mRNA_S-dermatodea_contig10877.583.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI) HSP 1 Score: 152 bits (384), Expect = 3.420e-40 Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 3
Query: 3 RDLRDRLVSMVREVALSDDAGPFAVPVDVPDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAIKAVSDGG 311
RDLRD L + VREVA S DA FA PVDV DY + +PVPMDLGLILRRLEK+YYC V+ALEFDCNL+Y NCTKYN PGS IVKLA ++SD+LVQAIKA+S+ G
Sbjct: 1558 RDLRDALAAKVREVAESPDAALFAEPVDVVDYHTIVPVPMDLGLILRRLEKDYYCSVEALEFDCNLVYDNCTKYNEPGSDIVKLAFTVSDQLVQAIKAISEPG 1660
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.480e-40 Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 3
Query: 3 RDLRDRLVSMVREVALSDDAGPFAVPVDVPDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAIKAVSDGG 311
RDLRD L + VREVA S DA FA PVDV DY + +PVPMDLGLILRRLEK+YYC V+ALEFDCNL+Y NCTKYN PGS IVKLA ++SD+LVQAIKA+S+ G
Sbjct: 1517 RDLRDPLAAKVREVAESPDAALFAEPVDVADYHTIVPVPMDLGLILRRLEKDYYCSVEALEFDCNLVYDNCTKYNEPGSDIVKLAFTVSDQLVQAIKAISEPG 1619
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: A0A7S0DD85_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DD85_9EUKA) HSP 1 Score: 68.9 bits (167), Expect = 1.870e-11 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 3
Query: 9 LRDRLVSMVREVALSDDAGPFAVPVDV---PDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQA 287
+++ + +V + + + PF PVD+ P Y + VP+DL LI R+E +YY +DAL FD I ANC ++N+P S++VK ++ + +A
Sbjct: 141 IKESALKIVDSLMDTKEFEPFRFPVDLEHFPHYTGLVNVPIDLSLIRARIENDYYRQIDALTFDIKHIQANCVRFNKPDSFVVKAVENMVKKYEEA 236
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: UPI00148D340F (bromodomain testis-specific protein isoform X1 n=8 Tax=Pleuronectoidei TaxID=30942 RepID=UPI00148D340F) HSP 1 Score: 67.8 bits (164), Expect = 1.430e-10 Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 3
Query: 66 PFAVPVD-----VPDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAI 290
PF PVD +PDY + I PMDLG I++RL+K+YYC D N ++ NC YNRPG IV +A ++ +Q +
Sbjct: 129 PFRQPVDAVALRLPDYYTIIKNPMDLGTIMKRLQKKYYCEAHECIKDFNAMFTNCYMYNRPGDDIVFMAQTLEKLFLQKL 208
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: A0A835ZAL2_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL2_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.780e-10 Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 3
Query: 12 RDRLVSMVREVALSDDAGPFAVPVD---VPDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQ 284
R RL + + ++ A FA PVD V Y + + +PMDL LILRRLE YY AL DC+LI NC K+N S I + + ++ L +
Sbjct: 1 RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAE 94
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: A0A7S1HYR8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HYR8_9EUGL) HSP 1 Score: 61.6 bits (148), Expect = 1.860e-8 Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query: 6 DLRDRLVSMVREVALSDDAGPFAVPVDV-----PDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAI 290
+LR L ++ R+V S+DA F PVDV PDYA+ I PMDLG + RL YY ++A+ D +LI+ANC +YN + K A ++++ Q +
Sbjct: 313 ELRQCLFAL-RKVMDSEDATDFLNPVDVLRLDLPDYATIITHPMDLGTVHHRLGSGYYPNLEAVLQDVDLIWANCYRYNGTEHAVGKKAKNLAELFGQEL 411
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: UPI001B889C8C (bromodomain and WD repeat-containing protein 1-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889C8C) HSP 1 Score: 60.8 bits (146), Expect = 3.880e-8 Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 3
Query: 18 RLVSMVREVALSDDAGPFAVPVDV---PDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAIKAVS 302
R+V + + A PF PVD+ P+YA I P+DL I RLE +Y V A++ D I +N +++N PG+ IV+ A +++ L++ IK S
Sbjct: 1240 RIVRGLEAIMQHSIAEPFNAPVDLSAFPEYAMIIEYPIDLSTIKNRLENNFYRRVAAVQSDVRRIESNTSRFNEPGTPIVRSACIVTECLLRFIKDTS 1337
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: UPI001C933ED4 (homeotic protein female sterile-like n=1 Tax=Drosophila grimshawi TaxID=7222 RepID=UPI001C933ED4) HSP 1 Score: 59.7 bits (143), Expect = 4.890e-8 Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 3
Query: 60 AGPFAVPVD-----VPDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAIK 293
A PF PV+ +PDY I PMDL I +RL YY D NLI+ NC+ YN+P ++ +A + +QAIK
Sbjct: 46 AYPFQQPVNAKKLKLPDYHDIIKQPMDLATIKKRLANNYYWSATEAAADINLIFTNCSLYNKPTEDVIIMAKVLESVFLQAIK 128
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: B4JZ41_DROGR (GH22416 n=1 Tax=Drosophila grimshawi TaxID=7222 RepID=B4JZ41_DROGR) HSP 1 Score: 59.7 bits (143), Expect = 6.460e-8 Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 3
Query: 60 AGPFAVPVD-----VPDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAIK 293
A PF PV+ +PDY I PMDL I +RL YY D NLI+ NC+ YN+P ++ +A + +QAIK
Sbjct: 46 AYPFQQPVNAKKLKLPDYHDIIKQPMDLATIKKRLANNYYWSATEAAADINLIFTNCSLYNKPTEDVIIMAKVLESVFLQAIK 128
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Match: B4JZ39_DROGR (GH22415 n=5 Tax=Drosophila grimshawi TaxID=7222 RepID=B4JZ39_DROGR) HSP 1 Score: 59.7 bits (143), Expect = 6.960e-8 Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 3
Query: 60 AGPFAVPVD-----VPDYASFIPVPMDLGLILRRLEKEYYCCVDALEFDCNLIYANCTKYNRPGSYIVKLASSISDRLVQAIK 293
A PF PV+ +PDY I PMDL I +RL YY D NLI+ NC+ YN+P ++ +A + +QAIK
Sbjct: 46 AYPFQQPVNAKKLKLPDYHDIIKQPMDLATIKKRLANSYYWSATEAAADINLIFTNCSLYNKPTEDVIIMAKVLESVFLQAIK 128 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10877.583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10877.583.1 >prot_S-dermatodea_contig10877.583.1 ID=prot_S-dermatodea_contig10877.583.1|Name=mRNA_S-dermatodea_contig10877.583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp MVREVALSDDAGPFAVPVDVPDYASFIPVPMDLGLILRRLEKEYYCCVDAback to top mRNA from alignment at S-dermatodea_contig10877:2471..4743+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10877.583.1 ID=mRNA_S-dermatodea_contig10877.583.1|Name=mRNA_S-dermatodea_contig10877.583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2273bp|location=Sequence derived from alignment at S-dermatodea_contig10877:2471..4743+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10877:2471..4743+ >mRNA_S-dermatodea_contig10877.583.1 ID=mRNA_S-dermatodea_contig10877.583.1|Name=mRNA_S-dermatodea_contig10877.583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig10877:2471..4743+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |