mRNA_S-dermatodea_contig10834.565.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: D7FZ73_ECTSI (Sno, strawberry notch homolog 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ73_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.720e-28 Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQLFWQVIMEAAGDGSLYTLVD 222
RGVGAMELVAMQLKAEG LLSR+LSF+GCEFSL+PLVN+K+QID YNA+ WQL WQV+ +A G+ +LYTLV+
Sbjct: 321 RGVGAMELVAMQLKAEGMLLSRSLSFQGCEFSLVPLVNSKFQIDSYNAAVKTWQLLWQVLNDAVGEDTLYTLVE 394
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: B3RSN6_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RSN6_TRIAD) HSP 1 Score: 56.2 bits (134), Expect = 2.060e-7 Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQLFWQVIMEA 189
RG+GA E++AM++KA G +SR LSFE EF + + T QI +YN S VWQ + I +A
Sbjct: 305 RGLGASEMLAMEMKAAGMYVSRGLSFESAEFHTVEINLTDEQIRVYNLSARVWQQLAEAIKKA 367
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: UPI001069E7A3 (protein strawberry notch homolog 1-like isoform X2 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069E7A3) HSP 1 Score: 55.5 bits (132), Expect = 3.860e-7 Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQ 162
RGVGAMELVAM +K G ++R LSF G F + + ++ I++YNAS ++WQ
Sbjct: 495 RGVGAMELVAMDMKLRGMYMARQLSFSGVTFDIKEVPLSEQFIEMYNASAILWQ 548
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: UPI001068F432 (protein strawberry notch homolog 1-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068F432) HSP 1 Score: 55.5 bits (132), Expect = 3.870e-7 Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQ 162
RGVGAMELVAM +K G ++R LSF G F + + ++ I++YNAS ++WQ
Sbjct: 549 RGVGAMELVAMDMKLRGMYMARQLSFSGVTFDIKEVPLSEQFIEMYNASAILWQ 602
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: E4XRW5_OIKDI (AAA_34 domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XRW5_OIKDI) HSP 1 Score: 54.3 bits (129), Expect = 9.610e-7 Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 4 GVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQ 162
GVGAMELVAM +K G L+R LSFEGCEF L + + + LY+A+ +W+
Sbjct: 297 GVGAMELVAMDMKRRGVYLARQLSFEGCEFELEEVPLDGFFMTLYDAAAELWR 349
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: A0A7D9HFC7_PARCT (Strawberry notch homolog 1 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HFC7_PARCT) HSP 1 Score: 54.3 bits (129), Expect = 9.830e-7 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQ 162
RGVGAMELVAM +K G ++R LSF G F + + + I++YNAS ++WQ
Sbjct: 193 RGVGAMELVAMDMKLRGMYMARQLSFSGVTFDIKEVPLSDKFIEMYNASAILWQ 246
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: A0A8J9WME0_9CHLO (Protein strawberry notch homolog 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WME0_9CHLO) HSP 1 Score: 54.3 bits (129), Expect = 9.890e-7 Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQLFWQVIMEAA 192
RGVGA+ELVAM +KA G + RTLSF+GCEF ++ + + Y A++ +W + + AA
Sbjct: 488 RGVGALELVAMDMKARGMFVCRTLSFKGCEFEVVEAPLEEPVLSHYRAASRMWNQLRREFLYAA 551
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: I0YZS5_COCSC (Uncharacterized protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZS5_COCSC) HSP 1 Score: 53.9 bits (128), Expect = 1.350e-6 Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQLFWQVIMEAA 192
RGVGA+ELVAM +KA G + RTLSF+GCEF ++ + + Y A+ +W + + AA
Sbjct: 274 RGVGALELVAMDMKARGMFVCRTLSFKGCEFEVVEAPLEEPVLSHYRAAARMWNQLRREFLYAA 337
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: A0A2K3NQH4_TRIPR (Protein strawberry notch-like n=7 Tax=Trifolium TaxID=3898 RepID=A0A2K3NQH4_TRIPR) HSP 1 Score: 53.5 bits (127), Expect = 1.840e-6 Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 4 GVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVW 159
GVGA+ELVAM LKA G L RTLS++G EF ++ +D+Y +T VW
Sbjct: 382 GVGALELVAMDLKARGMYLCRTLSYKGAEFDIIEARLEDKMMDVYKKATEVW 433
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Match: D8RKZ2_SELML (PHD-type domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RKZ2_SELML) HSP 1 Score: 53.5 bits (127), Expect = 1.840e-6 Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 1 RGVGAMELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVW 159
RGVGA+ELVAM +KA G + RTLSF+G EF ++ + D+Y +T +W
Sbjct: 457 RGVGALELVAMDMKARGMYVCRTLSFQGAEFEVVEVPLEAAMKDMYAKATRIW 509 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10834.565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10834.565.1 >prot_S-dermatodea_contig10834.565.1 ID=prot_S-dermatodea_contig10834.565.1|Name=mRNA_S-dermatodea_contig10834.565.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp MELVAMQLKAEGKLLSRTLSFEGCEFSLLPLVNTKWQIDLYNASTMVWQLback to top mRNA from alignment at S-dermatodea_contig10834:1557..5783- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10834.565.1 ID=mRNA_S-dermatodea_contig10834.565.1|Name=mRNA_S-dermatodea_contig10834.565.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4227bp|location=Sequence derived from alignment at S-dermatodea_contig10834:1557..5783- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10834:1557..5783- >mRNA_S-dermatodea_contig10834.565.1 ID=mRNA_S-dermatodea_contig10834.565.1|Name=mRNA_S-dermatodea_contig10834.565.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig10834:1557..5783- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |