mRNA_S-dermatodea_contig10913.615.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10913.615.1
Unique NamemRNA_S-dermatodea_contig10913.615.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.410e-38
Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
            LKRVRAVAQYM+KELQMVPWTLT NYLK  G+ +S   SLLML+G+GDPSGCGEGFS+L R AEQAKA+ASLTTS+KIVA+RSV+KVTGT+ DLR
Sbjct: 1016 LKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATASLTTSQKIVAERSVQKVTGTNSDLR 1110          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.160e-37
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 1
Query:    1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
            LKRVRAVAQYM+KELQMVPWTLT NYLK  G+ +S   SLLML+G+GDPSGCGEGFS+L R AEQAKA+ SLTTS+KIVA+RSV+KVTGT+ DLR
Sbjct:  230 LKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATTSLTTSQKIVAERSVQKVTGTNSDLR 324          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A7S2VAC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAC4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.480e-11
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   19 VAQYMHKELQMVPWTLTANYLK-HRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
            VAQ++H+EL + PW LT  +L  H+    ++GT ++ LTG+GDPSG GEGFS+L R+ + +K S S+  +     +  VKK+TGT+ DLR
Sbjct:    4 VAQFIHQELLLAPWHLTGEFLDVHK---KAEGTGMMKLTGLGDPSGTGEGFSFL-REVD-SKPSKSVGNA---AINAQVKKITGTNDDLR 85          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO)

HSP 1 Score: 68.6 bits (166), Expect = 2.520e-11
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
            L++   VAQ++ +ELQ+ PW LT  ++     G  +GT ++ LTG+GDPSG GEGFS+L R+A+ +K S S+  +     +  +KK+TGT  DLR
Sbjct:  794 LRQKYEVAQFIFEELQLAPWHLTVEFIDVHKKG--EGTGMMKLTGLGDPSGMGEGFSFL-READ-SKPSKSVGNA---ALNSQIKKITGTENDLR 881          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A0P1AXT8_PLAHL (Protein serine threonine kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXT8_PLAHL)

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-10
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKAS-----ASLTTSEKIVAD-----RSVKKVTGTSGDLR 285
            VA+Y++++LQ+ PW LT NY++    G  +G+ +L L G+GDP+G GEGFS++     +AK       A+ TT  KI A+     ++V  VTGT+ DLR
Sbjct:  848 VARYINEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTTESKISAETAAVQKAVAAVTGTTADLR 944          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: B7FQ37_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ37_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 1.630e-10
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
            L++   +AQ+++++LQ+ PW LT  ++     G   GT ++ LTG+GDPSG GEGFS++ R+A+ +K S S+  +        VKK+TGT  DLR
Sbjct:  786 LRQKHEIAQFIYEQLQLAPWHLTGEFIDVHKKG--DGTGMMKLTGLGDPSGQGEGFSFI-READ-SKPSKSVGNA---ALSAEVKKITGTEDDLR 873          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A7S3PU55_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU55_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.640e-10
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
            LKR   VA+++ +ELQ+ PW LTA+++     G  QG+ ++ LTG+GDPSG G GF+++       KA+ +    +  +  R VKK+TGT  DLR
Sbjct:  994 LKRKEEVAKFIFEELQLAPWQLTADFIDVHKKG--QGSGMMKLTGLGDPSGLGAGFNFIREN--DGKANKASPNGDGALNAR-VKKITGTDKDLR 1083          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: H3GM70_PHYRM (Bromo domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM70_PHYRM)

HSP 1 Score: 65.9 bits (159), Expect = 2.240e-10
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAK----------ASASLTTSEKIVADRSVKKVTGTSGDLR 285
            VA+Y++++LQ+ PW LT NY++    G  +G+ +L L G+GDP+G GEGFS++     +AK           + S T++E     ++V  VTGT+ DLR
Sbjct:  858 VARYVNEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKTSAETTAMQKAVAAVTGTTADLR 954          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A6G0SI53_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SI53_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.630e-10
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKAS-----ASLTTSEKIVAD-----RSVKKVTGTSGDLR 285
            VA+Y++++LQ+ PW LT NY++    G  +G+ +L L G+GDP+G GEGFS++     +AK       A+ T   KI A+     ++V  VTGT+ DLR
Sbjct:  869 VARYINEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKISAESAAVQKAVAAVTGTTADLR 965          
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: W2QZ04_PHYPN (Bromo domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QZ04_PHYPN)

HSP 1 Score: 64.7 bits (156), Expect = 5.690e-10
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKAS-----ASLTTSEKIVAD-----RSVKKVTGTSGDLR 285
            VA+Y++++LQ+ PW LT NY++    G  +G+ +L L G+GDP+G GEGFS++     +AK       A+ T   KI A+     ++V  VTGT+ DLR
Sbjct:  851 VARYINEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKISAETAAVQKAVAAVTGTTADLR 947          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW7_ECTSI3.410e-3877.89Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVI6_9PHAE1.160e-3776.84Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2VAC4_9STRA1.480e-1145.56Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A1Z5JFQ5_FISSO2.520e-1143.16Transcription initiation factor TFIID subunit 1 n=... [more]
A0A0P1AXT8_PLAHL1.200e-1041.41Protein serine threonine kinase n=1 Tax=Plasmopara... [more]
B7FQ37_PHATC1.630e-1041.05Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3PU55_9STRA1.640e-1041.05Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
H3GM70_PHYRM2.240e-1038.38Bromo domain-containing protein n=1 Tax=Phytophtho... [more]
A0A6G0SI53_9STRA5.630e-1040.40Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
W2QZ04_PHYPN5.690e-1040.40Bromo domain-containing protein n=10 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10913contigS-dermatodea_contig10913:803..1466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10913.615.1prot_S-dermatodea_contig10913.615.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10913 803..1436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924180.391446-CDS-S-dermatodea_contig10913:802..9971622924180.391446-CDS-S-dermatodea_contig10913:802..997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10913 803..997 -
1694079073.3217623-CDS-S-dermatodea_contig10913:802..9971694079073.3217623-CDS-S-dermatodea_contig10913:802..997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10913 803..997 -
1622924180.4079058-CDS-S-dermatodea_contig10913:1358..14361622924180.4079058-CDS-S-dermatodea_contig10913:1358..1436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10913 1359..1436 -
1694079073.3338845-CDS-S-dermatodea_contig10913:1358..14361694079073.3338845-CDS-S-dermatodea_contig10913:1358..1436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10913 1359..1436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924180.4214299-UTR-S-dermatodea_contig10913:1436..14661622924180.4214299-UTR-S-dermatodea_contig10913:1436..1466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10913 1437..1466 -
1694079073.3440661-UTR-S-dermatodea_contig10913:1436..14661694079073.3440661-UTR-S-dermatodea_contig10913:1436..1466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10913 1437..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10913.615.1

>prot_S-dermatodea_contig10913.615.1 ID=prot_S-dermatodea_contig10913.615.1|Name=mRNA_S-dermatodea_contig10913.615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLT
RQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLRWAVWK*
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mRNA from alignment at S-dermatodea_contig10913:803..1466-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10913.615.1 ID=mRNA_S-dermatodea_contig10913.615.1|Name=mRNA_S-dermatodea_contig10913.615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=664bp|location=Sequence derived from alignment at S-dermatodea_contig10913:803..1466- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGAAGCGCGTGAGGGCCGTTGCGCAGTACATGCACAAGGAGTTGCAGAT GGTGCCGTGGACGCTGACCGCCAACTATCTCAAGCACCGCGGGATGGGCG CGAGTCAGGTGACGTGTTTCGTTCGGTACATCGGCTGTTTTTTCGGAGCG AACAGTGCGAACAATAATCGGCCAGATAAAAACCGCCGTTTAAATCAGTT TGTGCGAAATAGGTAAAGGCTCTCATTCGTCGAAAACGACGCTCTTCACG TCCTACCGATAGGGTCCTTGTAACTACACTTCTGTCGCGCGCACTGTAAG GCATGCAGTCACTACTTTGTGGGTTTCCGTTTGGTGGTCCTTCTGCAGCA GTTTTTCTTACGCAACTGCCGCATGAGAGTCACCGTCGAAGGGCATGAAA CGGGCGCGTACCCGTTTCTGCCACTTCAAGAACGATCGACCATGATGTAA TTTCGCGTGTATCTTTCAGGGCACGAGCCTCCTAATGCTTACCGGCGTGG GAGACCCGTCGGGGTGCGGGGAGGGCTTCAGCTACCTCACGCGGCAGGCG GAGCAGGCGAAGGCGTCGGCATCGCTCACCACGAGCGAGAAGATCGTGGC AGACCGGAGCGTGAAGAAGGTCACAGGCACAAGCGGGGACTTGAGGTGGG CCGTTTGGAAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10913:803..1466-

>mRNA_S-dermatodea_contig10913.615.1 ID=mRNA_S-dermatodea_contig10913.615.1|Name=mRNA_S-dermatodea_contig10913.615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig10913:803..1466- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACAAGGAGTTGCAGATGGTGCCGTGGACGCTGACCGCCAACTATCT
CAAGCACCGCGGGATGGGCGCGAGTCAGATGCACAAGGAGTTGCAGATGG
TGCCGTGGACGCTGACCGCCAACTATCTCAAGCACCGCGGGATGGGCGCG
AGTCAGGGCACGAGCCTCCTAATGCTTACCGGCGTGGGAGACCCGTCGGG
GTGCGGGGAGGGCTTCAGCTACCTCACGCGGCAGGCGGAGCAGGCGAAGG
CGTCGGCATCGCTCACCACGAGCGAGAAGATCGTGGCAGACCGGAGCGTG
AAGAAGGTCACAGGCACAAGCGGGGACTTGAGGTGGGCCGTTTGGAAATA
AGGCACGAGCCTCCTAATGCTTACCGGCGTGGGAGACCCGTCGGGGTGCG
GGGAGGGCTTCAGCTACCTCACGCGGCAGGCGGAGCAGGCGAAGGCGTCG
GCATCGCTCACCACGAGCGAGAAGATCGTGGCAGACCGGAGCGTGAAGAA
GGTCACAGGCACAAGCGGGGACTTGAGGTGGGCCGTTTGGAAATAA
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