mRNA_S-dermatodea_contig11029.683.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11029.683.1
Unique NamemRNA_S-dermatodea_contig11029.683.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11029.683.1 vs. uniprot
Match: D8LRG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRG0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.350e-19
Identity = 56/93 (60.22%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  127 MVKSAIKMAALGALAAAAPSTATG----GLDLLQTVQKGARSSTVPRVSKQDIWLEDRSAGRLQNTRG-HLTPPPAFDPWQGFYAAEVAAFSC 390
            M KSAIK      LA AAPS A      GLDLL  V  G ++    RV+KQDIWLE+RSAGRLQNTR  HL P   FD WQG+Y+AEVAAFSC
Sbjct:    1 MTKSAIKCITAATLAFAAPSAAASRNGSGLDLLHNV--GGKNQ---RVAKQDIWLEERSAGRLQNTRQEHLAPSIFFDQWQGYYSAEVAAFSC 88
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11029.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRG0_ECTSI1.350e-1960.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11029contigS-dermatodea_contig11029:1128..4330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004390.1
Exons2
Model size1267
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11029.683.1prot_S-dermatodea_contig11029.683.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11029 2002..4204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.7001884-UTR-S-dermatodea_contig11029:1127..20011622924184.7001884-UTR-S-dermatodea_contig11029:1127..2001Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 1128..2001 -
1694079076.23493-UTR-S-dermatodea_contig11029:1127..20011694079076.23493-UTR-S-dermatodea_contig11029:1127..2001Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 1128..2001 -
1622924184.7297187-UTR-S-dermatodea_contig11029:4204..43301622924184.7297187-UTR-S-dermatodea_contig11029:4204..4330Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 4205..4330 -
1694079076.266684-UTR-S-dermatodea_contig11029:4204..43301694079076.266684-UTR-S-dermatodea_contig11029:4204..4330Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11029 4205..4330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924184.7119286-CDS-S-dermatodea_contig11029:2001..21381622924184.7119286-CDS-S-dermatodea_contig11029:2001..2138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11029 2002..2138 -
1694079076.2430556-CDS-S-dermatodea_contig11029:2001..21381694079076.2430556-CDS-S-dermatodea_contig11029:2001..2138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11029 2002..2138 -
1622924184.7206483-CDS-S-dermatodea_contig11029:4074..42041622924184.7206483-CDS-S-dermatodea_contig11029:4074..4204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11029 4075..4204 -
1694079076.2534573-CDS-S-dermatodea_contig11029:4074..42041694079076.2534573-CDS-S-dermatodea_contig11029:4074..4204Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11029 4075..4204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11029.683.1

>prot_S-dermatodea_contig11029.683.1 ID=prot_S-dermatodea_contig11029.683.1|Name=mRNA_S-dermatodea_contig11029.683.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MVKSAIKMAALGALAAAAPSTATGGLDLLQTVQKGARSSTVPRVSKQDIW
LEDRSAGRLQNTRGHLTPPPAFDPWQGFYAAEVAAFSC*
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mRNA from alignment at S-dermatodea_contig11029:1128..4330-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11029.683.1 ID=mRNA_S-dermatodea_contig11029.683.1|Name=mRNA_S-dermatodea_contig11029.683.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3203bp|location=Sequence derived from alignment at S-dermatodea_contig11029:1128..4330- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTCTTTTGCCATCTGTCTTCTGCACCAGCCGGCACTCCACACTTCAAT
CCGAGACATCGATCATCTCAGTCAGCAAGTACCACCTACACCAATCTAAA
AGAGAGAGAGAAGAAGCAAAGGAAGCATGGTGAAGAGCGCGATCAAGATG
GCAGCCCTGGGAGCCCTCGCCGCGGCCGCTCCCTCGACCGCAACCGGCGG
GCTCGACCTCCTCCAGACCGTGCAAAAGGGGGCGCGCTCAAGCACTGTGC
CGAGAGGTGATTGGAAATGCATTGCATAGCACTCTGTCCATATAGATGGC
CCCCTATAATCCTAAGAGCATGGGCCTGGAAGAGTTCACGGGGTGCGCGG
CTCGTGTAGCATCTTGCTCGACCACATTCACCTCGATAGATTCGCTGCGA
GAAAACACAGGGAGCGGAGTGTGGTAGCGCACGCTCCTTCCTCTGTGGGG
GTCCTTCGTTTTTTTTTTCGTACGCTCGGGTTGTTGCCTTGTTTTGCCAT
CAACCAACGTCCAATTCTCGAAATTATGCCCTCAAGGAGAGCTTCTTTGC
ATCCAGTATAATATGACAATACACAACGCTCACAAGACAGTATCATCGTC
AAGTCGTGTGTAAACCCCGCTCGATATTCCGCACATATGGGACATGAGCG
CCTCAAGCGGATAATGAGATGCCCCCCCCTGTAGATCGCAAGTTTATTGT
TCGCGCTGAAACGCAGATAGATGTGGTTGTAATGTACTGTATCGCGTTCC
GCATTATGTGTAACGAACGAACTTTCCCCCGAAATTCTTGTATGCTGTGC
GGATCTGAGATTCGGCACAATCGGGTGAAAGACTCGTCATTTGCGGCATG
CATGATGCATGCTTGAGCTCTGCTTGTTGCACCTGAGAAGAGCAATCACG
ACAAATGATGGGCATCGTCTCTTACCGCTGGTTTCACGGACTGCCCGTCT
CACGTATTGCCGTGCACCCAATCATTCGTACAGCGCGAAAAATTCGAGCG
TCGCGAAGCCAACAACACAAGATTGGTCGTAATGAATCATCGATTTATTT
TCCTTGTACTGTCTGTACAGGTAATTAAAATGCGCACGATCCGCGATTTT
ACCCACCAAATCCCGACAAGTACGACAAGTATTTTTTGTTTTTTTGTCTC
ATGTTCGTTTGTTCCGCAACCAACGAAAGACGAAATTCCTGGAACTTGGC
TTTTTCATATGATTTAGATAGAATTTATGAGATACTCGTACGTTGTCGTT
TTCGCACAGATTCCTAGCTTACATGGGCTAGCTAGGGGTGCCTACGATAT
ATACATGACAAGCGCAAAAACGAACAGCTCACCGAATAACGCGGTGGGAC
TGCGAAGCGATTCAACAGCGCGGCATCCACAGATGTCAGATGTACATGGC
TCAATCATAACAGGGGAGGCGTCAGAGAGTCCCGCTGGCGCCCAATTTCC
CCCCCTGACTCTTCCCTGAAGCCCTGTAATAGCTGTCGTCCAGGGAGGCT
CTTCTCGCAGTTTCTGCCTCTCACCTGCTGCCTCGTTGAAGCTACAGCAT
ACAAAAAAAAACTACCTCATTCCAAAGAGCTCCGACAGCAGCTTGGGCAC
CACGACCCCACCCGCCACGGCTCAGGCTGCTGCGGCAAATTGAGCTCGGT
TGCTCGGCCCCCATTACAACCGCAATAATTTTTAATTTTTATGACAACAG
CAGTCAAATAAAATACTTGTAAAATATACACTCAACCGCGTTGAATATTC
GCTGTTTGATTGTTTTGCCGCCGATTTTTTTCGTTTTCAACATTTTTTAT
ATCGGACGCAGACGGGCGAAATCTGAAAATTTGCCAGGTTCCAGGAATTT
CATTTTCTCGTTTTTCTGTTCAAGAGTTAAGGCGCGACATCACACAGCAG
TAAGTCAGTTTCGAAGCACGGCATTTGCAAATTCCAAGCCCACGAAGGCT
GCTAAAGGTCAAACAAGGAACATCAACACATGAGGAACATCAACATATAT
ATGACCAAGTGAAGCACCCGCTCCACGCCATGTATCATGCATACTGATGA
CTTACGATCGCGACTGCGTTATATCTGATAATTCTAATGGGCACGATTTC
TCCCCAAATCCTCCATTGTCCTCAATCTTGCTTTTTTTCACTTTCCCTTG
TTGTTCTGCTGCAACTGCAACTACAACACTCATGACAAGTAGTTTCGAAG
CAAGACATCTGGCTTGAGGATCGGTCAGCCGGGCGACTCCAGAACACACG
GGGGCACTTGACGCCGCCGCCGGCCTTCGACCCGTGGCAAGGCTTCTACG
CGGCGGAAGTCGCGGCGTTTTCTTGCTGATGCGGACAACCTGGCATCCAA
GATCCTGATCCCGCAAGCGTGATGTTCGTTTAGTGCATAAAAAAAAACAG
AAAAATAACGTGACTCGCATTACAAATCGAAATGAATTGCGGTTCGTTTT
CTTGCGTCTCCCGAGGAGGTCTCAAGGTTGGACTGGTTTTAGGTTTTTCT
CGGTCCTGTTTGCGAGGAGGGTATTTGTATGATGCGATATACGATATTAT
TATTAGCGGTTGAAAAGGTCGCGTGTGATTTTGTATATTGTATTTTTCGG
CGCGTGGGAGGTGGGAAGGGAGGGTGTGCAGTTGTCGCGTTTGGCGGAAA
GGAAAACAGCGGTGACTGATGAGGTTAACATGGCCGCAGCAATGAAAACT
GCTTCGTTCGAGCGTCTTCGTGATGGGGTCTGTCTGGTCCCGTGTTGTGT
GTCTCGCGTATCCCTTGCGTATTGAGGAACGTGAATCGGATTGATGTGTT
TGTCCAAGGGTGTTCGTCGTTGGGATGAATGTGAGCGAACAAAAGAAAAG
TATCGCATGAATCAAGCCCCCGCAGGGCGAGGGGAAAGGTGACAAGCTGG
CGTTGCGTATGTATTGTGTAGCGTCATGGGTGTTCTAGGCGCAAGGACCA
ATTCAAGTATATTTCGTCGTTGCGCCCAGGGTCATCCATGTCCCGGCTTC
GATAGCCTGAGCGCACGAAACATACAGCATTTCGAGGAGAATGCGCTTTG
GAGCACGGGTGTGAATGCATTACAGAGTATAGTAGTACCGTTTATCATGT
AGGGTGTCGATGCAGATGGCTGAAAGAGCTCGTGTTGCCATATATATACA
TACATTACATAATATCATAGTATGTAGCAAGGTGGCCGCGTCTGGCCGAG
CAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11029:1128..4330-

>mRNA_S-dermatodea_contig11029.683.1 ID=mRNA_S-dermatodea_contig11029.683.1|Name=mRNA_S-dermatodea_contig11029.683.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig11029:1128..4330- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGAAGAGCGCGATCAAGATGGCAGCCCTGGGAGCCCTCGCCGCGGC
CGCTCCCTCGACCGCAACCGGCGGGCTCGACCTCCTCCAGACCGTGCAAA
AGGGGGCGCGCTCAAGCACTGTGCCGAGAGATGGTGAAGAGCGCGATCAA
GATGGCAGCCCTGGGAGCCCTCGCCGCGGCCGCTCCCTCGACCGCAACCG
GCGGGCTCGACCTCCTCCAGACCGTGCAAAAGGGGGCGCGCTCAAGCACT
GTGCCGAGAGTTTCGAAGCAAGACATCTGGCTTGAGGATCGGTCAGCCGG
GCGACTCCAGAACACACGGGGGCACTTGACGCCGCCGCCGGCCTTCGACC
CGTGGCAAGGCTTCTACGCGGCGGAAGTCGCGGCGTTTTCTTGCTGATTT
CGAAGCAAGACATCTGGCTTGAGGATCGGTCAGCCGGGCGACTCCAGAAC
ACACGGGGGCACTTGACGCCGCCGCCGGCCTTCGACCCGTGGCAAGGCTT
CTACGCGGCGGAAGTCGCGGCGTTTTCTTGCTGA
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