGTTTCGCGGGAAGTCTTGTGTTTTGTGTTTTT
TGCACATATATGGTAAGACGTGTTTGTTTTTCCGACGTCCGTCTGTGGTC
ATGAGGGATCATCCCATGTCTCCCCGGTTCGTACCTTAGGTTTTTATCGG
GAATGGGGAGGATGCTAGAGCTGGAATCTGGCTTTTGTACGAGCGAGGGT
ATCGGTATGTTGCATGTTCGGAGAAACGTTCGGAGAATGTTCGAAGACTG
CTCGGAGAATGTTACAGATCGATGCATTGCCTCGAGATTCTAGAAGGCGT
ATGATAGTTACCTCAGTCAATCTGCAGTGGTGTCGCAGTAGAGCTCAGAC
TCGTGCACAACGCCGAGGGCTAGTTGGAAAGACAACGCTGAGGGCTTTCA
ATTGTTGGAAGGACAGCCGGTCGAACACCTGCAGTCTATTATAGTGAGCA
GGACTACTGCCGCTGTTGGTTTATGTCGGTTGTACTGCTGTGGGTTGTAC
TGCTGCTACAATAGTGTGGGCAGGATTGCTACTGTTGGTTCTCTTCTCCT
CTTGTTACGATCGATCGTCCCGACTTGATCTCTTGTTCTGCGTTGGGTTG
GGTTCGGCACTCCCACATCTCGCCGATTTCTCGGATTTTGCTTACCCACG
CTGTCGCGCTTTCCGCGGCGGAGGTAGATAAAAAACTACGTTTTCTCCAA
CGCAATACGTAAACCCAAATCGAAAACAAAAGGTGGCTGTTCTACAAGGA
CGTGGTATCTTTCGAGTCCCTGCTCCAGTCGTTCGCTTCCATGACCGATG
TCATCATGCTCAGCAACTGGCCCATTTTCATGGACGCTGCGGCCGACGTG
AGCAACAGCTGGCTTACCAAGTTATTCTTCTACTCATTCAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11332:912..5256+

>mRNA_S-dermatodea_contig11332.861.1 ID=mRNA_S-dermatodea_contig11332.861.1|Name=mRNA_S-dermatodea_contig11332.861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at S-dermatodea_contig11332:912..5256+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTATCAGATTGTGCTTGAGGGAGATGACTTTGAAGACCGGCCGAGTTG
GGCATATCATCTGGGGGCGGTGCTCATCACGTACTTCTGCGTGAACGCCA
GCCTGAGAATGGTGGCCGAGGGACCTGTCAAGTACATCATGCTGTGGCGG
GGTATCAGATTGTGCTTGAGGGAGATGACTTTGAAGACCGGCCGAGTTGG
GCATATCATCTGGGGGCGGTGCTCATCACGTACTTCTGCGTGAACGCCAG
CCTGAGAATGGTGGCCGAGGGACCTGTCAAGTACATCATGCTGTGGCGAC
ACTCGCTCGGTATGGTGCTGAACCTGATCGGCGTGGCTTTCTACCTCGGG
CTATGGTTTGACGGCGAGGGGTGGCGCAACCTTTATCACATCTTGCAGGC
CTCTCGCTTAATGATTCTGTGGAACGTGCTCCACAAGATCGGGCCCACCA
GCGCTGACACTCGCTCGGTATGGTGCTGAACCTGATCGGCGTGGCTTTCT
ACCTCGGGCTATGGTTTGACGGCGAGGGGTGGCGCAACCTTTATCACATC
TTGCAGGCCTCTCGCTTAATGATTCTGTGGAACGTGCTCCACAAGATCGG
GCCCACCAGCGCTGAGGTGGCGAAGCGCCTGGAGTTCGTATTCCCCGCTG
TGCTCCGGGCTTCCTTCGTGCTTTTTTCGGTCACGTATTCTTACGCGGTG
CTTGCTTACGCCATGTACTGCGACACCCCCCTTGGCAAGAAACCGCTGGA
CTCCATAGCAGACCACAGCATGACACAAAGAGGTGGCGAAGCGCCTGGAG
TTCGTATTCCCCGCTGTGCTCCGGGCTTCCTTCGTGCTTTTTTCGGTCAC
GTATTCTTACGCGGTGCTTGCTTACGCCATGTACTGCGACACCCCCCTTG
GCAAGAAACCGCTGGACTCCATAGCAGACCACAGCATGACACAAAGGTGG
CTGTTCTACAAGGACGTGGTATCTTTCGAGTCCCTGCTCCAGTCGTTCGC
TTCCATGACCGATGTCATCATGCTCAGCAACTGGCCCATTTTCATGGACG
CTGCGGCCGACGTGAGCAACAGCTGGCTTACCAAGTTATTCTTCTACTCA
TTCAAGGTGGTGGCTGTTCTACAAGGACGTGGTATCTTTCGAGTCCCTGC
TCCAGTCGTTCGCTTCCATGACCGATGTCATCATGCTCAGCAACTGGCCC
ATTTTCATGGACGCTGCGGCCGACGTGAGCAACAGCTGGCTTACCAAGTT
ATTCTTCTACTCATTCAAGGTG
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