mRNA_S-dermatodea_contig1122.783.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1122.783.1
Unique NamemRNA_S-dermatodea_contig1122.783.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1122.783.1 vs. uniprot
Match: D7FSK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK6_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 2.500e-87
Identity = 178/391 (45.52%), Postives = 231/391 (59.08%), Query Frame = 1
Query:  991 GTVVIARLGSHASGVFVTITDIGRRVLIEARDFENGPLLAFSRASLEVWTAATGIPALKPPRDMEAFRKRLEDHLAQLLGAGFRSRTSQLVKKRATRDSQPSPSR-RWRGTLLHVSDIEMGD-EQIDDDYIGNAGS-LDDETQACSRSSGVTPLDPA-VGQQKALRLEMLTRMIDEYHAKHGRG----------DDRKGNPATIQKRSREPSAGQAVAFADQG------GARIEASADSDKGLTLPAIADPPGSESTPSLVERSASPALPARYLCKCCGGEGGKGHGRRCRHTFRRCGLCRVEEVRRVLYGTERGRGRGDSDAKRKGHKPALPASVGVRREGDGEQEEEYDWVTDTDEENPEYECDVCGRVIQETADRFHCETCGDYDMCQ 2103
            GTV IARLGSHA GVFV +TD GRR+LIEARDFE GPLLA S  SLE WTA TGI  L PP D  AF+K LE+ LA LLGAGFRSRTS+L +KRA R++Q      RWRGTLL +S++E G   Q+++D  G+  +  + +         ++P D   + Q++ALRLEMLTRM+D++HAKHGR            +++G  A     +R+P+   A    D+       G R+                     E    +V           ++      +GG+GHGR+C HTFRRCG CRVEEVRRVL     GR R           P+LP       + D  +EE+++WVTD+DEE+PE+ECD CGRVI++T+DRFHCETCGDYD+ Q
Sbjct:    2 GTVPIARLGSHAEGVFVVVTDGGRRLLIEARDFERGPLLAKSTVSLEDWTATTGIATLSPPTDNRAFKKILEEQLAALLGAGFRSRTSRLERKRAAREAQQQGGGVRWRGTLLELSEMEKGRLGQLEEDDNGSENNDANPDRPPPKLPLLLSPRDSTPLEQKRALRLEMLTRMVDDFHAKHGRSRRXXXXXXXXXEKRGVGAPAPGDARDPTTVVATGCDDESAVGGHDGERVR--------------------EGPVHIVSNEGQDGENDPHITTANQAKGGRGHGRKCEHTFRRCGFCRVEEVRRVLGIRAPGRTREPVQESMVVRVPSLPQLKFGDDQDDDNEEEDFEWVTDSDEEDPEFECDSCGRVIEDTSDRFHCETCGDYDLMQ 372          
BLAST of mRNA_S-dermatodea_contig1122.783.1 vs. uniprot
Match: A0A6H5KMB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB6_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 6.810e-63
Identity = 157/359 (43.73%), Postives = 194/359 (54.04%), Query Frame = 1
Query:  271 VVKAIGGDLTLSLLRPSR-----GERPHCDGVGHKRNEGAEESG---KCGAKRAKSLRQSLSLQATWRDWERLGYGPLQWMSHTQKEHLGSLALSWVTFKT-----KQHQSRAGEESP----------EAFLQLRPTIARISRDCDMTT-AVGFS------------------------------------GHNKKSRRARVEIRDEGCVFRVNVEVDAEVSSQGRR------LVQVFGQEAWRETGLGELLWMERSWRQYLAGRLSQQVAIRTAVDCGSEISGQDVDNEDQI---LIIRSDMPVRYWSGTVVIARLGSHASGVFVTITDIGRRVLIEARDFENGPLLAFSRASLEVWT 1140
            +VKA GG+LTLSL +PSR     G      GV  +    A  SG     G     ++R+SL+L A W DW   GYGPLQWMSH QK  +  L+L WV+F+T     ++  +    E+P          EAFL   P ++ ++RD   ++ A G S                                    G  + SR +RV +RDEG V RV V V+AE  + GR       L Q FG+E+WRETGLGELLW++ S RQYLA RL+QQVAI    D        D DN  +I   L+I SD+P+ YW GTV IARLGSHA GVFV ITD GRR+LIEARDFE GPLLA S  SLE WT
Sbjct:    1 MVKATGGELTLSLFQPSRAAPSTGGTTRPAGVRGRGAAAANGSGVHSTAGDPGRAAMRRSLTLVAAWADWAEAGYGPLQWMSHEQKVFIARLSLYWVSFRTPARGFEEKNAPNANETPVRHRRRRTTKEAFLHFHPILSSVTRDVGKSSGAPGSSVRGTGXXXXXXXXXXXXXXXXXTSSRTAPRGGSEIFGGEETSRTSRVLVRDEGGVLRVEV-VEAERKNVGRSKSGVSMLDQAFGKESWRETGLGELLWLDCSCRQYLALRLAQQVAIVVDDDRDGRGGQHDQDNVLKIKPRLVIISDLPLPYWMGTVPIARLGSHAEGVFVMITDAGRRLLIEARDFEGGPLLAKSTVSLEDWT 358          
BLAST of mRNA_S-dermatodea_contig1122.783.1 vs. uniprot
Match: D7FSK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 9.310e-27
Identity = 82/205 (40.00%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  415 LRQSLSLQATWRDWERLGYGPLQWMSHTQKEHLGSLALSWVTFKTKQHQSRA--GEESP----------EAFLQLRPTIARISR-----DCDMTTAVGFSGHN-------------------------KKSRRARVEIRDEGCVFRVNVEVDAEVSSQGRR------LVQVFGQEAWRETGLGELLWMERSWRQYLAGRLSQQVA 885
            +R+SLSL A W DW   GYGPLQWMSH QK  +  L+L WV+F+    +  A    E+P          EAFL  RP ++ ++R     + D  +AV  +G +                         + SR +RV +RDEG V RV V V+AE  + GR       L + FG+EAWRETGL ELLW++ S RQYLA RL+QQ++
Sbjct:    1 MRRSLSLVAAWADWAEAGYGPLQWMSHEQKVFIARLSLYWVSFRRGFEEKNAPTANETPVQHHRRRTTKEAFLHFRPILSSVTRVVGKSNGDPGSAVPGTGGSGALVVVGGASSRTVPREGSEIFGGGETSRTSRVFVRDEGGVLRVEV-VEAERKNGGRPKSGVSILDEAFGKEAWRETGLEELLWLDCSCRQYLALRLAQQLS 204          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1122.783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSK6_ECTSI2.500e-8745.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB6_9PHAE6.810e-6343.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK7_ECTSI9.310e-2740.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1122contigS-dermatodea_contig1122:4209..8638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_000340.1
Exons7
Model size2241
Cds size2241
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.3476753-CDS-S-dermatodea_contig1122:4208..43521622924192.3476753-CDS-S-dermatodea_contig1122:4208..4352Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 4209..4352 -
1694079081.876617-CDS-S-dermatodea_contig1122:4208..43521694079081.876617-CDS-S-dermatodea_contig1122:4208..4352Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 4209..4352 -
1622924192.3570905-CDS-S-dermatodea_contig1122:4759..49361622924192.3570905-CDS-S-dermatodea_contig1122:4759..4936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 4760..4936 -
1694079081.8893087-CDS-S-dermatodea_contig1122:4759..49361694079081.8893087-CDS-S-dermatodea_contig1122:4759..4936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 4760..4936 -
1622924192.3671057-CDS-S-dermatodea_contig1122:5416..56221622924192.3671057-CDS-S-dermatodea_contig1122:5416..5622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 5417..5622 -
1694079081.898957-CDS-S-dermatodea_contig1122:5416..56221694079081.898957-CDS-S-dermatodea_contig1122:5416..5622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 5417..5622 -
1622924192.3853967-CDS-S-dermatodea_contig1122:5679..60341622924192.3853967-CDS-S-dermatodea_contig1122:5679..6034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 5680..6034 -
1694079081.909437-CDS-S-dermatodea_contig1122:5679..60341694079081.909437-CDS-S-dermatodea_contig1122:5679..6034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 5680..6034 -
1622924192.3943074-CDS-S-dermatodea_contig1122:6350..65681622924192.3943074-CDS-S-dermatodea_contig1122:6350..6568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 6351..6568 -
1694079081.9201772-CDS-S-dermatodea_contig1122:6350..65681694079081.9201772-CDS-S-dermatodea_contig1122:6350..6568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 6351..6568 -
1622924192.40455-CDS-S-dermatodea_contig1122:7125..73871622924192.40455-CDS-S-dermatodea_contig1122:7125..7387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 7126..7387 -
1694079081.9325237-CDS-S-dermatodea_contig1122:7125..73871694079081.9325237-CDS-S-dermatodea_contig1122:7125..7387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 7126..7387 -
1622924192.4187849-CDS-S-dermatodea_contig1122:7759..86381622924192.4187849-CDS-S-dermatodea_contig1122:7759..8638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 7760..8638 -
1694079081.9659817-CDS-S-dermatodea_contig1122:7759..86381694079081.9659817-CDS-S-dermatodea_contig1122:7759..8638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1122 7760..8638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1122.783.1prot_S-dermatodea_contig1122.783.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1122 4209..8638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1122.783.1

>prot_S-dermatodea_contig1122.783.1 ID=prot_S-dermatodea_contig1122.783.1|Name=mRNA_S-dermatodea_contig1122.783.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=747bp
AHSVFDGIPTSTLTPTKLHTPPRKRSAIQRREDGQNETLCSSGALPGLCS
CRVVLRVGTTLPFVETGVVNDTGSNEGAGLSSTLDGRWLVVVKAIGGDLT
LSLLRPSRGERPHCDGVGHKRNEGAEESGKCGAKRAKSLRQSLSLQATWR
DWERLGYGPLQWMSHTQKEHLGSLALSWVTFKTKQHQSRAGEESPEAFLQ
LRPTIARISRDCDMTTAVGFSGHNKKSRRARVEIRDEGCVFRVNVEVDAE
VSSQGRRLVQVFGQEAWRETGLGELLWMERSWRQYLAGRLSQQVAIRTAV
DCGSEISGQDVDNEDQILIIRSDMPVRYWSGTVVIARLGSHASGVFVTIT
DIGRRVLIEARDFENGPLLAFSRASLEVWTAATGIPALKPPRDMEAFRKR
LEDHLAQLLGAGFRSRTSQLVKKRATRDSQPSPSRRWRGTLLHVSDIEMG
DEQIDDDYIGNAGSLDDETQACSRSSGVTPLDPAVGQQKALRLEMLTRMI
DEYHAKHGRGDDRKGNPATIQKRSREPSAGQAVAFADQGGARIEASADSD
KGLTLPAIADPPGSESTPSLVERSASPALPARYLCKCCGGEGGKGHGRRC
RHTFRRCGLCRVEEVRRVLYGTERGRGRGDSDAKRKGHKPALPASVGVRR
EGDGEQEEEYDWVTDTDEENPEYECDVCGRVIQETADRFHCETCGDYDMC
QACFLSHKALAGHENGHEAGTGVGHVASHDVKRIMGNAAPVPGWSS*
back to top

mRNA from alignment at S-dermatodea_contig1122:4209..8638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1122.783.1 ID=mRNA_S-dermatodea_contig1122.783.1|Name=mRNA_S-dermatodea_contig1122.783.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4430bp|location=Sequence derived from alignment at S-dermatodea_contig1122:4209..8638- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCATTCGGTGTTCGACGGGATCCCCACCTCGACGTTGACGCCAACAAA GCTTCATACCCCTCCACGAAAAAGATCGGCGATTCAACGGCGCGAGGACG GCCAAAACGAAACTCTGTGCTCTTCTGGTGCTCTGCCGGGCCTGTGCTCC TGCAGGGTTGTTCTCCGAGTGGGAACAACGCTTCCCTTTGTAGAGACCGG AGTCGTCAACGACACTGGAAGCAACGAGGGTGCCGGTTTGAGTTCGACAT TAGACGGGCGGTGGTTAGTGGTGGTCAAAGCTATCGGAGGCGATCTTACG CTGTCTCTCTTACGACCGTCAAGAGGAGAACGGCCACACTGTGATGGTGT CGGACATAAGAGAAACGAAGGTGCAGAGGAAAGTGGAAAATGTGGAGCCA AAAGAGCGAAGAGCCTGAGACAATCGCTGTCGCTGCAAGCAACTTGGAGG GACTGGGAGCGGCTCGGGTACGGTCCCCTACAGTGGATGTCTCACACTCA GAAGGAGCACCTTGGCAGTCTGGCGCTTTCCTGGGTCACTTTCAAGACAA AGCAACACCAATCTCGAGCGGGAGAAGAGAGCCCCGAGGCGTTTCTGCAG CTCCGCCCGACCATCGCCAGGATTTCACGGGATTGTGACATGACTACAGC GGTGGGGTTTTCCGGCCACAATAAAAAATCCAGGAGGGCTCGGGTAGAAA TCAGAGATGAGGGGTGCGTGTTTAGAGTGAACGTTGAGGTAGATGCAGAG GTTTCTTCGCAGGGCAGGCGATTGGTGCAAGTGTTCGGACAGGAGGCCTG GCGAGAAACGGGATTGGGAGAGCTTCTGTGGATGGAGCGCTCGTGGCGGC AGTATTTGGCTGGCCGGCTTTCGCAGCAGGTGGAGTTCGCATCGACCTCT TTGAGGCCACTCGCGCCATAGCTTGTCGTCGTAGGCTCCATCGCCAATAC AGTCGCCGCACCTATGAGTATGTGATATATCGCACTCACACGAACGTGGT GAACCCTTCTCGCAGCCGATTACGCTCTGAGCAGCTGGCGACCGCGATGG CGCACTCTCAGAAATGCAGTACTGCTGCGGCGACTGCCTACTTTATGAGT ATTGTCGGCACTATCATAGTGCCCTCGGAAATTGAATCAGCTGCTGACAA CAAAACTACCGCAGTCGGAGAGCACGATTAGGAACACGAGGCCGCTCTCT CTGTTTCCCTAGATTCTCGTAACAAAGTGGTTAACGTGTTCCCTTTTGTA GGTGGCTATCCGTACTGCTGTCGATTGTGGTAGCGAAATCAGCGGGCAAG ACGTCGACAACGAGGACCAAATTCTTATTATCCGCTCAGACATGCCGGTG CGGTACTGGTCTGGCACTGTGGTCATTGCTCGACTTGGATCCCATGCGTC GGGAGTCTTTGTTACCATCACAGACATTGGACGCCGGGTGCTGATCGAGG CTAGGGATTTTGAAAACGGGCCGCTGCTAGCATTTTCAAGGGCATCACTG GAGGTTTGGACAGGTGAGAACGCAGATCAGCGATAGAAGGTGTGCACGCC TACAATGCCTGAGTGGTGCATACATCTACTCATGCCACCAATGTGCTTAT CAGCAAGGCCCTCGAACAACCTAAGCTTGCTAGCAAAAAAACTAAAGCAT CAGTATTGGACGAAAAACACACCGGTGAGGGGGGCGGGAAGTGGGTTATA TGGGGATTCGACAGCATGTTGGGAGAAATTGGCGCATCCCAACAGCACAT GCGATCGAAGGGCTATTAACGCGGCGCCAAGATTCACCAGGAATCCTGGC CCTTTACCGCCTGCCTGTAGCTGCTTTGAAAGGTCGGCCACCATCTTCTG CTGTGTCCATGCCCAACCTGGGCCCGACTGCGCCTAGTGTACTGCATGTA TCTTGGAACTTCACGTTCTTCACGTTGCGTCCGTTGCTCGCCAATGCACA TACTACTGCACGAAACTCTCCTCGCACAGTGCTGAAGACTAACCAAAACC GAAACGTTTACGCCAGTCGTTGAATCCCGCCCGCCACCGCGGCGCTATCG CCGTTTCTACCATCATGCAGCGGCCACGGGTATTCCCGCTCTCAAGCCTC CCAGAGATATGGAAGCCTTTCGGAAGAGGCTGGAAGACCATTTGGCTCAA TTATTGGGTGCGGGTTTCCGCAGCCGCACGAGCCAGTTGGTGAAAAAACG CGCGACCCGAGATAGTCAGCCATCTCCAAGCAGGCGATGGCGAGGGACTC TGTTACACGTTTCCGACATTGAGATGGGTGACGAGCAGGTGACACACACA TCAGTTTAGCGGATATATGGTAAAGGTATTTTGTATTCCTCTTGTGGCTC CAGGACGTACTTCGACGCTTATCTTCTGCGACTCGTTGTCGCCCTCGTAC CCCTTCCGCAATGGAAGAAACAAATTAAAAATGTACATTTTCTTCCAGAA GTAGGAAAAAATCGCGACAACAGCGGCGTTCCGTTTCTAAATCATGTCTT CGTGTGACTGTCGGTGCCACCTAGTTTGCCTCCGCTCTACCCCAAGCCTC GATCAATCCCCCAAACGTGTCTTGGCGACCTCCGACGCCGCATGTCGGCT GTAGATCGACGACGACTACATCGGGAACGCAGGGAGCTTGGACGATGAGA CCCAAGCATGCTCCCGGTCGTCTGGCGTAACGCCACTTGACCCAGCGGTA GGCCAACAGAAGGCGTTGCGGCTGGAAATGCTGACCAGGATGATAGACGA GTACCATGCTAAGCACGGCCGTGGCGACGACCGCAAGGGGAACCCAGCTA CTATTCAGAAACGATCACGCGAACCCTCTGCCGGGCAAGCGGTCGCCTTT GCCGACCAGGGGGGGGCGAGAATCGAGGCCAGTGCAGATAGCGACAAGGG ATTAACGCTTCCAGCGATTGCAGACCCCCCTGGATCGGAATCAACGCCAT CTCTCGTTGGTAGCGATGCTCGTTGCCTCTTCAATCAGAAGCCACCTTCT TTGGAAGACAAGCCAGAGCGTTCAGCAAGCCCCGCCCTTCCGGCCAGATA CTTGTGCAAGTGCTGTGGGGGCGAGGGCGGCAAGGGTCACGGGCGACGGT GTAGGCACACGTTCAGAAGGTGCGGCTTGTGCAGGGTAGAAGAAGTGAGG CGGGTGCTATATGGCACGGAGCGCGGCCGCGGCCGCGGGGATTCAGATGC GAAACGGAAGGGGCACAAGCCGGTGAGGGCCGTACTGACGTTTTTTCTGG CAAGCCGGGGCCGTGATTTTGTTGTCTAGTTTGTCTGCGTCCGTCAATCC AACGTAGGTGCGTCCACCAGTCGAAGTTGTTGCATCGCAGTTGGTATTCC CAAAGGCTGGGCGTATTTTCGCCGAAAAACGCACCAACCGTAGGCATGTA GTCAAGGTATCCCCTCTCGCTCCTGGTCTGCACGAACAGTTTGTTGCGCG AAGAAGATACGGCGAGGGCATGACACCACGCTTTGTTCTTAGGCGTACGG GCGTGTAGTATCGCCTTTACTGCGTGCGCTGGAGCACACTGCGATAATAG CTTGTCAGCGAATGAGCTTTTGTTTGAACGATGCCGCACGTGAGTTAGCC GGGCAGGACATGAGGTATTTGCCATCTATTTTGAATACAGCCCATCATCT ACATGCACATAAATGACATGCGACCGGAACATGTCCACAGGTGCATGGCA AGGCGTTGCCGGCCAGCGTGGGAGTGCGTCGAGAAGGCGACGGAGAACAG GAGGAGGAATACGACTGGGTGACAGACACCGACGAGGAAAATCCCGAGTA CGAGTGCGACGTGTGCGGCAGGGTTATCCAAGAGACAGCTGATCGCTTCC ACTGCGAGACGTGCGGGGACTATGACATGGTGAGAACAAGAAGAGACTCG CGATCAGTTCCATCTCAGAAAGGTGTCAGGGTGAATTATTGTGTGACAGA ATGATCTACCCTGCTGTGTTTGCCGAATCCTCTGTAGACGATACAGACAG CAGTCCCGAAAAGTTTGCAGACGACCACACATCGATTCACTTTGATTTTC GCGCTACCAGCTGCTTACGTTTCGTGTGCAGTATTACCCAGAAAGCCCGT GGTCGGCCGAAGGGCGGTTACGTTTCTGGATAGAATAACAGTTGCTTTCA ATATATACATCAAATATAGGACCGGGCGGGGAAAACCGCCACAGCAAACA ACGTCCCAACGAATCTATGATCTATAACGCAACCCTCTCTCTCCCCGCCC CCCGCCCCCCGCCCCCTCCGCTGGGCACGAGTGTAGTGCCAGGCATGTTT CCTGTCGCACAAGGCACTTGCCGGACACGAAAACGGACACGAGGCCGGCA CCGGCGTTGGCCACGTTGCGTCTCACGACGTTAAACGAATCATGGGCAAT GCTGCTCCTGTCCCGGGCTGGAGCTCTTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1122:4209..8638-

>mRNA_S-dermatodea_contig1122.783.1 ID=mRNA_S-dermatodea_contig1122.783.1|Name=mRNA_S-dermatodea_contig1122.783.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4482bp|location=Sequence derived from alignment at S-dermatodea_contig1122:4209..8638- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCATTCGGTGTTCGACGGGATCCCCACCTCGACGTTGACGCCAACAAA
GCTTCATACCCCTCCACGAAAAAGATCGGCGATTCAACGGCGCGAGGACG
GCCAAAACGAAACTCTGTGCTCTTCTGGTGCTCTGCCGGGCCTGTGCTCC
TGCAGGGTTGTTCTCCGAGTGGGAACAACGCTTCCCTTTGTAGAGACCGG
AGTCGTCAACGACACTGGAAGCAACGAGGGTGCCGGTTTGAGTTCGACAT
TAGACGGGCGGTGGTTAGTGGTGGTCAAAGCTATCGGAGGCGATCTTACG
CTGTCTCTCTTACGACCGTCAAGAGGAGAACGGCCACACTGTGATGGTGT
CGGACATAAGAGAAACGAAGGTGCAGAGGAAAGTGGAAAATGTGGAGCCA
AAAGAGCGAAGAGCCTGAGACAATCGCTGTCGCTGCAAGCAACTTGGAGG
GACTGGGAGCGGCTCGGGTACGGTCCCCTACAGTGGATGTCTCACACTCA
GAAGGAGCACCTTGGCAGTCTGGCGCTTTCCTGGGTCACTTTCAAGACAA
AGCAACACCAATCTCGAGCGGGAGAAGAGAGCCCCGAGGCGTTTCTGCAG
CTCCGCCCGACCATCGCCAGGATTTCACGGGATTGTGACATGACTACAGC
GGTGGGGTTTTCCGGCCACAATAAAAAATCCAGGAGGGCTCGGGTAGAAA
TCAGAGATGAGGGGTGCGTGTTTAGAGTGAACGTTGAGGTAGATGCAGAG
GTTTCTTCGCAGGGCAGGCGATTGGTGCAAGTGTTCGGACAGGAGGCCTG
GCGAGAAACGGGATTGGGAGAGCTTCTGTGGATGGAGCGCTCGTGGCGGC
AGTATTTGGCTGGCCGGCTTTCGCAGCAGGCTCATTCGGTGTTCGACGGG
ATCCCCACCTCGACGTTGACGCCAACAAAGCTTCATACCCCTCCACGAAA
AAGATCGGCGATTCAACGGCGCGAGGACGGCCAAAACGAAACTCTGTGCT
CTTCTGGTGCTCTGCCGGGCCTGTGCTCCTGCAGGGTTGTTCTCCGAGTG
GGAACAACGCTTCCCTTTGTAGAGACCGGAGTCGTCAACGACACTGGAAG
CAACGAGGGTGCCGGTTTGAGTTCGACATTAGACGGGCGGTGGTTAGTGG
TGGTCAAAGCTATCGGAGGCGATCTTACGCTGTCTCTCTTACGACCGTCA
AGAGGAGAACGGCCACACTGTGATGGTGTCGGACATAAGAGAAACGAAGG
TGCAGAGGAAAGTGGAAAATGTGGAGCCAAAAGAGCGAAGAGCCTGAGAC
AATCGCTGTCGCTGCAAGCAACTTGGAGGGACTGGGAGCGGCTCGGGTAC
GGTCCCCTACAGTGGATGTCTCACACTCAGAAGGAGCACCTTGGCAGTCT
GGCGCTTTCCTGGGTCACTTTCAAGACAAAGCAACACCAATCTCGAGCGG
GAGAAGAGAGCCCCGAGGCGTTTCTGCAGCTCCGCCCGACCATCGCCAGG
ATTTCACGGGATTGTGACATGACTACAGCGGTGGGGTTTTCCGGCCACAA
TAAAAAATCCAGGAGGGCTCGGGTAGAAATCAGAGATGAGGGGTGCGTGT
TTAGAGTGAACGTTGAGGTAGATGCAGAGGTTTCTTCGCAGGGCAGGCGA
TTGGTGCAAGTGTTCGGACAGGAGGCCTGGCGAGAAACGGGATTGGGAGA
GCTTCTGTGGATGGAGCGCTCGTGGCGGCAGTATTTGGCTGGCCGGCTTT
CGCAGCAGGTGGCTATCCGTACTGCTGTCGATTGTGGTAGCGAAATCAGC
GGGCAAGACGTCGACAACGAGGACCAAATTCTTATTATCCGCTCAGACAT
GCCGGTGCGGTACTGGTCTGGCACTGTGGTCATTGCTCGACTTGGATCCC
ATGCGTCGGGAGTCTTTGTTACCATCACAGACATTGGACGCCGGGTGCTG
ATCGAGGCTAGGGATTTTGAAAACGGGCCGCTGCTAGCATTTTCAAGGGC
ATCACTGGAGGTTTGGACAGGTGGCTATCCGTACTGCTGTCGATTGTGGT
AGCGAAATCAGCGGGCAAGACGTCGACAACGAGGACCAAATTCTTATTAT
CCGCTCAGACATGCCGGTGCGGTACTGGTCTGGCACTGTGGTCATTGCTC
GACTTGGATCCCATGCGTCGGGAGTCTTTGTTACCATCACAGACATTGGA
CGCCGGGTGCTGATCGAGGCTAGGGATTTTGAAAACGGGCCGCTGCTAGC
ATTTTCAAGGGCATCACTGGAGGTTTGGACAGCGGCCACGGGTATTCCCG
CTCTCAAGCCTCCCAGAGATATGGAAGCCTTTCGGAAGAGGCTGGAAGAC
CATTTGGCTCAATTATTGGGTGCGGGTTTCCGCAGCCGCACGAGCCAGTT
GGTGAAAAAACGCGCGACCCGAGATAGTCAGCCATCTCCAAGCAGGCGAT
GGCGAGGGACTCTGTTACACGTTTCCGACATTGAGATGGGTGACGAGCAG
CGGCCACGGGTATTCCCGCTCTCAAGCCTCCCAGAGATATGGAAGCCTTT
CGGAAGAGGCTGGAAGACCATTTGGCTCAATTATTGGGTGCGGGTTTCCG
CAGCCGCACGAGCCAGTTGGTGAAAAAACGCGCGACCCGAGATAGTCAGC
CATCTCCAAGCAGGCGATGGCGAGGGACTCTGTTACACGTTTCCGACATT
GAGATGGGTGACGAGCAGATCGACGACGACTACATCGGGAACGCAGGGAG
CTTGGACGATGAGACCCAAGCATGCTCCCGGTCGTCTGGCGTAACGCCAC
TTGACCCAGCGGTAGGCCAACAGAAGGCGTTGCGGCTGGAAATGCTGACC
AGGATGATAGACGAGTACCATGCTAAGCACGGCCGTGGCGACGACCGCAA
GGGGAACCCAGCTACTATTCAGAAACGATCACGCGAACCCTCTGCCGGGC
AAGCGGTCGCCTTTGCCGACCAGGGGGGGGCGAGAATCGAGGCCAGTGCA
GATAGCGACAAGGGATTAACGCTTCCAGCGATTGCAGACCCCCCTGGATC
GGAATCAACGCCATCTCTCGTTGATCGACGACGACTACATCGGGAACGCA
GGGAGCTTGGACGATGAGACCCAAGCATGCTCCCGGTCGTCTGGCGTAAC
GCCACTTGACCCAGCGGTAGGCCAACAGAAGGCGTTGCGGCTGGAAATGC
TGACCAGGATGATAGACGAGTACCATGCTAAGCACGGCCGTGGCGACGAC
CGCAAGGGGAACCCAGCTACTATTCAGAAACGATCACGCGAACCCTCTGC
CGGGCAAGCGGTCGCCTTTGCCGACCAGGGGGGGGCGAGAATCGAGGCCA
GTGCAGATAGCGACAAGGGATTAACGCTTCCAGCGATTGCAGACCCCCCT
GGATCGGAATCAACGCCATCTCTCGTTGAGCGTTCAGCAAGCCCCGCCCT
TCCGGCCAGATACTTGTGCAAGTGCTGTGGGGGCGAGGGCGGCAAGGGTC
ACGGGCGACGGTGTAGGCACACGTTCAGAAGGTGCGGCTTGTGCAGGGTA
GAAGAAGTGAGGCGGGTGCTATATGGCACGGAGCGCGGCCGCGGCCGCGG
GGATTCAGATGCGAAACGGAAGGGGCACAAGCCGAGCGTTCAGCAAGCCC
CGCCCTTCCGGCCAGATACTTGTGCAAGTGCTGTGGGGGCGAGGGCGGCA
AGGGTCACGGGCGACGGTGTAGGCACACGTTCAGAAGGTGCGGCTTGTGC
AGGGTAGAAGAAGTGAGGCGGGTGCTATATGGCACGGAGCGCGGCCGCGG
CCGCGGGGATTCAGATGCGAAACGGAAGGGGCACAAGCCGGCGTTGCCGG
CCAGCGTGGGAGTGCGTCGAGAAGGCGACGGAGAACAGGAGGAGGAATAC
GACTGGGTGACAGACACCGACGAGGAAAATCCCGAGTACGAGTGCGACGT
GTGCGGCAGGGTTATCCAAGAGACAGCTGATCGCTTCCACTGCGAGACGT
GCGGGGACTATGACATGGCGTTGCCGGCCAGCGTGGGAGTGCGTCGAGAA
GGCGACGGAGAACAGGAGGAGGAATACGACTGGGTGACAGACACCGACGA
GGAAAATCCCGAGTACGAGTGCGACGTGTGCGGCAGGGTTATCCAAGAGA
CAGCTGATCGCTTCCACTGCGAGACGTGCGGGGACTATGACATGTGCCAG
GCATGTTTCCTGTCGCACAAGGCACTTGCCGGACACGAAAACGGACACGA
GGCCGGCACCGGCGTTGGCCACGTTGCGTCTCACGACGTTAAACGAATCA
TGGGCAATGCTGCTCCTGTCCCGGGCTGGAGCTCTTGATGCCAGGCATGT
TTCCTGTCGCACAAGGCACTTGCCGGACACGAAAACGGACACGAGGCCGG
CACCGGCGTTGGCCACGTTGCGTCTCACGACGTTAAACGAATCATGGGCA
ATGCTGCTCCTGTCCCGGGCTGGAGCTCTTGA
back to top