mRNA_S-dermatodea_contig11185.762.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11185.762.1
Unique NamemRNA_S-dermatodea_contig11185.762.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11185.762.1 vs. uniprot
Match: D8LD54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD54_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.050e-5
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  139 AVSTRPKRHAEKRFYDDIEDERPQHLSTRGQRKKKDLAP 255
            AVS+RPKR+AEK+ YDD ED+RPQHLS +  +KKK + P
Sbjct:   57 AVSSRPKRNAEKKKYDDSEDDRPQHLSAKRSKKKKGIIP 95
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11185.762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD54_ECTSI2.050e-564.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11185contigS-dermatodea_contig11185:1601..6082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size356
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11185.762.1prot_S-dermatodea_contig11185.762.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11185 1601..6081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924190.5708644-CDS-S-dermatodea_contig11185:1600..16331622924190.5708644-CDS-S-dermatodea_contig11185:1600..1633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 1601..1633 +
1694079080.4394207-CDS-S-dermatodea_contig11185:1600..16331694079080.4394207-CDS-S-dermatodea_contig11185:1600..1633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 1601..1633 +
1622924190.5817246-CDS-S-dermatodea_contig11185:2078..22891622924190.5817246-CDS-S-dermatodea_contig11185:2078..2289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 2079..2289 +
1694079080.447532-CDS-S-dermatodea_contig11185:2078..22891694079080.447532-CDS-S-dermatodea_contig11185:2078..2289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 2079..2289 +
1622924190.5903912-CDS-S-dermatodea_contig11185:5971..60811622924190.5903912-CDS-S-dermatodea_contig11185:5971..6081Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 5972..6081 +
1694079080.456239-CDS-S-dermatodea_contig11185:5971..60811694079080.456239-CDS-S-dermatodea_contig11185:5971..6081Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11185 5972..6081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11185.762.1

>prot_S-dermatodea_contig11185.762.1 ID=prot_S-dermatodea_contig11185.762.1|Name=mRNA_S-dermatodea_contig11185.762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
NTRHRSPTVSEGRDMAPAKKKATKTTPKAERAANAGSTKHQQVAPQAVST
RPKRHAEKRFYDDIEDERPQHLSTRGQRKKKDLAPAPTLSSDEEFVSPMS
NGSGRKVGNMSSGSASGG
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mRNA from alignment at S-dermatodea_contig11185:1601..6082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11185.762.1 ID=mRNA_S-dermatodea_contig11185.762.1|Name=mRNA_S-dermatodea_contig11185.762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4482bp|location=Sequence derived from alignment at S-dermatodea_contig11185:1601..6082+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACACACGCCACCGATCGCCCACGGTCTCTGAGGTGAGCTTTTCCGCGCG
GTACCGCGGCCGTTTATGTCTCAGGATAACGGGCCTCCCGCTCAAGGGGT
ACAAAGGATCCGACCCTGTTTGTTGTGAGGGGCCAGATAGGTCGTCACCT
CCGGTGTGAGCGGTACATGCGACAGGCCGGCGGGGCTCAGCGTCCCGGAT
TCCAGCTACCCGTGTCCCAGTGTGTGGGCTCCGGGCCGCGGGTTCGTTGC
CAGCGGCGTGGCTCGTTTCGGACGGGCGATGATCGTGTGTTGCATCCTGA
ACAAGATAGCGGTGCACCCGACCCCCAAACCGCTGCTTTCTATATACTGC
AGCAAGCTTTAGCACAGCAGGAAGAGCAGCAGCAGCTTGGCTGTTGGTAG
CCCGCATCATCACAATCCCATTCACGCTACCCTGAAAAGTCACCCGCCTC
TGCTGTTCCCGCGTGGGTGTCCGTGCAGGGGAGAGATATGGCGCCCGCGA
AGAAGAAGGCGACGAAGACAACGCCGAAGGCGGAGCGCGCGGCAAACGCG
GGGTCTACCAAGCACCAGCAGGTAGCCCCGCAAGCAGTGTCTACCAGGCC
CAAGCGGCACGCTGAGAAGCGCTTCTACGATGACATCGAGGACGAACGAC
CGCAGCACCTGAGCACGAGAGGACAGAGAAAAAAGAAAGGTGGGCTGTAC
CACAGGACCCCACCCACGCTGCTGTATTCAACCGATGCGGCTGCTGCTTG
CTGGTGCCGCGATGGTCGTTTCGAGACCCGAGTTTGCTGTTGGTGTTGTT
CAGAGGCGGCTACATATTTTTTGCGCGCAGGCTATTATAGGCTCCACACT
ATAGTACAGTATTTTATAGTATATCCCTTGTTTAGCATTCCGCAGTGTCA
TTGCGCCGCTTCTAGGGATCACCCGTCTGCTTGCACGCACTCGCCCGGCG
GAATCGCCGCGCACCCCCCAGCCCCCGCCTGTGTATCGTCGCCGCGTTTC
CTGGCACATCGAGGCTCTCGAAGCTTGCCCTTTCTGTCTCCCTGTCGAAG
AAGTGCCGATGTCTTCGCAGGAAAGTCGTCCGGGCCAAAGCGTTGCGATT
TGCCCATCATCTATCCCTGATGTGTCGCTCCGCGAGGATCAGGGCTAATG
TGCACACACGACCATGAATTGCAGCCATGGGCAGCGATGGGTAGTCTCGA
GGCTGAGGCTGGTTTTATACTGGCTGTATCATTAACATACTAACAGTACA
CTCGTTGTAAAGGAGTAGTACTTGTACTCCCGCTTGTTTCGTGCTTGTGT
ATGATCCCATATCGTCCATCGTATACTACTCTGTAATTCGCAACAGGCAA
TCCGAAAGCTGCAGCTAATACTGTCCTACTTCTGGAGAGCTCTATGTCTA
TGTGCAGCTCTACACAAGCATGTACAGAGTATGTACAGCAGTAGGTGGGC
ACAGTATACCGTACAGGATACGTTTGAGTATAATATCATAGACCAACCAG
AGGCATGTCCCTACAGAGTTCCATGACATTTAAAGCTCTCTACAGCAGTG
TCTATCTATAACGTAGCCGCTCCGTGTTACAATGTGCTGTAGTTAGCCTG
TGAGGCTACATTTTTTTGTTGCGTTGCGCGTGGGCCTGCATTCCTGTGTA
CACACTCTAGCCCTCGCCTAAAAAACGGCCAAGTTTTGCCCACACAAACA
GTATGGATGTACTTGCATGTACAGTATTTTGGAGCTATCCTTGTACATAT
ATAAATATGCATATTTATTTGTAGACTATTATATACCAAGTATATCATAC
CGAGCAGATGCCAGTTCCAAGCCTGCCTCCTCCCTCTGATGCTATCATAC
AGTACTATCTTGCAGTGACGCCCTGCCACCTGTGCATCAAGGTGGCGTGG
ATGGACTAATTATCGCAACCGGTTGAGCGGTGCAGTGATCTACTGCCCTT
CCGAGACTAAGGTTGATTGAGTTCGTCTGCGCGGCGATCTTCGACGGCTT
CCTGACAAGTTTTTTTCTCACGTTTCGAATTATTATGATATGCAGTACAC
TAAAATAAAAGCGGGAGTGCTTCGTTCGCGCATTTTTTCCGCAACGATCT
ACAATAGTAACAGTCATACACAAGACAGAGACAGAGAGCATCCATCTTCG
TTCGCGCGTTCTCCGCAACGATCTACAATATAGTATACAGCAGTACAGTA
GTATGATATGACCAGATACTGCTGTAGAGCATCTACCGTAGTTTTTTTGT
TTTTTGTGTTTTAACCCTTTTGAAACTGAGCTGTGTGTTCGGTGTTATTG
TAGGTCATCCCGCCCACACCATTTTTCACCTATTAATAGCACCGGCCGTG
ACTGAACGGTGGCTAATCCTCGCCGTACTTTTACAAGTATGAGATACAGC
GGCGGTGGAAAAACTACTCTTCTTATGACAGTATCGCGCTTATTAATAGC
TTGCGTGCACCCACCACCGCGGTGTATAGCATACCCCTAGTATAGTATAG
TATACATACCATTATGAGGCACACAGCAGTGTAGTAGTCATAACTCTACT
TCTACAATACACCATACCGTCCCTGGTACGTACTACAAGTATAGGTAATA
TTAGAATAAGTATGAAGTTGCATACCCGTAGGTATACATACCGATATCGA
GGCACACAGTGTAGTAGTCATAACCCTACTTCCACAGTACACGATACCGT
CCATGGTACGTACTATAGGTACAAGATTAGAATAGGCATGTACTGTAGTA
CCAGTATGATAATGCCCAACCTAGTAAACCATAAATCAATCTGGTCTCGC
CTTATCATACTGTATACAATATAATATCATACAAGATGTGCATTCAATCG
ACATTCCGGCCTGAAATGTCGAACGTAGAAAAAACAGAAAAAAAAATCAA
GGTGTCTGGCCAACGTTTCGTTTAAAAAAACATGACTTGGCTGTATAACA
CGTTAACGTTATGTTCAGCAGAAAGTTGGTCCTGATTATTATTATATTGA
TTACTGTACACGTCCGGACTACGAAGTGTTGCAGCGTACGAATCCCTTTT
CCGACGCACTATTATATTACTTCGAAGTTTATTAATAAGAGGGAGGAGTA
CAATAGCCACCGTTAAGGTACTGTACCCGTTCGATGTCAAATTCGATCCA
GAGCAATCCAAAGATGGGGGGTACTCATGTTTTGCATGCCTTAGCTGTTC
GACCATTGGCCGCGCGTCCTCGAGAGAACGGAGGATTGGTCCATCAAGAT
CGATCGCCGATGGCCAATCGTTCCTTCCTACTCTGCCAAAGGTGGCGTAG
ACAGGTTTTTACTATCCTGTCTACATCACTTCTCGCCTTCTCAGGCCACT
TATTATCCCCCAGTAGCAGCATAGCTACCGCCTTCGTCTGGCTGTCCCAT
GCTTCAAAAATCTCTCTGTCACAGCCTTCATTTTTTGCCAGCCCAGCCAT
TTACGCTTCTCTCTCATTTTTGTTAACCGCATGTCGTATCCATACGGACA
TAGACCACGCGTACTCAACAATGCCGGAACGTAGCGATATGCCGGGTTTT
CGCCGGCCAGGCTGTGTTTCACAAGGATAATACCAGCTGTTTGTCATCAT
CCTTGCGCTTGCGACGCCAAACGATACTGAAGTATGCCATGGGCTGATAA
GACACACCGGACAACCAAATGTTGCATATTCAGTGGGCGTGACTACACTC
CATAGATAGGGGGGGGAGGGAGTTGTCGGCTATATTGTTGCAAGTGTCGG
AACGGGATCTGAGATGGGCGCTGGCCAATCAGGCGCGAGCGCAGCGAAAT
GGAAACACGCCTTTCAAGTCCTGCGCGACAGACAAACACCGGTTTTCTTA
CCCCCCGGGAACGTAGACGGAGATTCAGGAAGGTAGAATAGGCGAGGAAG
ACGAGGACAAGTTCAAATGTGATTGCGGCTCGGAGGAGTGTGAAGACCGC
GTCCATGTAGTGGCGGAACGCCCGGTTTATGAAATGGAAAGAGAAGTGTA
CATGGCTGAGCTGGGAAAAAATTGAAGGTTGTGACAAAGAGACTTTGGAA
GCATGGGACAGCCAAACGAAGGTGGTAGCGGTAGTTATACTGGGGGATAC
GAAGTGGCCTGAGCAGGCGAGAAGTGATGCAGGCAGGACTGGAGGGAAAC
CATTTTTGCGCCACCTTTGGCACAGCAGGAAGGAACGATTGGCCGTCGGC
GATACATCGATGCTGTGGGAACGATGCTCCGTCCTCTCGAGGACGCGTGG
TTAATAGTCTAACAACGAAGGCATGCAAAACACGAGTACCCCCCCCCCCC
GCCCTCAATCCTGACTTTAATAACCCTAACCCTAACCCTAACCCTAACCC
TATCGACCCTCGTTTCCCCAGATCTGGCGCCCGCTCCAACCCTCAGCAGC
GACGAAGAATTCGTGTCGCCCATGTCCAACGGGAGCGGTCGAAAGGTTGG
AAACATGAGCAGCGGCAGCGCCAGTGGCGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11185:1601..6082+

>mRNA_S-dermatodea_contig11185.762.1 ID=mRNA_S-dermatodea_contig11185.762.1|Name=mRNA_S-dermatodea_contig11185.762.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig11185:1601..6082+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACACACGCCACCGATCGCCCACGGTCTCTGAGAACACACGCCACCGATC
GCCCACGGTCTCTGAGGGGAGAGATATGGCGCCCGCGAAGAAGAAGGCGA
CGAAGACAACGCCGAAGGCGGAGCGCGCGGCAAACGCGGGGTCTACCAAG
CACCAGCAGGTAGCCCCGCAAGCAGTGTCTACCAGGCCCAAGCGGCACGC
TGAGAAGCGCTTCTACGATGACATCGAGGACGAACGACCGCAGCACCTGA
GCACGAGAGGACAGAGAAAAAAGAAAGGGGAGAGATATGGCGCCCGCGAA
GAAGAAGGCGACGAAGACAACGCCGAAGGCGGAGCGCGCGGCAAACGCGG
GGTCTACCAAGCACCAGCAGGTAGCCCCGCAAGCAGTGTCTACCAGGCCC
AAGCGGCACGCTGAGAAGCGCTTCTACGATGACATCGAGGACGAACGACC
GCAGCACCTGAGCACGAGAGGACAGAGAAAAAAGAAAGATCTGGCGCCCG
CTCCAACCCTCAGCAGCGACGAAGAATTCGTGTCGCCCATGTCCAACGGG
AGCGGTCGAAAGGTTGGAAACATGAGCAGCGGCAGCGCCAGTGGCGGAAT
CTGGCGCCCGCTCCAACCCTCAGCAGCGACGAAGAATTCGTGTCGCCCAT
GTCCAACGGGAGCGGTCGAAAGGTTGGAAACATGAGCAGCGGCAGCGCCA
GTGGCGGA
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