mRNA_S-dermatodea_contig11290.826.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11290.826.1
Unique NamemRNA_S-dermatodea_contig11290.826.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.240e-41
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            KGMRFVKNVGLGFKTPK AREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLH+VSKYRR
Sbjct:   60 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 130
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.860e-37
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            KGMRF KN+GLGFKTPKLA  GTYVDKKCPFTG+VSIRGRILKGLV+SAGKM NT VIRRDYLHYV+KYRR
Sbjct:   33 KGMRFYKNIGLGFKTPKLAISGTYVDKKCPFTGNVSIRGRILKGLVLSAGKMKNTCVIRRDYLHYVTKYRR 103
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 9.720e-36
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            KGMRF KN+GLGFKTPKLA EGTYVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLHY+SKYRR
Sbjct:   35 KGMRFYKNIGLGFKTPKLAIEGTYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYISKYRR 104
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A7S4UCS4_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UCS4_GUITH)

HSP 1 Score: 117 bits (292), Expect = 2.210e-32
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            K MRFVKNVGLG KTP  A E  YVDKKCPFTG+VSIRGRILKG VISAGKM  TI++RRDYLHY+ KYRR
Sbjct:   31 KPMRFVKNVGLGIKTPDAAIENPYVDKKCPFTGNVSIRGRILKGQVISAGKMKRTIIVRRDYLHYIRKYRR 101
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A6S8U5Q0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8U5Q0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.530e-32
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYR 210
            KG+R+V+NVGLGFKTPKLA EG+YVDKKCPFTG+VSIRGRILKG+VIS  KMT T+VIRRDYL++  KYR
Sbjct:   35 KGLRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVIST-KMTRTVVIRRDYLNWCGKYR 103
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 116 bits (291), Expect = 1.210e-31
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            K MR+ KNVGLG KTPK A EGTYVDKKCPFTGDV+IRGRILKGLVIS  KMT TI++RRDYLHY+ KYRR
Sbjct:   35 KPMRWTKNVGLGIKTPKNAVEGTYVDKKCPFTGDVAIRGRILKGLVIST-KMTRTIIVRRDYLHYIRKYRR 104
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: F0XZW5_AURAN (Ribosomal_S17_N domain-containing protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0XZW5_AURAN)

HSP 1 Score: 115 bits (287), Expect = 5.180e-31
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            KGMR+V+NVGLGFKTPKLA EG+YVDKKCPFTG+VSIRGRILKG+VIS  KM  T+VIRRDYL++  KYRR
Sbjct:   37 KGMRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVIST-KMKRTLVIRRDYLNWCGKYRR 106
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.230e-30
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            KGMR+VKN+GLGFKTP+ A EG YVD+KCPFTG+VSIRG+ILKG+VIS  KMT T+V+RRDYLH+V KY+R
Sbjct:   56 KGMRYVKNIGLGFKTPQRAIEGNYVDRKCPFTGNVSIRGKILKGIVIS-NKMTRTVVVRRDYLHFVRKYKR 125
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A7S3PX81_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX81_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.890e-30
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            K MRF ++VGLG KTP  A EGTYVDKKCPFTG+V+IRGRILKGLVIS  KM NT+VIRRDYLHY++KYRR
Sbjct:   38 KPMRFTRSVGLGIKTPDAAIEGTYVDKKCPFTGNVAIRGRILKGLVIS-NKMKNTVVIRRDYLHYITKYRR 107
[Close]
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Match: A0A7S0L9L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9L5_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 3.870e-30
Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 KGMRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 213
            KGMR+ KN+GLGFKTP  A EG+YVDKKCPFTG+VSIRGRILKG+V+S  KM  T+VIRRDYL Y+SKYRR
Sbjct:   34 KGMRYYKNIGLGFKTPTEAIEGSYVDKKCPFTGNVSIRGRILKGMVVS-NKMKRTVVIRRDYLKYISKYRR 103
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11290.826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI1.240e-4197.18Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA2.860e-3787.32Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA9.720e-3685.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4UCS4_GUITH2.210e-3278.87Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A6S8U5Q0_9STRA9.530e-3278.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4WCA2_9DINO1.210e-3180.28Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
F0XZW5_AURAN5.180e-3178.87Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A7R9U3I9_9STRA1.230e-3074.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3PX81_9STRA2.890e-3077.46Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0L9L5_9EUKA3.870e-3076.06Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11290contigS-dermatodea_contig11290:318..1234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue6.3e-31
Seed eggNOG ortholog2880.D7FQB6
Preferred nameRPS11
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1728@2759
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-01_006720.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11290.826.1prot_S-dermatodea_contig11290.826.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11290 318..1228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.4018576-CDS-S-dermatodea_contig11290:317..4041622924195.4018576-CDS-S-dermatodea_contig11290:317..404Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 318..404 -
1694079084.0785465-CDS-S-dermatodea_contig11290:317..4041694079084.0785465-CDS-S-dermatodea_contig11290:317..404Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 318..404 -
1622924195.4133492-CDS-S-dermatodea_contig11290:1105..12281622924195.4133492-CDS-S-dermatodea_contig11290:1105..1228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 1106..1228 -
1694079084.0896559-CDS-S-dermatodea_contig11290:1105..12281694079084.0896559-CDS-S-dermatodea_contig11290:1105..1228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11290 1106..1228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924195.4230287-UTR-S-dermatodea_contig11290:1228..12341622924195.4230287-UTR-S-dermatodea_contig11290:1228..1234Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11290 1229..1234 -
1694079084.101884-UTR-S-dermatodea_contig11290:1228..12341694079084.101884-UTR-S-dermatodea_contig11290:1228..1234Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11290 1229..1234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11290.826.1

>prot_S-dermatodea_contig11290.826.1 ID=prot_S-dermatodea_contig11290.826.1|Name=mRNA_S-dermatodea_contig11290.826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
MRFVKNVGLGFKTPKLAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKM
TNTIVIRRDYLHYVSKYRR*
back to top

mRNA from alignment at S-dermatodea_contig11290:318..1234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11290.826.1 ID=mRNA_S-dermatodea_contig11290.826.1|Name=mRNA_S-dermatodea_contig11290.826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=917bp|location=Sequence derived from alignment at S-dermatodea_contig11290:318..1234- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGCATGCGTTTCGTGAAGAACGTCGGTCTCGGGTTCAAGACCCCCAA
GCTGGCGAGGGAAGGAACCTACGTGGACAAGAAGTGCCCCTTCACGGGCG
ACGTGTCCATCCGCGGCCGCATCCTTAAGGTGACCAAGGAGGCAACTGCT
GGCCCGGCAACAGGTCGGGCCGATGGAATTGGATCGTGCCCGGCTTGTGT
TTTGCTTCTTGTTTGGAGGCGCCAGCGATGTCAAGTGATGTGCGCGCGCC
GCAGGTCGTTTCACTACTGTATAATACCGTAGGCGATATTTTTGGTGCTG
TGTCACGTGTAAAAAAGAACGCGAAAAGGCCAAATATGGTAAAAACACCT
TTTGGACAGACTAGACCGTATGCGCAGCGTTCAAGCTCTGGTGGGCTCGC
CGTACGCGAGCAGCGATGGTTTTGGGAAACACTGCGTGACAGGAATGGCG
GATGTCTGCTCTCTTTCCCTCTGGCACCTTCTTTAGAGCGTAGCCACGAC
GGTGGCTTTCTAAATACACATACACTGAAATCGGGAACGGGTGTCACGCG
TGGTTCGCGTCTGCGCTGTACATACAGTAAGGCGGATGAATTGTTTTTGT
GTGTGAAACGAACCTCGTGCTACAAGTACTTTACAGCAGTCGGCGCGACG
CTGCCATTTCTCCAGCGATTCTTCTGCAGACCAAGTAATTTTAACCTATA
CATCTATTAGCAGTACCCCGTGCAACGGTGGAAGCGTCGGGCTTGAGAGT
TGTCGTCCGAGGGCACCCAAATTCCGGATCACCTGTTAAATCTTGTTGCC
TGTCGTTTCTCTTCCTTGGTCACACCCCAGGGCCTCGTGATCTCCGCCGG
CAAGATGACCAACACCATCGTCATCCGCCGCGACTACCTGCACTACGTCT
CCAAGTACCGCCGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11290:318..1234-

>mRNA_S-dermatodea_contig11290.826.1 ID=mRNA_S-dermatodea_contig11290.826.1|Name=mRNA_S-dermatodea_contig11290.826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig11290:318..1234- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTTTCGTGAAGAACGTCGGTCTCGGGTTCAAGACCCCCAAGCTGGC
GAGGGAAGGAACCTACGTGGACAAGAAGTGCCCCTTCACGGGCGACGTGT
CCATCCGCGGCCGCATCCTTAAGATGCGTTTCGTGAAGAACGTCGGTCTC
GGGTTCAAGACCCCCAAGCTGGCGAGGGAAGGAACCTACGTGGACAAGAA
GTGCCCCTTCACGGGCGACGTGTCCATCCGCGGCCGCATCCTTAAGGGCC
TCGTGATCTCCGCCGGCAAGATGACCAACACCATCGTCATCCGCCGCGAC
TACCTGCACTACGTCTCCAAGTACCGCCGGTGAGGCCTCGTGATCTCCGC
CGGCAAGATGACCAACACCATCGTCATCCGCCGCGACTACCTGCACTACG
TCTCCAAGTACCGCCGGTGA
back to top