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Homology
BLAST of mRNA_S-dermatodea_contig10945.624.1 vs. uniprot
Match: A0A6H5L623_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L623_9PHAE) HSP 1 Score: 132 bits (332), Expect = 5.260e-33 Identity = 71/124 (57.26%), Postives = 85/124 (68.55%), Query Frame = 2
Query: 212 PPQEA---LRGGGS-------ADAGVDRVTSSSCSGVGQE---PAAIAHPYDRVLILDVDGTLYGQASGVEQQIVDGIHEFFREELGLSPAECDEVHHRHGSTIWGLQQEGRVTAGQVERYYEK 544
PP+ +RGGG+ A AGV V S G + A A P RVLILDVDGTLYGQ+SGVEQQIVDGIH +F ELGL+P EC+++H RHGST+WGLQQEGR+T QVERYY++
Sbjct: 44 PPEHVVGGIRGGGTSRVEESTATAGVGIVKDSCSPGANTDLRSREAEAEPSQRVLILDVDGTLYGQSSGVEQQIVDGIHRYFAGELGLTPEECNDIHRRHGSTVWGLQQEGRLTQHQVERYYQE 167
BLAST of mRNA_S-dermatodea_contig10945.624.1 vs. uniprot
Match: A0A835YST1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST1_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.550e-18 Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query: 329 RVLILDVDGTLYGQASGVEQQIVDGIHEFFREELGLSPAECDEVHHR----------HGSTIWGLQQEGRVTAGQVERYY 538
RVL+LDVDGTLYG +GVEQQIV IH F +EL ++P +CD++HHR +GSTI GLQ EG VT QV+ +Y
Sbjct: 35 RVLLLDVDGTLYGPEAGVEQQIVANIHRFVEQELSITPQQCDQLHHRQVNDGPKDALYGSTIEGLQAEGLVTPAQVQAFY 114
BLAST of mRNA_S-dermatodea_contig10945.624.1 vs. uniprot
Match: A0A7S0TWR3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TWR3_HEMAN) HSP 1 Score: 65.5 bits (158), Expect = 1.330e-9 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 2
Query: 326 DRVLILDVDGTLYGQA-SGVEQQIVDGIHEFFREELGLSPAECDEVHHRHGSTIWGLQ 496
+ V+++DVD TLY ++ +G+E+QIV GIH F + L+P CDE+H HGSTI GL+
Sbjct: 79 NEVVVIDVDNTLYDESETGIEKQIVAGIHSFCAKHFNLTPETCDELHRTHGSTIQGLK 136
BLAST of mRNA_S-dermatodea_contig10945.624.1 vs. uniprot
Match: A0A1Z5JW93_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW93_FISSO) HSP 1 Score: 65.1 bits (157), Expect = 5.020e-9 Identity = 28/58 (48.28%), Postives = 45/58 (77.59%), Query Frame = 2
Query: 329 RVLILDVDGTLYGQAS-GVEQQIVDGIHEFFREELGLSPAECDEVHHRHGSTIWGLQQ 499
++L++DVD TLY + + G+EQQIV IH F +E LG++ ++ DE+H ++GST+ GL+Q
Sbjct: 32 KILLIDVDNTLYNERNHGIEQQIVQNIHRFCQERLGMTVSQADELHAKYGSTVEGLRQ 89
BLAST of mRNA_S-dermatodea_contig10945.624.1 vs. uniprot
Match: D7FVW7_ECTSI (ADH_zinc_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW7_ECTSI) HSP 1 Score: 52.8 bits (125), Expect = 8.560e-5 Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 2
Query: 227 LRGGGS-------ADAGVDRVTSSSCSGVGQEPA----AIAHPYDRVLILDVDGTLYGQASGVEQQIV 397
+RGGG+ A AG+ V SCS G A A P +RVLILDVDGTLYGQ+SGVEQQ++
Sbjct: 52 IRGGGTSRAQESTATAGIG-VVEDSCSPGGNADLWSREAGAEPSERVLILDVDGTLYGQSSGVEQQVL 118
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 65.9 |
| Seed ortholog evalue | 2.2e-08 |
| Seed eggNOG ortholog | 55529.EKX38903 |
| EggNOG free text desc. | L-threonine 3-dehydrogenase activity |
| EggNOG OGs | 2REAB@2759,COG1063@1 |
| COG Functional cat. | E |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Model size | 545 |
| Cds size | 522 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622924181.0079489-UTR-S-dermatodea_contig10945:1029..1051 | 1622924181.0079489-UTR-S-dermatodea_contig10945:1029..1051 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10945 1030..1051 + |
| 1694079073.727904-UTR-S-dermatodea_contig10945:1029..1051 | 1694079073.727904-UTR-S-dermatodea_contig10945:1029..1051 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10945 1030..1051 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10945.624.1 >prot_S-dermatodea_contig10945.624.1 ID=prot_S-dermatodea_contig10945.624.1|Name=mRNA_S-dermatodea_contig10945.624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=174bp
MVVRRMLLHVLVLQLLLLVRVGCVTLDAVVGPTTTLPWRIGQRAGLPSAH DNRSIVSLCRRKRPPQEALRGGGSADAGVDRVTSSSCSGVGQEPAAIAHP YDRVLILDVDGTLYGQASGVEQQIVDGIHEFFREELGLSPAECDEVHHRH GSTIWGLQQEGRVTAGQVERYYEK back to topmRNA from alignment at S-dermatodea_contig10945:1030..7067+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10945.624.1 ID=mRNA_S-dermatodea_contig10945.624.1|Name=mRNA_S-dermatodea_contig10945.624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6038bp|location=Sequence derived from alignment at S-dermatodea_contig10945:1030..7067+ (Saccorhiza dermatodea SderLu1190fm monoicous) AGGCGCTCGGCCTCTGTGTAGCATGGTGGTTCGGCGTATGCTTCTCCACG
TGTTGGTGCTTCAGTTGTTGCTGCTGGTGCGTGTGGGTTGCGTGACGCTG
GACGCAGTGGTCGGGCCAACAACAACGCTCCCCTGGAGGATCGGACAGCG
AGCCGGCCTTCCTTCTGCTCATGATAATCGCAGCATCGTCTCGCTCTGCC
GGCGAAAGCGACCGCCTCAGGAAGCTCTGAGGGGCGGAGGGTCGGCAGAT
GCAGGGGTCGACCGTGTCACTAGCTCTTCTTGTAGTGGCGTGGGCCAGGA
GCCTGCGGCTATCGCGCATCCATATGACCGGGTGAGCACAACGACAGCAC
TGACCATTTGTACTGCGACTGGTGTTGACTTGCTTTGTGTCTCGTCATGT
TTAACGTATTTATGGTCACGGGCGTCGTTAGGCCGTGTCATATACCAATA
CTTAGCCCTCTCACGTGAGCCTGCCCTTGTGAGGTGCATCGCCCGCGGCA
GCAAGCAGAGCTTTGTCTCCATTCGCCGATGCTAACGAATGCTCTCTCGC
ACCAACTCGTGCAGAGCAGCCAGCGGTACAGACGCAGCAGTATCCTATTT
GACTGCTTGTTGTACCCTGCTGAGAAGTTATGTGCTCTTGTGAAGCTCGA
GGCGGCCCTTGGGTCGTCGGTCATCTTATCGTCGGAACGAACGTGTGACA
GCAATCAAAACACTTATTTGCTTGTTTTGGGACTGGCTCGTGGTGTTGAG
TCCTTTTTTCACGCCCATCGGTTAATATTATTAGTGTTTACTACACCCCG
CGCCCCGTGGTTAATATTATTATTGTTTACTACACCGGGCGCCCCTTGGT
TGAGCTGGTTGACCAACAGCCCAGCAGGCGGAGGACTGACCCGGATTCAT
ATCCCGGCAGATGAGGACACTACCGTTGTGGTTCAGGACACGAAGGTCCA
CAGGGTGCAAGACCCTAGGCAGCCAGATTATGTTTCAGTGGGTAGCGAGG
AGCACCCTAATATTATATCACAATGATTATCACATACCATCACTAAATTA
TCACGCTATTCTATCACTCTCTGGGTGTTAGTCCTGTTGGTCTTGTGATC
GTTCAGAGGCGATCAGTCAGCCTCGGCCATGGAGATTGGAAACCTCCGGG
ATGTGCGTGTAGGGGAATAGAGCTATTTCCTTGGAATCATGTGCTCTCCA
CACAGAGTCGATATTTATTTATTTTCTCTACCCCCGCCGCGGAAAGCGCG
AGAGCGTGAATAAGCAAAAAAACTCCGAGAAATCGGCGAGCTGTGGGAAT
GCCGAACCCAATGCATTCGCGATAAAAATCAAAGGTGAGAACCGGGATAA
GAGAGATGGGATGATCCCTTGTGACCACAGACGGACCTCGACAACAACAA
CAACAACAACAACTGTATCGTACTTTGTGCAAAGTACCCAACCGCGGCTA
CTCCTTGCCGTAAGCAGCGACGGTTGACAACCGGCATCCCGCGATACGCT
CACGTCTGTCATGTTGTATACCAGTACGTTATACTATAATAGGTCGCATG
CAAGGGTGCACCTGTAAGTGTGTGTGTAGCCGTCGCATGCACTTGTGCCC
ACTCTAATAACAATACAGACAGTAATGTGGTACAGGTCATCTACTTTCGC
AAGGCGGAACCCAGACCCTAAACTGAACAATCAACTTTAACCCTTCTGGT
ACTAGCCCCCTGTTGGGAGCGCTGGTTACACGTATTGAGGCGTGCTTAAA
GCGGAGCCCTGGGGAACGGAACCCACGGCTTATGGCGCAGGATATGAGAA
GGAATGGAACCCAAGGGAACAGGGGCTATCGTAGCTGTCGACTGGCATCG
AGAGAGTTTTTGGTCGGTTCGGAGAGCCATACTATTAACAATATACTTAT
GAATACTGTAATAGTACCAAAAGGGTTAGCTTCCACATCGATATCCACGT
TTCAAGATTATATCGAGTGTCTTTTCTTTTCGTCTTAGGCGCGCTTCTTT
CCCTTTTTTGTACTACTATTGTACCATGTATAATACTACACTGATGTACA
TATCTCTGCAATATGCGTATCATGCATCTGCGCCATCTCTTTTGACGCCC
TGCTTTGCGAACGCGTACGTGCTGCTACAATTGCGGCTTCGACGCTGCCT
ACTGCTGCTATGCGTACTGCGGTGGTGTCCGTTCGGCGAACCATGCAATC
CGACTCCGGGGTGTGTGTGTGTATTTCTGTGTGTGTGTTGGTGCCTGCGA
AGGTCCTCATCCTCGACGTGGACGGCACTCTCTACGGCCAGGCCAGCGGG
GTGGAGCAGCAGGTGTGTGGGACCCGACGTATCTAAGGCTAAGACGTAAC
GTGAACGTTGCTAACCGGACGCTTTGTCGGGGCGTACATTTTTTTCTTAT
TTTGCCATGGGTAAGTACCATGGACGGACGGTATTGTGTGTTGTAGAAGT
AGAGTTCTGATTCGTTGTTTTATCGTTGACTATTTGCGCAAGCATCTATC
TGACCACAAGCATGGTCCGATGATTCCGATCGGCTATCATACAAGTACAC
ATATGCGGATCAACCAATCAAATCAATCAACACACACGCACAGGTATTAG
ACCGCAGAGGTACATTACGCATATTCTCAAAGTGAGCGTGGGATTAGGTG
CGGTTTGGATACATACGGTATGATCCGTGCTGGAAGTGAGGATGCTTCTC
GAACGGACGGCCGTAGGCTATGATGGGCGAGCGAGGCCGTCGGCTTCTCG
CCCGGTCCGGCCGGGCCCACCGCGCAATGTGTCACGACAAGCACACCTGC
TTAAACAGTCTGTTTTGTTCGCCGGGCCTGCTGGTGCTGCTTGCTGCTGG
TGCTGCAGTACATTGTAGCGCTAAGCTTTGTGTTGTTTTTTGCGTTGAAG
CTGGTTGGAGAATCGAAACGAGTGCGCAGCTCTACCGCAAATCAATCCCC
GCCGTTAACCCTACTACTTCTGCCTGAAGAGATCCTCACCAGCCAGCCCG
GCCCCCCGGGCGAGGAATTCCGCACGAGGTGGCCTGTGCGTCACTTGCTG
GCCCACGTGTGTGTTCTGCGCTGGCTGTGATCGAAACTTAACGGTTGCTT
AGATTTCTACTATTGTACAATAGGCTGCTGTTTGAAGCAGAACAACGCTT
GCATTTTTGTTTTGGCTACTCACGATACACAGGTAGCATCCCATTGCCCC
TTGACCCCTCTCCCACGCGACAACGAGTGAAGCGCACGTCCCCCCCCACC
CTTTTAAGTACGCCGATGGCTGCCGCATGGGCGCCAGCCTCTATGCAGCA
CCAATCGCTGGCAGGGAGCGAGGCACACTCGTGTAAATATCGGAACCCCG
GATAGTCCGTTAGAGACGCACACACTCCCAGCAGTGATTTTATTTTCACC
CCACGTCCCACAGGACAGCTCCAGAGCTCCTTCCGAAATTCGGCGATTGA
GCTGCGAGATTGCTGAACGAAACCCAACGAGGGATGAAAAAACAAAAGAC
TCAGCCGTGTACGACGTATTCGCCTAGTTTTGTTTTGTTTTTTATGTGTG
TTTTGTACCGGGGATGTGTGTGATGGTCCCTCGTGACCACAGACGGGATT
CCTTTTTCGCTTGTAATTGTATCGGAGAGAGATGGGGTGGCAGGGGATGG
TCCCTCGCGACCACAGACGAGATTCGTTTTTCGTTTGTGTATTTTGTATC
GGGGCGAGATGGGATGGGATGGGATTATCTCTCGTGACCACAGACGGGAT
TCGGATCATGCCGGCCAGTCGCACTACATGAGCTGCAGAACAACCCAACC
TAAATCGCAGCGCTGACAAAGACGACGTCTGCGCCCGTGCTACCGCCCGA
AGCACCGACCTGGTCGTTCGCCACCCACCCAGCCAGCCACCCACCCACCC
CCCTCCCTCCCCCCGCGCCCCGCCCCTCGCCGCTCACGCCTGAACACGTG
GGCGGGTTCGCGTCGCCCAGATCGTGGACGGCATCCACGAATTTTTCAGG
GAGGAGCTCGGGCTGTCGCCGGCAGAGTGCGATGAAGTTCACCACCGGTA
GGGCATGTCGTAGGTAGTCGCCGTCGCCAGACGCAACCATAGGTTTACAA
TAGGTATGATGCATACAGTGTAGAGCGAACAGCACTCTCTCAGCAAGGTA
TAGGTGCGAGAGAGGACATAAAAGGCACAGCAGTAGTAGGGAACTGTTTA
GGGTTTTATGCATCGCACGGTAAGAACAGCACCACTCCCAAGTCGTGAGA
GTCGTCTTGAGTCACCCCCCCGTAGCGAAACAAAGATTTTACTACAGGCC
AGCCGCACGGGCGGACTTGCCCGAGAGACTCCGATCAAAGCTCGGAAAAA
GAAAAGCACCAGCATGGCATCGAAAACCACGCATCAACGCAAAATGACTT
TAATGGTACATGGCAGGCGTTGCTGTAGGAAAGAGAGGTGGCTGTTTTCA
TTTTTGTTTTAGGAGAGCGAAGTTCCTAGGTATGTCCCCCCCCCCCCTGT
TTCCGACCTTTGTGCTGATGCTTTTACTTCATTAATCGCGGTTTGAATAT
TTTTTCAATAGATAGCGAGTTTAGAGTGAGATTTTGTCCGACAAAAAAAA
TCCTGCACGTTTTTTTATGCCAAAACAACTTGATGGTTGTGTTGAGCGCC
AAAAAACGTGCCCCCGCATGCTCGGCTTCTTACGCCTGCCGTGGGTACGA
CCGCCACACCGTATTCTCCAAACCCATATCATACGTATATCGTATCGTCC
TGCGAACGCACACCTCACGGGCGTCGCGGTGGCTATTAATACATTAATAC
CTACTATTAATAGCGCTACAGTATTATATATTAACCCGGTTGGTAGTATT
ATACTATGAAGTATTATATTAGTGTCATAAGGGCTCTCCGAAACGACCAA
AAACTACCTCTCGATGCTAGTCGACAGCTACAGCCCCCGTTCCCTTACGC
TCCGGTCTCTCTCACTCCTGCGTCATAACCCATGGTGTTCCCCGGGGGGT
CCGCTTCAAGCACGCCTCATTACGTGCTAACAGGCACTCCAAACAGTGGG
CTAGTACCAAAAGGGTTAAGTACTGTGTGTAGGTATTTCCGTAGTGTTTT
GTTTCGATATCTCGATTTTTTTCATCTGACCACGAGATAGCGGGATCGGC
ACCCACTGGCGGGCCGGTCGGTTGTGAGTGTGATGACCAATCAATCAATC
AATCAATCAATCAGCCAATCAAATCGGCGGGCCGGTCGGCTGTAAGTGTG
ATAACCAATCAATCAATCAATCAACCAGCCAATCAAACATTGTGTTGAGT
TCACCGGCGGCAGTTTCTGCTGGGACTCTTGCCTGTTCTTTGTTTTGGTA
CTGTGATACATCAGCGTAAGTAGAGTTTTCCCCTGGTGAAGAGCCTGCAA
GTACGTTGTGTTTTTTCTCTCTGTTCGCAATCGCGACGAAACCACGCGTG
GCCGTCAGAGATGCGCTGGCCGCTGCTCATTCGTCCGGTCACACCTTCGC
GCGTGGTCTGCGTTCGCGTTGCAGACCCGGAGACCGCCACCGCCGCGCAA
TTGCCATGGAGCTATGCGTTCGTTTGTGTGTGTGTTTTCGGCTGGTTATT
CCGTGCGTACATATAACATTTCGTGTGTCCGCTTTTTATATATTTTCATG
TTTTCCTCGCTATCATAGACTCGTCGATGATTCTGTTACCACGACCCTGA
ATTCTGATACAGAGGTGTGTTTTTTTGCATTAGTCAACTTTGAGGATCGT
CATTTGATCGCCATCAGCATATTCCACCATCAGGGTCATCGCCATCGTAA
ATCATCTTAATCATCGTCACCATCATGGTCATAACCGGCACCGTCACCGT
CAAGATCGTCATCATCATCATCATCATCACCATTGCCATCATCATTATCA
CCACCACCAGCATCGTGACCACCATCAATCCGACCCCACTGCCGTGCCGC
TTTGCCGCGCAGGCACGGGTCCACGATCTGGGGACTCCAGCAAGAAGGGC
GAGTTACGGCCGGCCAAGTAGAGCGGTACTACGAAAAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10945:1030..7067+ >mRNA_S-dermatodea_contig10945.624.1 ID=mRNA_S-dermatodea_contig10945.624.1|Name=mRNA_S-dermatodea_contig10945.624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at S-dermatodea_contig10945:1030..7067+ (Saccorhiza dermatodea SderLu1190fm monoicous) ATGGTGGTTCGGCGTATGCTTCTCCACGTGTTGGTGCTTCAGTTGTTGCT GCTGGTGCGTGTGGGTTGCGTGACGCTGGACGCAGTGGTCGGGCCAACAA CAACGCTCCCCTGGAGGATCGGACAGCGAGCCGGCCTTCCTTCTGCTCAT GATAATCGCAGCATCGTCTCGCTCTGCCGGCGAAAGCGACCGCCTCAGGA AGCTCTGAGGGGCGGAGGGTCGGCAGATGCAGGGGTCGACCGTGTCACTA GCTCTTCTTGTAGTGGCGTGGGCCAGGAGCCTGCGGCTATCGCGCATCCA TATGACCGGATGGTGGTTCGGCGTATGCTTCTCCACGTGTTGGTGCTTCA GTTGTTGCTGCTGGTGCGTGTGGGTTGCGTGACGCTGGACGCAGTGGTCG GGCCAACAACAACGCTCCCCTGGAGGATCGGACAGCGAGCCGGCCTTCCT TCTGCTCATGATAATCGCAGCATCGTCTCGCTCTGCCGGCGAAAGCGACC GCCTCAGGAAGCTCTGAGGGGCGGAGGGTCGGCAGATGCAGGGGTCGACC GTGTCACTAGCTCTTCTTGTAGTGGCGTGGGCCAGGAGCCTGCGGCTATC GCGCATCCATATGACCGGGTCCTCATCCTCGACGTGGACGGCACTCTCTA CGGCCAGGCCAGCGGGGTGGAGCAGCAGGTCCTCATCCTCGACGTGGACG GCACTCTCTACGGCCAGGCCAGCGGGGTGGAGCAGCAGATCGTGGACGGC ATCCACGAATTTTTCAGGGAGGAGCTCGGGCTGTCGCCGGCAGAGTGCGA TGAAGTTCACCACCGATCGTGGACGGCATCCACGAATTTTTCAGGGAGGA GCTCGGGCTGTCGCCGGCAGAGTGCGATGAAGTTCACCACCGGCACGGGT CCACGATCTGGGGACTCCAGCAAGAAGGGCGAGTTACGGCCGGCCAAGTA GAGCGGTACTACGAAAAGGCACGGGTCCACGATCTGGGGACTCCAGCAAG AAGGGCGAGTTACGGCCGGCCAAGTAGAGCGGTACTACGAAAAG back to top
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