mRNA_S-dermatodea_contig11.653.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11.653.1
Unique NamemRNA_S-dermatodea_contig11.653.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: D8LI27_ECTSI (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI27_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 2.620e-89
Identity = 132/159 (83.02%), Postives = 143/159 (89.94%), Query Frame = 1
Query:    1 QALEMAAARGPQEKWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNNIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            Q L MAA+    E+WV +LPI EAP  G AKSVYVADLDLCVAADE+GLLYV+GNKCPPANQPLSFS VSNNIIKDPVLGTKIDIETGDV+EWCP+LLGKLLSPILG +P+NAGVQTF+VR K GNLEAKVNVNAKAEFE SYWTGILDAQGKADGGY+
Sbjct:   39 QGLSMAASG---EQWVPILPIDEAPTPGTAKSVYVADLDLCVAADERGLLYVLGNKCPPANQPLSFSLVSNNIIKDPVLGTKIDIETGDVIEWCPNLLGKLLSPILGAQPENAGVQTFVVRQKGGNLEAKVNVNAKAEFEKSYWTGILDAQGKADGGYY 194          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A7S3P6K4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6K4_9STRA)

HSP 1 Score: 157 bits (397), Expect = 9.410e-46
Identity = 81/158 (51.27%), Postives = 102/158 (64.56%), Query Frame = 1
Query:    4 ALEMAAARGPQEKWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNNIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            AL MAA   P  K+V  +PI + P  G A S     L +C+A DEKG +Y +G+KCPP NQPLSF  V    I DPVLG+K D++TG+VV WCPS LGKLL    GG     GV T+ V+     +E +V+VN K  FEA+YW+GILDAQGK +G Y+
Sbjct:   48 ALNMAAKYKPALKYVPCIPIEQLPKPGSATSGEAGGLAICIAVDEKGAIYALGDKCPPVNQPLSFGKVEGGCISDPVLGSKFDLKTGEVVSWCPSGLGKLL----GGAFSPTGVVTYPVKKSGKFVEVQVDVNYKFNFEANYWSGILDAQGKDNGKYY 201          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A8J9X0V7_PHATR (Hypothetical protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X0V7_PHATR)

HSP 1 Score: 154 bits (390), Expect = 1.850e-45
Identity = 78/147 (53.06%), Postives = 103/147 (70.07%), Query Frame = 1
Query:   43 WVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVS-NNIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            +V  +P++E P  G A S     L +C+A D+KG +Y +G+KCPP NQPLSF  V+ +  I+DPVLGTK  ++TGDVV  WCPS +GKLL    GG    +GV T+ VR + G+LE +V+VN KA FE SYWTG+LDAQGK+DG Y+
Sbjct:    1 YVPCIPLSELPKPGSATSGIAGGLAICIAVDKKGSVYALGDKCPPVNQPLSFGKVNPDGTIQDPVLGTKFSLKTGDVVGAWCPSGIGKLL----GGAFTPSGVPTYPVRQRGGSLEVQVDVNYKANFEKSYWTGVLDAQGKSDGTYY 143          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A7R9VVY4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVY4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.900e-45
Identity = 79/159 (49.69%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    4 ALEMAAARGPQEKWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNNIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            AL MA       K+V  +P+ + P  G A S     L +C+A D  G +Y +G+KCPP NQPLSF  V+   I+DPVLGTK  ++TG+VV +WCPS +GKLL    GG  +  GV  F V+    N+E +V+VNAKA FE+ YW+GILDAQGKADG Y+
Sbjct:   32 ALNMAGLFQQSLKYVPCIPVEQLPKPGTATSGVAGGLAICIAVDPSGSIYALGDKCPPVNQPLSFGKVTAGAIEDPVLGTKFSLKTGEVVGDWCPSGIGKLL----GGLFEPVGVPVFPVKKSGANIEVQVDVNAKANFESQYWSGILDAQGKADGKYY 186          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A7S1DYV2_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1DYV2_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.280e-44
Identity = 75/149 (50.34%), Postives = 104/149 (69.80%), Query Frame = 1
Query:   34 QEKWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNN-IIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            ++K+V  L + + P  G A S     L +C+A D KG +Y +G+KCPP NQPLSF  V+N+  I+DPVLGTK  ++TGDVV WCP+ +GK    I+GG  +  GV  F VR  +G ++ +V+VNAKA FEA+YW+G+LDAQGKA+G Y+
Sbjct:   51 KKKFVPCLSLKDLPKPGFATSGVAGGLAICIAVDPKGSVYALGDKCPPVNQPLSFGKVNNDGTIEDPVLGTKFSLKTGDVVSWCPTGVGK----IIGGLFEPTGVPNFKVRQSSGTIQVEVDVNAKANFEANYWSGVLDAQGKANGKYY 195          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A7S0AYK8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AYK8_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.150e-44
Identity = 74/147 (50.34%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   40 KWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNNIIKDPVLGTKIDIETGDVV-EWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            ++V  +P+ + P  G A S     L +C+A D  G +Y +G+KCPP NQPLSF  V  N I+DPVLGTK  ++TG+VV  WCPS +GKLL    GG  D  GV T+ V+ K  N+E +V+VNAKA FE+ YW+G+LDAQGK++G Y+
Sbjct:   59 QYVPCIPVDKLPAPGSATSGVAGGLAICIAVDPSGSVYALGDKCPPVNQPLSFGRVDGNSIEDPVLGTKFSLKTGEVVGAWCPSGIGKLL----GGLFDPIGVPTYPVKKKGANIEVQVDVNAKANFESQYWSGVLDAQGKSNGKYY 201          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A1Z5JA31_FISSO (Rieske domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA31_FISSO)

HSP 1 Score: 151 bits (381), Expect = 1.410e-43
Identity = 73/142 (51.41%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   55 LPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVS-NNIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            +P+++ P  G+A S     L +C+A D KG +Y +G+KCPP NQPLSF  V+ +  I+DP+LGTK  ++TGDVV WCPS +GK    ILGG     GV  + VR + GN+E +V+VNAK  FEA+YW+GILDAQGK  G Y+
Sbjct:   45 IPLSDLPKPGKATSGVAGGLAICIAVDSKGSVYALGDKCPPINQPLSFGKVNADGTIEDPLLGTKFSLKTGDVVSWCPSGIGK----ILGGAFSPTGVPVYPVRQRGGNIEVQVDVNAKYNFEANYWSGILDAQGKDTGTYY 182          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A6U5FSV0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5FSV0_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.640e-43
Identity = 73/146 (50.00%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   40 KWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNNIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            K+V V+   +AP  G A S     L +CVA    G LY +G+KCPP NQPLSF  V+ + I+DPVLGTK  ++TG+VV+WCP+ +GKL+    GG  + AGV T+ ++S   N+E +V+VN K  FEA YW+G+LDAQGKA+G Y+
Sbjct:   46 KYVPVITKEQAPKPGSATSGVAGGLAICVACSPTGQLYALGDKCPPVNQPLSFGKVNKDTIEDPVLGTKFSLKTGEVVDWCPAGIGKLV----GGLFEPAGVPTYPIKSTGKNIEVQVDVNYKLNFEAEYWSGVLDAQGKANGKYY 187          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: A0A6U3SB47_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SB47_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.480e-42
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1
Query:   28 GPQEKWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNNIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            GP+ +++  +   + P  G A S     L +C+A DEKG ++ +G+KCPP NQPLSF  V    I DPVLGT+ D++TG+VV WCPS LGKL+    GG  D  GV  + V++K  ++  +V+VN KA FEA YW+GILDAQGK++G Y+
Sbjct:   34 GPKLQYMPCISTDDLPAPGSATSGVAGGLAICIAVDEKGSVFALGDKCPPVNQPLSFGKVVGGTIADPVLGTQFDLKTGEVVSWCPSGLGKLI----GGIFDPVGVPVYPVQAKGKSVNVQVDVNYKANFEADYWSGILDAQGKSNGKYY 179          
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Match: B8CBE4_THAPS (Rieske domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBE4_THAPS)

HSP 1 Score: 147 bits (372), Expect = 3.060e-42
Identity = 74/147 (50.34%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   40 KWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIGNKCPPANQPLSFSTVSNN-IIKDPVLGTKIDIETGDVVEWCPSLLGKLLSPILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKADGGYF 477
            ++V  +  A+ P  G A S     L +C+A D KG +Y +G+KCPP NQPLSF  V  +  I DPVLGTK D++TG+VV WCP+ LGKL+    GG  D  GV  + V++K   +E +V+VN KA FEA YW+GILDAQGKA+G Y+
Sbjct:   38 QYVPCISTADLPKPGSATSGVAGGLAICIAVDPKGAVYALGDKCPPVNQPLSFGKVDKDGTIADPVLGTKFDLKTGEVVSWCPTGLGKLI----GGLFDPVGVPVYPVKAKGSVVEVQVDVNYKANFEAEYWSGILDAQGKANGKYY 180          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI27_ECTSI2.620e-8983.02Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S3P6K4_9STRA9.410e-4651.27Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J9X0V7_PHATR1.850e-4553.06Hypothetical protein n=3 Tax=Phaeodactylum tricorn... [more]
A0A7R9VVY4_9STRA6.900e-4549.69Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1DYV2_9STRA1.280e-4450.34Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A7S0AYK8_9STRA6.150e-4450.34Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1Z5JA31_FISSO1.410e-4351.41Rieske domain-containing protein n=2 Tax=Fistulife... [more]
A0A6U5FSV0_9STRA1.640e-4350.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6U3SB47_9STRA1.480e-4248.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8CBE4_THAPS3.060e-4250.34Rieske domain-containing protein n=1 Tax=Thalassio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11contigS-dermatodea_contig11:46969..47448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.5
Seed ortholog evalue2e-69
Seed eggNOG ortholog2880.D8LI27
EggNOG free text desc.Rieske-like [2Fe-2S] domain
EggNOG OGs2DKM1@1,2S634@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-04_003000.1
Exons1
Model size480
Cds size468
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.676583-CDS-S-dermatodea_contig11:46968..474361622924182.676583-CDS-S-dermatodea_contig11:46968..47436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11 46969..47436 -
1694079074.818075-CDS-S-dermatodea_contig11:46968..474361694079074.818075-CDS-S-dermatodea_contig11:46968..47436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11 46969..47436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.688444-UTR-S-dermatodea_contig11:47436..474481622924182.688444-UTR-S-dermatodea_contig11:47436..47448Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11 47437..47448 -
1694079074.828064-UTR-S-dermatodea_contig11:47436..474481694079074.828064-UTR-S-dermatodea_contig11:47436..47448Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11 47437..47448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11.653.1prot_S-dermatodea_contig11.653.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11 46969..47436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11.653.1

>prot_S-dermatodea_contig11.653.1 ID=prot_S-dermatodea_contig11.653.1|Name=mRNA_S-dermatodea_contig11.653.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=156bp
MAAARGPQEKWVTVLPIAEAPPSGRAKSVYVADLDLCVAADEKGLLYVIG
NKCPPANQPLSFSTVSNNIIKDPVLGTKIDIETGDVVEWCPSLLGKLLSP
ILGGKPDNAGVQTFLVRSKNGNLEAKVNVNAKAEFEASYWTGILDAQGKA
DGGYF*
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mRNA from alignment at S-dermatodea_contig11:46969..47448-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11.653.1 ID=mRNA_S-dermatodea_contig11.653.1|Name=mRNA_S-dermatodea_contig11.653.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig11:46969..47448- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCACTGGAGATGGCAGCCGCACGAGGTCCTCAAGAAAAATGGGTGAC GGTCCTGCCCATCGCCGAAGCGCCGCCCTCGGGAAGGGCCAAGTCCGTTT ACGTCGCGGACCTTGACCTGTGTGTCGCTGCCGACGAAAAGGGCCTGCTG TACGTGATCGGCAACAAGTGCCCCCCCGCCAACCAGCCGCTATCCTTCAG CACAGTCTCAAACAACATTATCAAGGACCCGGTTCTTGGCACGAAGATCG ACATCGAGACGGGGGACGTTGTGGAGTGGTGCCCGTCGCTTCTGGGAAAG CTACTGAGCCCTATCCTTGGCGGTAAGCCCGACAACGCGGGCGTGCAGAC ATTCCTAGTGCGCTCCAAGAACGGCAACCTCGAGGCAAAGGTCAACGTCA ACGCGAAGGCAGAATTCGAGGCATCGTACTGGACGGGGATTTTGGACGCC CAGGGGAAAGCCGACGGGGGATACTTCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11:46969..47448-

>mRNA_S-dermatodea_contig11.653.1 ID=mRNA_S-dermatodea_contig11.653.1|Name=mRNA_S-dermatodea_contig11.653.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig11:46969..47448- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCCGCACGAGGTCCTCAAGAAAAATGGGTGACGGTCCTGCCCAT
CGCCGAAGCGCCGCCCTCGGGAAGGGCCAAGTCCGTTTACGTCGCGGACC
TTGACCTGTGTGTCGCTGCCGACGAAAAGGGCCTGCTGTACGTGATCGGC
AACAAGTGCCCCCCCGCCAACCAGCCGCTATCCTTCAGCACAGTCTCAAA
CAACATTATCAAGGACCCGGTTCTTGGCACGAAGATCGACATCGAGACGG
GGGACGTTGTGGAGTGGTGCCCGTCGCTTCTGGGAAAGCTACTGAGCCCT
ATCCTTGGCGGTAAGCCCGACAACGCGGGCGTGCAGACATTCCTAGTGCG
CTCCAAGAACGGCAACCTCGAGGCAAAGGTCAACGTCAACGCGAAGGCAG
AATTCGAGGCATCGTACTGGACGGGGATTTTGGACGCCCAGGGGAAAGCC
GACGGGGGATACTTCTAAATGGCAGCCGCACGAGGTCCTCAAGAAAAATG
GGTGACGGTCCTGCCCATCGCCGAAGCGCCGCCCTCGGGAAGGGCCAAGT
CCGTTTACGTCGCGGACCTTGACCTGTGTGTCGCTGCCGACGAAAAGGGC
CTGCTGTACGTGATCGGCAACAAGTGCCCCCCCGCCAACCAGCCGCTATC
CTTCAGCACAGTCTCAAACAACATTATCAAGGACCCGGTTCTTGGCACGA
AGATCGACATCGAGACGGGGGACGTTGTGGAGTGGTGCCCGTCGCTTCTG
GGAAAGCTACTGAGCCCTATCCTTGGCGGTAAGCCCGACAACGCGGGCGT
GCAGACATTCCTAGTGCGCTCCAAGAACGGCAACCTCGAGGCAAAGGTCA
ACGTCAACGCGAAGGCAGAATTCGAGGCATCGTACTGGACGGGGATTTTG
GACGCCCAGGGGAAAGCCGACGGGGGATACTTCTAA
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