mRNA_S-dermatodea_contig10965.637.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10965.637.1
Unique NamemRNA_S-dermatodea_contig10965.637.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10965.637.1 vs. uniprot
Match: D7FI24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI24_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.240e-37
Identity = 119/294 (40.48%), Postives = 156/294 (53.06%), Query Frame = 1 
Query:    1 ASCTFTPAINERSVRLAEAHESRRTLTEAALRSGSETDGESCLSGDNPIEGDRSGSRAESNGEVGGGGAARIGGRETPSKVMTKALQLYGDHAEMEQRKEEQQREFLSRTCPFTPDIGMSAAWPAQDISTEEFVRQDRKAENATRLHNEHWARERRVQEKRYIQYHDSYSAVDPNTGQPLFSPMINKRRQNRPRSD---------------GVGQRETEENREWWRLGGGGREGTGGVTAGEEG----DPEELQGIHARLWERGLALERRREAGARVREDARKARASGGHVNGR 825
            A+CTF P INE S RLAEA E+RR L E  +R+GSE+DG          EG + GS+ E   E     A    G    SKV+ K+ +L+ +HA+ EQR+E +++E LS++CPFTPDIG+SAAWP Q+ +TE+FVR                        KRY  +   ++++DP TG+P FSPMINK    R                   GV              G G +       AG +G      ++ + IHA LWERGLALERRREA AR RE+ARK+ A+ GHV GR
Sbjct:  688 ATCTFAPEINECSRRLAEAQEARRDLLEF-VRAGSESDGRG-----GGAEG-KGGSKREDT-EAAATRAGXXAGAAR-SKVIVKSHRLHAEHADNEQRRERRRKELLSQSCPFTPDIGVSAAWPIQETTTEDFVRXXXXXXXXXXXX---------XXAKRYTLHGAPHASIDPATGRPFFSPMINKTWAGRQHXXXXXXXXXXXXWFSRHGVTXXXXXXXXXXXXAGRGAKRPGDKGKAGTDGRCFYHDDDDRPIHASLWERGLALERRREADARSREEARKSAAAAGHVGGR 963
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BLAST of mRNA_S-dermatodea_contig10965.637.1 vs. uniprot
Match: A0A6H5JGR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 9.010e-25
Identity = 73/162 (45.06%), Postives = 98/162 (60.49%), Query Frame = 1 
Query:    1 ASCTFTPAINERSVRLAEAHESRRTLTEAALRSGSETDGESCLSGDNPIEGDRSGSRAESNGEVGGGGAARIGGRETPSKVMTKALQLYGDHAEMEQRKEEQQREFLSRTCPFTPDIGMSAAWPAQDISTEEFVRQDRKAENATRLHNEHWARERRVQEKRY 486
            A+CTF P INE S RLAEA E+RR L +  +R+GSE+DG                    +       GAAR       SK+M K+ +L+ DHA++EQR+E +++E LS++CPFTPDIG+SAAWP Q+ + E+FVR         RLH EH  +ERR+Q KRY
Sbjct:  826 ATCTFAPEINELSRRLAEAREARRDLLDF-VRAGSESDGSGXXXXXXXXXXXXRKDTPAAXXXXXXXGAAR-------SKIMVKSYRLHADHADIEQRRERRRKELLSQSCPFTPDIGVSAAWPIQETTKEDFVR---------RLHAEHAEQERRLQAKRY 970
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BLAST of mRNA_S-dermatodea_contig10965.637.1 vs. uniprot
Match: A0A6H5JFG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.500e-6
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  631 RLGGGGREGTGGVTAGEEGDPEELQGIHARLWERGLALERRREAGARVREDARKARASGGHVNGR 825
            R GG G+  T G+    + D    + IHA LWERGLALER+REA AR RE+ARK+ A+ GHV GR
Sbjct:   49 RPGGKGKVDTDGLCFYHDDD----RSIHASLWERGLALERKREADARSREEARKSAAAAGHVGGR 109
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10965.637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI24_ECTSI1.240e-3740.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGR6_9PHAE9.010e-2545.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG4_9PHAE1.500e-655.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10965contigS-dermatodea_contig10965:4258..6935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size828
Cds size828
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10965.637.1prot_S-dermatodea_contig10965.637.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10965 4258..6935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924181.8203113-CDS-S-dermatodea_contig10965:4257..45691622924181.8203113-CDS-S-dermatodea_contig10965:4257..4569Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 4258..4569 +
1694079074.2447288-CDS-S-dermatodea_contig10965:4257..45691694079074.2447288-CDS-S-dermatodea_contig10965:4257..4569Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 4258..4569 +
1622924181.8329268-CDS-S-dermatodea_contig10965:5320..54391622924181.8329268-CDS-S-dermatodea_contig10965:5320..5439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 5321..5439 +
1694079074.252707-CDS-S-dermatodea_contig10965:5320..54391694079074.252707-CDS-S-dermatodea_contig10965:5320..5439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 5321..5439 +
1622924181.841184-CDS-S-dermatodea_contig10965:6160..62171622924181.841184-CDS-S-dermatodea_contig10965:6160..6217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 6161..6217 +
1694079074.2708626-CDS-S-dermatodea_contig10965:6160..62171694079074.2708626-CDS-S-dermatodea_contig10965:6160..6217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 6161..6217 +
1622924181.853111-CDS-S-dermatodea_contig10965:6595..69351622924181.853111-CDS-S-dermatodea_contig10965:6595..6935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 6596..6935 +
1694079074.2814627-CDS-S-dermatodea_contig10965:6595..69351694079074.2814627-CDS-S-dermatodea_contig10965:6595..6935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10965 6596..6935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10965.637.1

>prot_S-dermatodea_contig10965.637.1 ID=prot_S-dermatodea_contig10965.637.1|Name=mRNA_S-dermatodea_contig10965.637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=276bp
ASCTFTPAINERSVRLAEAHESRRTLTEAALRSGSETDGESCLSGDNPIE
GDRSGSRAESNGEVGGGGAARIGGRETPSKVMTKALQLYGDHAEMEQRKE
EQQREFLSRTCPFTPDIGMSAAWPAQDISTEEFVRQDRKAENATRLHNEH
WARERRVQEKRYIQYHDSYSAVDPNTGQPLFSPMINKRRQNRPRSDGVGQ
RETEENREWWRLGGGGREGTGGVTAGEEGDPEELQGIHARLWERGLALER
RREAGARVREDARKARASGGHVNGR*
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mRNA from alignment at S-dermatodea_contig10965:4258..6935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10965.637.1 ID=mRNA_S-dermatodea_contig10965.637.1|Name=mRNA_S-dermatodea_contig10965.637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2678bp|location=Sequence derived from alignment at S-dermatodea_contig10965:4258..6935+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTCTTGCACGTTTACACCCGCGATCAACGAACGGTCCGTACGGCTTGC
TGAGGCTCACGAGTCACGTCGAACCCTCACCGAGGCTGCCCTTCGCTCGG
GCAGCGAGACAGACGGCGAAAGCTGCCTGAGCGGCGACAATCCCATCGAA
GGCGACAGGAGTGGCTCGAGGGCTGAGAGCAACGGGGAAGTTGGGGGTGG
GGGTGCCGCCAGAATAGGCGGCCGAGAAACTCCGTCGAAGGTCATGACCA
AGGCGCTTCAGCTTTACGGCGATCACGCGGAGATGGAGCAGCGAAAGGAA
GAGCAGCAGAGAGTGAGTAACTCGTTCTCCGGTATAAGAGTTGAGACGGT
GTAGGGGGAGGAGGATCTGATAGTCGTGTAGCCGGCCCATCTCTCGCCAC
GTGCTTGCGCCTTCAAGATAACAGTATGGTTGAAACGTCCAGGCTGAGAT
CCACTCCTTACTATATTTTTAAATCGTGCCTTCACGGGGGTGTTGTAGAG
GAGCGAAATGACAGAGCTACGGAGGGCAGTGAACTGCGATGATCTCCGTG
TACCACCCCGGGCAACTCGTGTTGCGATTGCAGAGGGCCGGGAGGGGGGG
GGGGGGCTTGCGATTGATGGAACAAACACATAACTTACATGGGAAAGACC
CGCAGGGTTTGGTATTTCTCTACGCATGCAAGAGGCGTCGATGAGACCAG
GTGTTGCCCGGACGCGTCGGCGCCAACCTAACGGACAGAACGGCACGACA
TACGCCACGCGCGCTCCCGCGTTGACCTGGGATCTCGCCAAAGGCTATGT
AAGGTGGGGGGGCTTAAAATTCCCCCCGTTCAGGCTTCTATGTATGTATA
TCGCACGAGAGATGGAATTACATGGACGTGTGATGGGCCGGGGATCGAGC
AATCACACTCATTCTCCCTGCCGGAACAACGCCCGCTGCTCGGCTGACTG
CCGTGTGCTCACGAGCTCAATAACCCAATTTGCTTTCCCTTTCGCTGACT
TTTCGCTCTCAGCATACGTCCAATAATTCAGCTCCCGTGTTTCTTACTTC
ACATGCGTTGCAGGAGTTTTTGTCTCGAACGTGCCCGTTTACGCCGGATA
TCGGGATGAGCGCTGCGTGGCCTGCTCAAGACATCAGCACCGAGGAGTTC
GTAAGGCAAGATAGAAAAGCGGAGAACGCAACGTAGAAACTGCTTAGCTT
AAGATGAAGGAGATAATGAACGTCGTACCCTGCGCGCGCAGACGGGGGTT
GGGGAATGGCCGCTTATCTATTCCCACGGCTAGTATCTGGGAATACGTGT
CACGGAAGGCAACGGGGACGGCGAACGTTGTAGAGACGGAAACAAGACGA
GTCGGTCTCAGGGTGATTGGAGAACCGTTTCTTGCCTGCCGTCGAGTGAC
ACGTTCCCATGGGAAGATCCCGATACTCTAGGCAAGGGCAAACATCAATG
TGTGTAGCATACGATCCTCACGGTCTCACTGTTTACAGTAGTAGTATGGC
ACAGAATGCCCACTTTGCTCAACGATCCGTTCGTACTTGAGACTTATTTT
CCTTGCTTTAGTCGTGCCAGCGTCCACCACGGCCTAGGATCGGAGGATGT
ACGTGTACTATACCTTGACAGAAGAGGGGCATATGAGGTGTGCCGTAACA
TAAACAAGTACCGACAAAACCGTATCGACCGATGAGAGATTCTCGCTTTT
TCGCGGTCACATTCTCGTGTCCAAGCCTAGCGAGTCGAGAAACACCTCCG
GTCAGCCCGCGCAAGCTGCGTCCGAACGGGGGTACTCATTGGCAGCAGGG
TGCGTGAAATTGTGGCCACGCACATACTCCGTGACCCCCTCGCCCGTACC
CTTCGACTGCTGCTCTCTACCATGACCGCTGTGGAACTTTCTGTCCCGGA
TAGTCGCTTACACAACGAGCACTGGGCGCGAGAGCGCCGGGTCCAAGAGA
AGCGATACATGTGAGGACAGAAAAGAGGGCTTACACTCGGCACTTTTTCC
TCTCTATTAGTGATGCGTACGGTCCAGCAGTACCGCGACAGCAAACTGAG
TTGCGCAGGATATGCTGTTATCGCCGGCTGGTGTACGGCGAGCCAGAGCT
GCTAGCCGAATGGAAGTTGTCACATAATCGAGGGTGCCATTTACGTAGGT
AATGACCAACGATGTCATTCCCTCGTTAACACACCAACAGCAAGGGGCTG
ACACCACGCCGTACTGTCACCCTCCGAAGACCCCCGCACTCCCCGAGCAT
TTGTGCCGCAATTGTTTCCTCCAAACATTCTCACAGCTTCTGTCATCCCT
GTGCCTAATCCCCCGTCCCGCCATATTTACCCTACCAGACAGTACCACGA
TTCCTATTCCGCCGTTGATCCAAATACTGGGCAGCCCCTGTTCTCTCCGA
TGATCAACAAACGCCGCCAAAATCGACCGCGAAGCGACGGGGTCGGACAG
CGAGAAACGGAAGAAAATCGGGAGTGGTGGAGGTTAGGGGGCGGGGGGCG
AGAAGGCACGGGGGGGGTCACCGCTGGCGAAGAAGGAGACCCTGAAGAGC
TGCAAGGGATCCACGCGAGGCTGTGGGAACGGGGCTTGGCGCTGGAGCGA
CGAAGAGAGGCCGGCGCGCGCGTGAGGGAAGATGCGAGAAAAGCCAGGGC
GTCGGGGGGGCACGTGAACGGCAGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10965:4258..6935+

>mRNA_S-dermatodea_contig10965.637.1 ID=mRNA_S-dermatodea_contig10965.637.1|Name=mRNA_S-dermatodea_contig10965.637.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at S-dermatodea_contig10965:4258..6935+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTCTTGCACGTTTACACCCGCGATCAACGAACGGTCCGTACGGCTTGC
TGAGGCTCACGAGTCACGTCGAACCCTCACCGAGGCTGCCCTTCGCTCGG
GCAGCGAGACAGACGGCGAAAGCTGCCTGAGCGGCGACAATCCCATCGAA
GGCGACAGGAGTGGCTCGAGGGCTGAGAGCAACGGGGAAGTTGGGGGTGG
GGGTGCCGCCAGAATAGGCGGCCGAGAAACTCCGTCGAAGGTCATGACCA
AGGCGCTTCAGCTTTACGGCGATCACGCGGAGATGGAGCAGCGAAAGGAA
GAGCAGCAGAGAGCTTCTTGCACGTTTACACCCGCGATCAACGAACGGTC
CGTACGGCTTGCTGAGGCTCACGAGTCACGTCGAACCCTCACCGAGGCTG
CCCTTCGCTCGGGCAGCGAGACAGACGGCGAAAGCTGCCTGAGCGGCGAC
AATCCCATCGAAGGCGACAGGAGTGGCTCGAGGGCTGAGAGCAACGGGGA
AGTTGGGGGTGGGGGTGCCGCCAGAATAGGCGGCCGAGAAACTCCGTCGA
AGGTCATGACCAAGGCGCTTCAGCTTTACGGCGATCACGCGGAGATGGAG
CAGCGAAAGGAAGAGCAGCAGAGAGAGTTTTTGTCTCGAACGTGCCCGTT
TACGCCGGATATCGGGATGAGCGCTGCGTGGCCTGCTCAAGACATCAGCA
CCGAGGAGTTCGTAAGGCAAGATAGAAAAGCGGAGAACGCAACGAGTTTT
TGTCTCGAACGTGCCCGTTTACGCCGGATATCGGGATGAGCGCTGCGTGG
CCTGCTCAAGACATCAGCACCGAGGAGTTCGTAAGGCAAGATAGAAAAGC
GGAGAACGCAACTCGCTTACACAACGAGCACTGGGCGCGAGAGCGCCGGG
TCCAAGAGAAGCGATACATTCGCTTACACAACGAGCACTGGGCGCGAGAG
CGCCGGGTCCAAGAGAAGCGATACATACAGTACCACGATTCCTATTCCGC
CGTTGATCCAAATACTGGGCAGCCCCTGTTCTCTCCGATGATCAACAAAC
GCCGCCAAAATCGACCGCGAAGCGACGGGGTCGGACAGCGAGAAACGGAA
GAAAATCGGGAGTGGTGGAGGTTAGGGGGCGGGGGGCGAGAAGGCACGGG
GGGGGTCACCGCTGGCGAAGAAGGAGACCCTGAAGAGCTGCAAGGGATCC
ACGCGAGGCTGTGGGAACGGGGCTTGGCGCTGGAGCGACGAAGAGAGGCC
GGCGCGCGCGTGAGGGAAGATGCGAGAAAAGCCAGGGCGTCGGGGGGGCA
CGTGAACGGCAGGTAAACAGTACCACGATTCCTATTCCGCCGTTGATCCA
AATACTGGGCAGCCCCTGTTCTCTCCGATGATCAACAAACGCCGCCAAAA
TCGACCGCGAAGCGACGGGGTCGGACAGCGAGAAACGGAAGAAAATCGGG
AGTGGTGGAGGTTAGGGGGCGGGGGGCGAGAAGGCACGGGGGGGGTCACC
GCTGGCGAAGAAGGAGACCCTGAAGAGCTGCAAGGGATCCACGCGAGGCT
GTGGGAACGGGGCTTGGCGCTGGAGCGACGAAGAGAGGCCGGCGCGCGCG
TGAGGGAAGATGCGAGAAAAGCCAGGGCGTCGGGGGGGCACGTGAACGGC
AGGTAA
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