mRNA_S-dermatodea_contig10913.615.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI) HSP 1 Score: 145 bits (365), Expect = 3.410e-38 Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = 1
Query: 1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
LKRVRAVAQYM+KELQMVPWTLT NYLK G+ +S SLLML+G+GDPSGCGEGFS+L R AEQAKA+ASLTTS+KIVA+RSV+KVTGT+ DLR
Sbjct: 1016 LKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATASLTTSQKIVAERSVQKVTGTNSDLR 1110
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE) HSP 1 Score: 143 bits (361), Expect = 1.160e-37 Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = 1
Query: 1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
LKRVRAVAQYM+KELQMVPWTLT NYLK G+ +S SLLML+G+GDPSGCGEGFS+L R AEQAKA+ SLTTS+KIVA+RSV+KVTGT+ DLR
Sbjct: 230 LKRVRAVAQYMYKELQMVPWTLTINYLKRHGITSSPAASLLMLSGMGDPSGCGEGFSFLPRPAEQAKATTSLTTSQKIVAERSVQKVTGTNSDLR 324
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A7S2VAC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAC4_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.480e-11 Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 19 VAQYMHKELQMVPWTLTANYLK-HRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
VAQ++H+EL + PW LT +L H+ ++GT ++ LTG+GDPSG GEGFS+L R+ + +K S S+ + + VKK+TGT+ DLR
Sbjct: 4 VAQFIHQELLLAPWHLTGEFLDVHK---KAEGTGMMKLTGLGDPSGTGEGFSFL-REVD-SKPSKSVGNA---AINAQVKKITGTNDDLR 85
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO) HSP 1 Score: 68.6 bits (166), Expect = 2.520e-11 Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
L++ VAQ++ +ELQ+ PW LT ++ G +GT ++ LTG+GDPSG GEGFS+L R+A+ +K S S+ + + +KK+TGT DLR
Sbjct: 794 LRQKYEVAQFIFEELQLAPWHLTVEFIDVHKKG--EGTGMMKLTGLGDPSGMGEGFSFL-READ-SKPSKSVGNA---ALNSQIKKITGTENDLR 881
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A0P1AXT8_PLAHL (Protein serine threonine kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXT8_PLAHL) HSP 1 Score: 66.6 bits (161), Expect = 1.200e-10 Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1
Query: 19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKAS-----ASLTTSEKIVAD-----RSVKKVTGTSGDLR 285
VA+Y++++LQ+ PW LT NY++ G +G+ +L L G+GDP+G GEGFS++ +AK A+ TT KI A+ ++V VTGT+ DLR
Sbjct: 848 VARYINEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTTESKISAETAAVQKAVAAVTGTTADLR 944
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: B7FQ37_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ37_PHATC) HSP 1 Score: 66.2 bits (160), Expect = 1.630e-10 Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
L++ +AQ+++++LQ+ PW LT ++ G GT ++ LTG+GDPSG GEGFS++ R+A+ +K S S+ + VKK+TGT DLR
Sbjct: 786 LRQKHEIAQFIYEQLQLAPWHLTGEFIDVHKKG--DGTGMMKLTGLGDPSGQGEGFSFI-READ-SKPSKSVGNA---ALSAEVKKITGTEDDLR 873
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A7S3PU55_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU55_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.640e-10 Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 1 LKRVRAVAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKASASLTTSEKIVADRSVKKVTGTSGDLR 285
LKR VA+++ +ELQ+ PW LTA+++ G QG+ ++ LTG+GDPSG G GF+++ KA+ + + + R VKK+TGT DLR
Sbjct: 994 LKRKEEVAKFIFEELQLAPWQLTADFIDVHKKG--QGSGMMKLTGLGDPSGLGAGFNFIREN--DGKANKASPNGDGALNAR-VKKITGTDKDLR 1083
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: H3GM70_PHYRM (Bromo domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM70_PHYRM) HSP 1 Score: 65.9 bits (159), Expect = 2.240e-10 Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAK----------ASASLTTSEKIVADRSVKKVTGTSGDLR 285
VA+Y++++LQ+ PW LT NY++ G +G+ +L L G+GDP+G GEGFS++ +AK + S T++E ++V VTGT+ DLR
Sbjct: 858 VARYVNEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKTSAETTAMQKAVAAVTGTTADLR 954
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: A0A6G0SI53_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SI53_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 5.630e-10 Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKAS-----ASLTTSEKIVAD-----RSVKKVTGTSGDLR 285
VA+Y++++LQ+ PW LT NY++ G +G+ +L L G+GDP+G GEGFS++ +AK A+ T KI A+ ++V VTGT+ DLR
Sbjct: 869 VARYINEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKISAESAAVQKAVAAVTGTTADLR 965
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Match: W2QZ04_PHYPN (Bromo domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QZ04_PHYPN) HSP 1 Score: 64.7 bits (156), Expect = 5.690e-10 Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 19 VAQYMHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTRQAEQAKAS-----ASLTTSEKIVAD-----RSVKKVTGTSGDLR 285
VA+Y++++LQ+ PW LT NY++ G +G+ +L L G+GDP+G GEGFS++ +AK A+ T KI A+ ++V VTGT+ DLR
Sbjct: 851 VARYINEQLQLTPWNLTNNYVECHLQG--KGSGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKISAETAAVQKAVAAVTGTTADLR 947 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10913.615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10913.615.1 >prot_S-dermatodea_contig10913.615.1 ID=prot_S-dermatodea_contig10913.615.1|Name=mRNA_S-dermatodea_contig10913.615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp MHKELQMVPWTLTANYLKHRGMGASQGTSLLMLTGVGDPSGCGEGFSYLTback to top mRNA from alignment at S-dermatodea_contig10913:803..1466- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10913.615.1 ID=mRNA_S-dermatodea_contig10913.615.1|Name=mRNA_S-dermatodea_contig10913.615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=664bp|location=Sequence derived from alignment at S-dermatodea_contig10913:803..1466- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10913:803..1466- >mRNA_S-dermatodea_contig10913.615.1 ID=mRNA_S-dermatodea_contig10913.615.1|Name=mRNA_S-dermatodea_contig10913.615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig10913:803..1466- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |