mRNA_S-dermatodea_contig1100.661.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1100.661.1
Unique NamemRNA_S-dermatodea_contig1100.661.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: D7FVJ7_ECTSI (PFtsY, plastid signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ7_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 9.720e-55
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = 1
Query:    4 TAAITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            TAAITFADP++G PSVLFFMGANGMGKTTTVGKVASRLRE+GGQKVLLAAADTFRAAAVEQL EWA+RSGADIV PLD DERPPSVV+RAAEKAV+EGYDVLIVDTSG
Sbjct:  236 TAAITFADPSLGVPSVLFFMGANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRAAAVEQLNEWAERSGADIVVPLDKDERPPSVVARAAEKAVSEGYDVLIVDTSG 343          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A6H5KTL2_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL2_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 7.510e-53
Identity = 98/119 (82.35%), Postives = 104/119 (87.39%), Query Frame = 1
Query:    4 TAAITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFR-----------AAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            TAAITFADP++G PSVLFFMGANGMGKTTTVGKVASRLRE+GGQKVLLAAADTFR           AAAVEQL EWA+RSGADIV PLD DERPPSVV+RAAEKAV+EGYDVLIVDTSG
Sbjct:  139 TAAITFADPSLGVPSVLFFMGANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRIEVIXXXXXXXAAAVEQLNEWAERSGADIVVPLDKDERPPSVVARAAEKAVSEGYDVLIVDTSG 257          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A835ZC86_9STRA (PFtsY, plastid signal recognition particle receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC86_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.410e-34
Identity = 72/106 (67.92%), Postives = 84/106 (79.25%), Query Frame = 1
Query:   10 AITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            AI FA    G PSVLF MGANGMGKTTT+GK+A+RL+ +   KVLL AADTFRAAAVEQL EW++R+  DIV PLDS+ERP SV  RA E+AV  GYDV++VDTSG
Sbjct:  151 AIKFAPADSGVPSVLFVMGANGMGKTTTIGKIAARLKGQ-DLKVLLCAADTFRAAAVEQLEEWSNRAEVDIVKPLDSEERPESVAQRACERAVEGGYDVVVVDTSG 255          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S0G1Y3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1Y3_9RHOD)

HSP 1 Score: 117 bits (294), Expect = 7.670e-30
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            P+V+ F+GANGMGKTTTVGK+A+R R+E G++VLLAA DTFRAAAVEQL  WADR+  DIV PL+  + P S   RA +K   EGYDV+I+DTSG
Sbjct:  159 PTVVVFVGANGMGKTTTVGKLATRYRKE-GKRVLLAACDTFRAAAVEQLATWADRADVDIVKPLEGAKNPSSTAFRAVKKGQEEGYDVVIIDTSG 252          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S2EN25_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EN25_TRICV)

HSP 1 Score: 119 bits (299), Expect = 9.700e-30
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   13 ITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            + FA+   G P+VLF MGANGMGKTTT+GK+ASRLR EGGQKVL+AA DTFRA AVEQL  WADR+  +  +P +  + P +V+  + + A+  GYD LIVDTSG
Sbjct:  170 VKFAEEGEGCPTVLFVMGANGMGKTTTIGKLASRLRNEGGQKVLVAACDTFRAGAVEQLEMWADRAEVECYSPSEEKKTPAAVLYGSLDAAIAGGYDTLIVDTSG 274          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S2ZSH4_9RHOD (Hypothetical protein n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZSH4_9RHOD)

HSP 1 Score: 117 bits (293), Expect = 4.480e-29
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            P+V+ F+GANGMGKTTTVGK+ +R ++E G+KVLLAA DTFRAAAVEQL  WADR+  DIV PL+  + P S   RA +KA  EGYDV+I+DTSG
Sbjct:  208 PTVVVFVGANGMGKTTTVGKLGTRYKKE-GKKVLLAACDTFRAAAVEQLATWADRAEVDIVKPLEGAKNPSSTAFRAVKKAQEEGYDVVIIDTSG 301          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S2BL25_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BL25_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.450e-29
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1
Query:   10 AITFADP---AVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            AI FA P   A G P+VLF +GANGMGKTTT+GK+A RLR E GQKVLLAA DTFRAAAVEQL  W++R+  D   P    ++P  V+  A +KA+   YDVLIVDTSG
Sbjct:  248 AIAFASPEERANGMPTVLFVIGANGMGKTTTIGKLAHRLRNESGQKVLLAACDTFRAAAVEQLEMWSERAEVDFTGPRSDKDKPAFVLGAAIDKAIEGKYDVLIVDTSG 356          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S4JMD3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JMD3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.110e-28
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            P+VLF MGANGMGKTTT+GK+ASRLR EGGQKVL+AA DTFRA AVEQL  WADR+  D  +P +S + P +V+  + + A++ GYD +IVDTSG
Sbjct:  231 PTVLFVMGANGMGKTTTIGKLASRLRNEGGQKVLVAACDTFRAGAVEQLEMWADRAEVDCFSPNESQKSPAAVLYGSLDLALSGGYDTVIVDTSG 325          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A1Z5K4J0_FISSO (Fused signal recognition particle receptor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4J0_FISSO)

HSP 1 Score: 115 bits (289), Expect = 3.290e-28
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 1
Query:   43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            P+VLF +GANGMGKTTT+GK+A RLR EG Q VL+AA DTFRA AV QL +WADR+  D+V P D+ + P +V+  A +KAV E YD L+VDTSG
Sbjct:  181 PTVLFILGANGMGKTTTIGKLAHRLRTEGNQTVLVAACDTFRAGAVAQLQQWADRAQVDLVGPTDTVKSPAAVLYSALDKAVLEKYDTLLVDTSG 275          
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: B7G5P8_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5P8_PHATC)

HSP 1 Score: 112 bits (279), Expect = 8.310e-28
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 1
Query:   43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
            P+VLF MGANGMGKTTT+GK+A RLR EG Q VLLAA DTFRA AVEQL +WA+R+  D+V P      P +V+  A +K + E YD ++VDTSG
Sbjct:   95 PTVLFVMGANGMGKTTTIGKLAHRLRNEGNQTVLLAACDTFRAGAVEQLQQWAERAQVDMVGPSTKVTTPSAVLYAALDKGIAEKYDTILVDTSG 189          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ7_ECTSI9.720e-5590.74PFtsY, plastid signal recognition particle recepto... [more]
A0A6H5KTL2_9PHAE7.510e-5382.35SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZC86_9STRA2.410e-3467.92PFtsY, plastid signal recognition particle recepto... [more]
A0A7S0G1Y3_9RHOD7.670e-3064.21Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S2EN25_TRICV9.700e-3059.05Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2ZSH4_9RHOD4.480e-2964.21Hypothetical protein n=5 Tax=Rhodosorus marinus Ta... [more]
A0A7S2BL25_9STRA5.450e-2960.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4JMD3_9STRA1.110e-2863.16Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A1Z5K4J0_FISSO3.290e-2862.11Fused signal recognition particle receptor n=2 Tax... [more]
B7G5P8_PHATC8.310e-2860.00Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1100contigS-dermatodea_contig1100:1090..2150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue2.9e-46
Seed eggNOG ortholog2880.D7FVJ7
KEGG koko:K03110
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPFtsY, plastid signal recognition particle receptor
Ec32 orthologEc-15_003560.1
Exons2
Model size332
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924183.3073657-CDS-S-dermatodea_contig1100:1089..12521622924183.3073657-CDS-S-dermatodea_contig1100:1089..1252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 1090..1252 -
1694079075.3352396-CDS-S-dermatodea_contig1100:1089..12521694079075.3352396-CDS-S-dermatodea_contig1100:1089..1252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 1090..1252 -
1622924183.3181455-CDS-S-dermatodea_contig1100:1983..21501622924183.3181455-CDS-S-dermatodea_contig1100:1983..2150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 1984..2150 -
1694079075.3497682-CDS-S-dermatodea_contig1100:1983..21501694079075.3497682-CDS-S-dermatodea_contig1100:1983..2150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 1984..2150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1100.661.1prot_S-dermatodea_contig1100.661.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1100 1090..2150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1100.661.1

>prot_S-dermatodea_contig1100.661.1 ID=prot_S-dermatodea_contig1100.661.1|Name=mRNA_S-dermatodea_contig1100.661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
STAAITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLA
AADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGY
DVLIVDTSG*
back to top

mRNA from alignment at S-dermatodea_contig1100:1090..2150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1100.661.1 ID=mRNA_S-dermatodea_contig1100.661.1|Name=mRNA_S-dermatodea_contig1100.661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1061bp|location=Sequence derived from alignment at S-dermatodea_contig1100:1090..2150- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCACGGCCGCCATCACATTCGCCGATCCCGCAGTAGGCGGGCCATCGGT GCTGTTTTTTATGGGGGCTAACGGGATGGGCAAAACCACAACTGTCGGAA AGGTCGCGTCGCGGCTTAGGGAAGAGGGGGGGCAGAAAGTTCTCCTGGCG GCGGCGGATACGTTCAGGTGCGAGTTTTGGTTGATCAGTTCCGGCTAGAA AGGGGATGTGATCGCTATGGCCGCGTCGTCTAGCTTAGGGGGGGGGTAAC TGTGATGCACCCTGCGCACGCGCGTCACCCGCGAAACTTGCCATGGGTGG CATCGGGTTTGGGTGTGTGATTGCGATTGGGAGTTTTGGTGCGTCCGCCT GTGGGGTTCGTTGGTAAGGTGTACATATTTTTTTCAATCGTGGTTGGTTT TGGTTCGTTGACTTTGTTTTTCTAATGCTGTACAGCTGTAGTGATCTTCT CATTGTTTTGCCTGGCCGGGGCCGTCCGCTGGATGGACCCGGCGTGCTGT TAACTTTTAACGGTAAAGCCATCGTTTCATGTTTGTTTTTGTTTTTGTTT TCTTTTATGTTTTGAGCATGTGTGTGTGTGTGTGTGTTCGCTGGTGGGTG TGTACTTGGCAGTGCGCGACATGGCGGCATGGCATGGCATGGCATGGCAT GCATCCAGTGCATGCATGACCTTTCTGCGTCAAGTCGTTTTTGTTTTGAA GTCGTGGCACGCACAGCATGCATGCAGGGCCCGCACTGCATGCACATGTA TGCAGCCGTTGGGTTTTGCAGCGAAAGCGACAAAAACCATCGGCAGCCTC GTCGTCACCATTATCTCCCCCACATCTGCACCTGAGCTGCTGCGTGTTTC CCTCATGTGACCCACCATTTCCGGACCGGTTTTCGGATCGTTCCGCAGGG CGGCGGCCGTGGAGCAGCTGATGGAGTGGGCGGACAGATCCGGCGCCGAC ATCGTAACGCCTCTAGACTCGGACGAACGCCCGCCCTCCGTGGTCTCCAG AGCGGCGGAGAAGGCGGTAAATGAGGGGTACGATGTGCTCATCGTCGACA CTAGCGGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1100:1090..2150-

>mRNA_S-dermatodea_contig1100.661.1 ID=mRNA_S-dermatodea_contig1100.661.1|Name=mRNA_S-dermatodea_contig1100.661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig1100:1090..2150- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCACGGCCGCCATCACATTCGCCGATCCCGCAGTAGGCGGGCCATCGGT
GCTGTTTTTTATGGGGGCTAACGGGATGGGCAAAACCACAACTGTCGGAA
AGGTCGCGTCGCGGCTTAGGGAAGAGGGGGGGCAGAAAGTTCTCCTGGCG
GCGGCGGATACGTTCAGTCCACGGCCGCCATCACATTCGCCGATCCCGCA
GTAGGCGGGCCATCGGTGCTGTTTTTTATGGGGGCTAACGGGATGGGCAA
AACCACAACTGTCGGAAAGGTCGCGTCGCGGCTTAGGGAAGAGGGGGGGC
AGAAAGTTCTCCTGGCGGCGGCGGATACGTTCAGGGCGGCGGCCGTGGAG
CAGCTGATGGAGTGGGCGGACAGATCCGGCGCCGACATCGTAACGCCTCT
AGACTCGGACGAACGCCCGCCCTCCGTGGTCTCCAGAGCGGCGGAGAAGG
CGGTAAATGAGGGGTACGATGTGCTCATCGTCGACACTAGCGGGTGAGGC
GGCGGCCGTGGAGCAGCTGATGGAGTGGGCGGACAGATCCGGCGCCGACA
TCGTAACGCCTCTAGACTCGGACGAACGCCCGCCCTCCGTGGTCTCCAGA
GCGGCGGAGAAGGCGGTAAATGAGGGGTACGATGTGCTCATCGTCGACAC
TAGCGGGTGA
back to top