mRNA_S-dermatodea_contig1100.661.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: D7FVJ7_ECTSI (PFtsY, plastid signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ7_ECTSI) HSP 1 Score: 187 bits (474), Expect = 9.720e-55 Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = 1
Query: 4 TAAITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
TAAITFADP++G PSVLFFMGANGMGKTTTVGKVASRLRE+GGQKVLLAAADTFRAAAVEQL EWA+RSGADIV PLD DERPPSVV+RAAEKAV+EGYDVLIVDTSG
Sbjct: 236 TAAITFADPSLGVPSVLFFMGANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRAAAVEQLNEWAERSGADIVVPLDKDERPPSVVARAAEKAVSEGYDVLIVDTSG 343
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A6H5KTL2_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL2_9PHAE) HSP 1 Score: 178 bits (452), Expect = 7.510e-53 Identity = 98/119 (82.35%), Postives = 104/119 (87.39%), Query Frame = 1
Query: 4 TAAITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFR-----------AAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
TAAITFADP++G PSVLFFMGANGMGKTTTVGKVASRLRE+GGQKVLLAAADTFR AAAVEQL EWA+RSGADIV PLD DERPPSVV+RAAEKAV+EGYDVLIVDTSG
Sbjct: 139 TAAITFADPSLGVPSVLFFMGANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRIEVIXXXXXXXAAAVEQLNEWAERSGADIVVPLDKDERPPSVVARAAEKAVSEGYDVLIVDTSG 257
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A835ZC86_9STRA (PFtsY, plastid signal recognition particle receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC86_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.410e-34 Identity = 72/106 (67.92%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 10 AITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
AI FA G PSVLF MGANGMGKTTT+GK+A+RL+ + KVLL AADTFRAAAVEQL EW++R+ DIV PLDS+ERP SV RA E+AV GYDV++VDTSG
Sbjct: 151 AIKFAPADSGVPSVLFVMGANGMGKTTTIGKIAARLKGQ-DLKVLLCAADTFRAAAVEQLEEWSNRAEVDIVKPLDSEERPESVAQRACERAVEGGYDVVVVDTSG 255
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S0G1Y3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1Y3_9RHOD) HSP 1 Score: 117 bits (294), Expect = 7.670e-30 Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1
Query: 43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
P+V+ F+GANGMGKTTTVGK+A+R R+E G++VLLAA DTFRAAAVEQL WADR+ DIV PL+ + P S RA +K EGYDV+I+DTSG
Sbjct: 159 PTVVVFVGANGMGKTTTVGKLATRYRKE-GKRVLLAACDTFRAAAVEQLATWADRADVDIVKPLEGAKNPSSTAFRAVKKGQEEGYDVVIIDTSG 252
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S2EN25_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EN25_TRICV) HSP 1 Score: 119 bits (299), Expect = 9.700e-30 Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 1
Query: 13 ITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
+ FA+ G P+VLF MGANGMGKTTT+GK+ASRLR EGGQKVL+AA DTFRA AVEQL WADR+ + +P + + P +V+ + + A+ GYD LIVDTSG
Sbjct: 170 VKFAEEGEGCPTVLFVMGANGMGKTTTIGKLASRLRNEGGQKVLVAACDTFRAGAVEQLEMWADRAEVECYSPSEEKKTPAAVLYGSLDAAIAGGYDTLIVDTSG 274
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S2ZSH4_9RHOD (Hypothetical protein n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZSH4_9RHOD) HSP 1 Score: 117 bits (293), Expect = 4.480e-29 Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1
Query: 43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
P+V+ F+GANGMGKTTTVGK+ +R ++E G+KVLLAA DTFRAAAVEQL WADR+ DIV PL+ + P S RA +KA EGYDV+I+DTSG
Sbjct: 208 PTVVVFVGANGMGKTTTVGKLGTRYKKE-GKKVLLAACDTFRAAAVEQLATWADRAEVDIVKPLEGAKNPSSTAFRAVKKAQEEGYDVVIIDTSG 301
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S2BL25_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BL25_9STRA) HSP 1 Score: 118 bits (296), Expect = 5.450e-29 Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1
Query: 10 AITFADP---AVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
AI FA P A G P+VLF +GANGMGKTTT+GK+A RLR E GQKVLLAA DTFRAAAVEQL W++R+ D P ++P V+ A +KA+ YDVLIVDTSG
Sbjct: 248 AIAFASPEERANGMPTVLFVIGANGMGKTTTIGKLAHRLRNESGQKVLLAACDTFRAAAVEQLEMWSERAEVDFTGPRSDKDKPAFVLGAAIDKAIEGKYDVLIVDTSG 356
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A7S4JMD3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JMD3_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.110e-28 Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 1
Query: 43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
P+VLF MGANGMGKTTT+GK+ASRLR EGGQKVL+AA DTFRA AVEQL WADR+ D +P +S + P +V+ + + A++ GYD +IVDTSG
Sbjct: 231 PTVLFVMGANGMGKTTTIGKLASRLRNEGGQKVLVAACDTFRAGAVEQLEMWADRAEVDCFSPNESQKSPAAVLYGSLDLALSGGYDTVIVDTSG 325
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: A0A1Z5K4J0_FISSO (Fused signal recognition particle receptor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4J0_FISSO) HSP 1 Score: 115 bits (289), Expect = 3.290e-28 Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 1
Query: 43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
P+VLF +GANGMGKTTT+GK+A RLR EG Q VL+AA DTFRA AV QL +WADR+ D+V P D+ + P +V+ A +KAV E YD L+VDTSG
Sbjct: 181 PTVLFILGANGMGKTTTIGKLAHRLRTEGNQTVLVAACDTFRAGAVAQLQQWADRAQVDLVGPTDTVKSPAAVLYSALDKAVLEKYDTLLVDTSG 275
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Match: B7G5P8_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5P8_PHATC) HSP 1 Score: 112 bits (279), Expect = 8.310e-28 Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 1
Query: 43 PSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAAADTFRAAAVEQLMEWADRSGADIVTPLDSDERPPSVVSRAAEKAVNEGYDVLIVDTSG 327
P+VLF MGANGMGKTTT+GK+A RLR EG Q VLLAA DTFRA AVEQL +WA+R+ D+V P P +V+ A +K + E YD ++VDTSG
Sbjct: 95 PTVLFVMGANGMGKTTTIGKLAHRLRNEGNQTVLLAACDTFRAGAVEQLQQWAERAQVDMVGPSTKVTTPSAVLYAALDKGIAEKYDTILVDTSG 189 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1100.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1100.661.1 >prot_S-dermatodea_contig1100.661.1 ID=prot_S-dermatodea_contig1100.661.1|Name=mRNA_S-dermatodea_contig1100.661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp STAAITFADPAVGGPSVLFFMGANGMGKTTTVGKVASRLREEGGQKVLLAback to top mRNA from alignment at S-dermatodea_contig1100:1090..2150- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1100.661.1 ID=mRNA_S-dermatodea_contig1100.661.1|Name=mRNA_S-dermatodea_contig1100.661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1061bp|location=Sequence derived from alignment at S-dermatodea_contig1100:1090..2150- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1100:1090..2150- >mRNA_S-dermatodea_contig1100.661.1 ID=mRNA_S-dermatodea_contig1100.661.1|Name=mRNA_S-dermatodea_contig1100.661.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig1100:1090..2150- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |