mRNA_S-dermatodea_contig11215.781.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11215.781.1
Unique NamemRNA_S-dermatodea_contig11215.781.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11215.781.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.250e-20
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:   46 SPVRHQAQVTFAEVGPIVLDPDVGSEVDTLLVED-VSVFKGLVRRDTPGGTVRVRVEVGREQIRVLVEPDPPADA 267
            SP R Q QV+FAEVGPIVLD  VG+EVD LL  D  +VF+GLVRRDTPG TVRVRVEVGREQIRV+ +P   A A
Sbjct:  544 SPQRQQDQVSFAEVGPIVLDSAVGAEVDKLLSADGPAVFRGLVRRDTPGETVRVRVEVGREQIRVVAQPGDAAAA 618
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BLAST of mRNA_S-dermatodea_contig11215.781.1 vs. uniprot
Match: D7FUZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.350e-20
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   46 SPVRHQAQVTFAEVGPIVLDPDVGSEVDTLLVED-VSVFKGLVRRDTPGGTVRVRVEVGREQIRVLVEP-DPPADANG 273
            SP R Q QV+FAE GPIVLD  VG+EVD LL  D  +VF+GLVRRDTPG TVRVRVEVGREQIRV+ EP D  A A+G
Sbjct:   90 SPQRQQDQVSFAEGGPIVLDSPVGAEVDKLLSADGPAVFRGLVRRDTPGETVRVRVEVGREQIRVVAEPGDAAAAADG 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11215.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZQ7_9PHAE2.250e-2070.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ4_ECTSI3.350e-2070.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11215contigS-dermatodea_contig11215:2496..6200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size431
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11215.781.1prot_S-dermatodea_contig11215.781.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11215 2496..6200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.1980395-CDS-S-dermatodea_contig11215:2495..25791622924192.1980395-CDS-S-dermatodea_contig11215:2495..2579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11215 2496..2579 +
1694079081.767967-CDS-S-dermatodea_contig11215:2495..25791694079081.767967-CDS-S-dermatodea_contig11215:2495..2579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11215 2496..2579 +
1622924192.2082276-CDS-S-dermatodea_contig11215:3473..36171622924192.2082276-CDS-S-dermatodea_contig11215:3473..3617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11215 3474..3617 +
1694079081.7754323-CDS-S-dermatodea_contig11215:3473..36171694079081.7754323-CDS-S-dermatodea_contig11215:3473..3617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11215 3474..3617 +
1622924192.216389-CDS-S-dermatodea_contig11215:5999..62001622924192.216389-CDS-S-dermatodea_contig11215:5999..6200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11215 6000..6200 +
1694079081.7854583-CDS-S-dermatodea_contig11215:5999..62001694079081.7854583-CDS-S-dermatodea_contig11215:5999..6200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11215 6000..6200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11215.781.1

>prot_S-dermatodea_contig11215.781.1 ID=prot_S-dermatodea_contig11215.781.1|Name=mRNA_S-dermatodea_contig11215.781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
RIRVLGGGVRVEVPSSPVRHQAQVTFAEVGPIVLDPDVGSEVDTLLVEDV
SVFKGLVRRDTPGGTVRVRVEVGREQIRVLVEPDPPADANGTWGASTTGT
ASEKDGEAATDAADTGEGVVDASDGGADEEGSGNGGCPPGGGG
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mRNA from alignment at S-dermatodea_contig11215:2496..6200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11215.781.1 ID=mRNA_S-dermatodea_contig11215.781.1|Name=mRNA_S-dermatodea_contig11215.781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3705bp|location=Sequence derived from alignment at S-dermatodea_contig11215:2496..6200+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGATCCGCGTTCTCGGCGGGGGGGTGCGGGTGGAGGTACCATCGAGCCC
CGTGCGGCACCAGGCTCAAGTGACTTTTGCTGAGGTAGGGGCTGGGGAGA
GGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGCTAATCC
GGGCGGCCCGGAGCCCCGGCGGCCAACCCTGCCCGGGCGGGAAGAAAGGG
CGGGGGGNNNNNNNNNNGGGGGGGGGGGGGGGGCGGGGGAGGGGGCGGGC
GCCGGGCGCCGGCGGGGGCGCGGGGGGGTGGGGCGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTAGGGGGG
TGTACTTATGTGGAACGCATGCCGAATCCAGACGGACATAGGCCACGCGT
CCCAACAATGCCGGGACGGAGCGATATGCCGGGTTGTCGCCGGCCGGGTT
GCGTTTGACAAGGGTGATGCATTTACCTGCTGCGAGCGTTAGTCTTTGCG
TTTGCGACGCCAACCGATATGCCATGGGTTGACGTGACAATACCGGGCAA
CCAAGTGTCGCACATTCAGCATGCGTGGCTTTACTCCAAGTACCGCAAAG
GGACTTTGATCACCGTGCGACCGCAAACGTGCCGCACGCACACAATAGTA
TTATACACGACGGTGTATGTGTGATACACTCGGATTATAATCTGCTCATG
AGTACTCCTGGCGGAGTACCACTCATGAGTCGATGGTTGCTCTAGGACGC
TCCAACAATCCAATGGGGGGCGGGGGGCAGGGGGCGGGGGAGTATACAGC
TAAGCGAGGGCAAACGTGTTTTGAAAGTGCCATTTTTGTTGTTATCAGCC
CGAGTCGTTGCCGAAGTTATATCCCAGATCGATATACCCCCTCCCTCACC
CGCCCGTGCCGCGCGGCGCCGCGTAGCACAATTATATCACGTCACATCCC
CGCCCTTTTTGTTGTTTTGTGGTGACAGGTTGGTCCGATCGTTCTCGACC
CCGACGTGGGATCAGAGGTGGACACGCTCTTGGTGGAAGACGTTTCGGTG
TTTAAGGGTCTCGTCAGGAGGGACACGCCGGGGGGGACCGTGAGGGTTCG
CGTGGAAGTCGGACGGGAGCAGGTGAGGCGAAGCTCATTACTGTTCGGCT
TGTCGTAATCGTTATCATTTCGTTTTCGGTTGTTTTTGTTATTTTTCGAA
TCGCAGAAAGACGTGTAACAGACTTCAGAATGGTTAATTTCTCCTGGACT
CTTTGTGCTGTATAGTAGCATCTGGCCACAATTCGGGTCGGGTCGGGTCG
GATTAAGCCGATCGATCGGCTGCTTTACGTGTGCAAACCAACCAAATCAA
CTTAGTTAAGTCAATCAATTTATCAATCAATTAATTAATCAATCAATCAA
TCAACCAATCAAGTAATCAATCAATCAATCAATCAATCAATTAATCAATC
AATCAATCAATCAATCAATCAATTAATCAACCAATCAATCAATCAATCAA
AAAGAGGTACAGAAGGTACACACACACGGAACTTTCCCACCAACAATGGG
GAACCACCCATTCACGCACCCGACGAGATAACTCTAACAACCACGGGCCG
GCCTCAAACGCAGTCCTTTTCGTCGGAGGAAGTTGGCCCAGGCCGACGAG
TTGCCGCTATATGATGGAGGGTGAGATGTTTTATAGCACCACCTCGCAGA
ACAACCGCTTCACGCATGTGTGTCTGTCCTGTAAGCTCAAGCAAGAGACC
TCGGTCGAAAGAGTCGTGTCTTTCCCCCTCAGATTTCGCCGGGGATCACA
GAAAGGTACCCTCCAAAGTTTTTTTTATTCATGGTATTATGGACACGGGG
GTCCAGGCGGACGCCAGAATCCGTGGGACGAAGTCAGTCCCGAGGCGTGG
TTTCTTTCTTTGGTCTTGGTAGCGAGGAGACTAGACTAGACTAGACTAGA
CTCGCTGGGTTTGGTTGGTCTTGTAGTCCGTGGGTGGACCAAGCCTTGGT
GCTCCGTTCTTGATGCTGGTCTGGTTGATCGTTGATGCTCCTTCCTTCCT
TCCGTCGGTAGTGGAAACCCCAAGGATGGATGTGTAGAATGGGGACAGAT
ACGGATCTTGGAAACGTGCTGTCCTCAGTATCTATAATATTGAATACCGC
TAAAAGCACGTATTTTAATAGCGATTTAGAGTTGACTTTTCTGCAGAAAA
TAATAGCGATTCATCATTGAGCGGTGGTATATTAATGAATTGAAGCCAAA
AGTCATGGTGATTTCAGAGGGGGCCCTTATAAACAAGTGTTGAAAAAGAG
TAGGATTTTTTCTACCTCACGGGCGTGTAGCCGTGGCTACCTACTGTTGT
AGTCATAAATCAAAAGTTTATGACCGAGTACGATTTTTTTATATTTTGCA
ACTGTTTCCACCTATATATATAGAGGAACCCTTGACAGGAACCCTTGACT
TGTGATTGGTACTCCGCCAGCCAGGAGTAGAGTACTCATGAGTAGGTTAT
ATATGGTCTTGAGCGTATCACGCATGTCCGAGAGTTAGTTTGTGTCAATT
CCATCTTTGTATGTACTGTAATATATATATTAGGTAATCCGTAGGGTTTT
TTCTCGGTCTCCCGATTTTTCTCATCTGACCACGAGCGGGATCGGCAACC
GTTGGTGTGCCGGTCGGTTGGATGTGTGATAATAATAATAATAATAATAA
TAATAATAATAATCATAATAATAATAATAATAATAATAATAATAATAATA
CCCTGTTGCGTATGTCGTGTACTTGCGTCGCTTCGGCGTTCGCGCGGAGA
TCAAAGCCCTCTTGCGGCACTTAGGAGTACAATCACGCCTATTAATAGTG
AGTGTGCAACATTTGATCATCCGGTGTGTCGAATCAACGCATCACGTATC
CGGCTTGGCGTGGCGAACGCAAGGATGATGACTATTATAGTAATAGCGGC
CTGTTTGGTATCATCCTTGTGAAAAGCAGCCTGGGCGGCGAAAACCCGGC
ATACCGCTCCGTCCCGGCATTGTTGGGCGCACATTCTCTACAGCGTGTCC
GTCTGGATACGACATGCGTTAAACGTAAGTACCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCGTCTACCTCGCTACCCGATGTATTG
CTCGTCGCCCCCCCCCCCCCCAACACCCCCCCTGGTTTAGCCTGACCCTG
AAAGCATGTATAAGACGTATCATCCCCTCTCTCGCCCCTGCCTTATTCCG
AAACATAAACCAGGTAGTAGTTTACATACACTGCTGTGCGCGTTGTCACA
CCTACTGCTACCCATGCTACGCTACAGCCATAATATATACACTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTGGCGCAAACCAAAAGCAAGACCCCT
TCCTCTCCCCTTCCCCCTCCCTCTCCCTCTCCCCCTCCCCCTCCCCCCTC
TCGCCCACGGCCCTGGCTATTATATTATTACATACACGCGTGCGCAAAAC
TTAGATCCGAGTGCTGGTGGAGCCCGACCCACCTGCCGACGCGAACGGAA
CATGGGGCGCAAGTACGACAGGCACCGCATCAGAAAAGGACGGCGAGGCG
GCTACAGATGCGGCAGATACGGGAGAAGGAGTCGTGGACGCCTCGGACGG
CGGCGCGGATGAAGAGGGCAGCGGCAACGGGGGCTGTCCCCCGGGCGGGG
GCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11215:2496..6200+

>mRNA_S-dermatodea_contig11215.781.1 ID=mRNA_S-dermatodea_contig11215.781.1|Name=mRNA_S-dermatodea_contig11215.781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig11215:2496..6200+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGATCCGCGTTCTCGGCGGGGGGGTGCGGGTGGAGGTACCATCGAGCCC
CGTGCGGCACCAGGCTCAAGTGACTTTTGCTGAGAGGATCCGCGTTCTCG
GCGGGGGGGTGCGGGTGGAGGTACCATCGAGCCCCGTGCGGCACCAGGCT
CAAGTGACTTTTGCTGAGGTTGGTCCGATCGTTCTCGACCCCGACGTGGG
ATCAGAGGTGGACACGCTCTTGGTGGAAGACGTTTCGGTGTTTAAGGGTC
TCGTCAGGAGGGACACGCCGGGGGGGACCGTGAGGGTTCGCGTGGAAGTC
GGACGGGAGCAGGTTGGTCCGATCGTTCTCGACCCCGACGTGGGATCAGA
GGTGGACACGCTCTTGGTGGAAGACGTTTCGGTGTTTAAGGGTCTCGTCA
GGAGGGACACGCCGGGGGGGACCGTGAGGGTTCGCGTGGAAGTCGGACGG
GAGCAGATCCGAGTGCTGGTGGAGCCCGACCCACCTGCCGACGCGAACGG
AACATGGGGCGCAAGTACGACAGGCACCGCATCAGAAAAGGACGGCGAGG
CGGCTACAGATGCGGCAGATACGGGAGAAGGAGTCGTGGACGCCTCGGAC
GGCGGCGCGGATGAAGAGGGCAGCGGCAACGGGGGCTGTCCCCCGGGCGG
GGGCGGGATCCGAGTGCTGGTGGAGCCCGACCCACCTGCCGACGCGAACG
GAACATGGGGCGCAAGTACGACAGGCACCGCATCAGAAAAGGACGGCGAG
GCGGCTACAGATGCGGCAGATACGGGAGAAGGAGTCGTGGACGCCTCGGA
CGGCGGCGCGGATGAAGAGGGCAGCGGCAACGGGGGCTGTCCCCCGGGCG
GGGGCGGG
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